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The map label for this gene is ybiH [H]

Identifier: 238028560

GI number: 238028560

Start: 3435775

End: 3436692

Strand: Reverse

Name: ybiH [H]

Synonym: bglu_1g30240

Alternate gene names: 238028560

Gene position: 3436692-3435775 (Counterclockwise)

Preceding gene: 238028564

Following gene: 238028559

Centisome position: 87.97

GC content: 74.84

Gene sequence:

>918_bases
ATGACGGAAGCGAAGAAGCTGCGTCGCGCGTCGTCGAGCGGCTATGCGCGGGGCGACGAAACACGCCAGCGCATCATCGA
GGCCGCCATCGAGCTGTTCGGCGAGCGCGGGTTCGCCGGCGCCTCGACGCGCGAGATCGCCGCGCGCGCGGGGGTCAACG
CGCCGGCGCTGCAGTATTACTTCGAGAACAAGGAAGGGGTGTTCCGCGCCTGCGCCGACGCGATCGCCGACAGCGCCTGC
GGGGCGTTCGGCCCGCCGCTCGACCACGCGCGCGCGATGCTGGCCGCGCAGGCCGGCGTGGAGACGCTGATCGACGCGTT
CCTCGGCATCATGCATGCGCTCCTGGAGCGGATGTTCACGGCGCCCAAGACGGCTCACCAGCGCATGTTCTTCGCGCGCG
AGCAGGCCGGGCTCGAACCGGACGTGGCCACCGAGATCCTGATGGAGCGCATCCGGCGTCCGCTCAACGACGTCTGCGCG
GAGCTGGTCGGCCGCATCTCGGGCCTCGATCCCGACAGCCCCGTCACGCGGATTCGCGCGTTCAGCCTGCTCGGCCAGCT
CACGGTGTTCCACATCGCCCAGCGCTCGGCGCTGACGCTGCTCGGCTGGGAGTCGTTCGACGGCGGGCGCGGCGCGCTGC
TGCGCGCCACCATCGACGGCCAGACGCGCACGCTGCTGCGCCAATGGCACGCCGAGCACGGCGTGCTGCCGGCCGCGCTC
GCCGAGGCGGCGACGGCCATCGGCAGGCCGTCGTCCGGGTCCGCCCCGCCGTCTTCACCGGCGCCGCGCCGCGCCGCCGC
GCGCCGTGCCCCGGCCGCGCGCGGCACCAGGCACGAGCCGCCGGCCGACGGCGAGCCGAAGCCGGCCGCGCCGCGGCGGC
GCGCGCCGCGCCCGGACAACAAGACGCGCGCGCGCTGA

Upstream 100 bases:

>100_bases
GACGACATTCGGGTATCCAAATTATTCCAAGCGGAATAATTATTCCAGTTGGTAAATTTGTGTCAAGTAGAATGTGGTCT
GTTTGAATTGCGAGGGGTCT

Downstream 100 bases:

>100_bases
GCGTGCCGCCGGCGGCCGGACCGAGCCCGGTTCACGGCCCGGCGCCGCGTGCATGACATCCGCGCGTCACGATTGCCGGT
CTATCGTCGGGGTTCCGGGC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MTEAKKLRRASSSGYARGDETRQRIIEAAIELFGERGFAGASTREIAARAGVNAPALQYYFENKEGVFRACADAIADSAC
GAFGPPLDHARAMLAAQAGVETLIDAFLGIMHALLERMFTAPKTAHQRMFFAREQAGLEPDVATEILMERIRRPLNDVCA
ELVGRISGLDPDSPVTRIRAFSLLGQLTVFHIAQRSALTLLGWESFDGGRGALLRATIDGQTRTLLRQWHAEHGVLPAAL
AEAATAIGRPSSGSAPPSSPAPRRAAARRAPAARGTRHEPPADGEPKPAAPRRRAPRPDNKTRAR

Sequences:

>Translated_305_residues
MTEAKKLRRASSSGYARGDETRQRIIEAAIELFGERGFAGASTREIAARAGVNAPALQYYFENKEGVFRACADAIADSAC
GAFGPPLDHARAMLAAQAGVETLIDAFLGIMHALLERMFTAPKTAHQRMFFAREQAGLEPDVATEILMERIRRPLNDVCA
ELVGRISGLDPDSPVTRIRAFSLLGQLTVFHIAQRSALTLLGWESFDGGRGALLRATIDGQTRTLLRQWHAEHGVLPAAL
AEAATAIGRPSSGSAPPSSPAPRRAAARRAPAARGTRHEPPADGEPKPAAPRRRAPRPDNKTRAR
>Mature_304_residues
TEAKKLRRASSSGYARGDETRQRIIEAAIELFGERGFAGASTREIAARAGVNAPALQYYFENKEGVFRACADAIADSACG
AFGPPLDHARAMLAAQAGVETLIDAFLGIMHALLERMFTAPKTAHQRMFFAREQAGLEPDVATEILMERIRRPLNDVCAE
LVGRISGLDPDSPVTRIRAFSLLGQLTVFHIAQRSALTLLGWESFDGGRGALLRATIDGQTRTLLRQWHAEHGVLPAALA
EAATAIGRPSSGSAPPSSPAPRRAAARRAPAARGTRHEPPADGEPKPAAPRRRAPRPDNKTRAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081783, Length=215, Percent_Identity=30.6976744186047, Blast_Score=99, Evalue=5e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- InterPro:   IPR015292 [H]

Pfam domain/function: PF09209 DUF1956; PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 32825; Mature: 32694

Theoretical pI: Translated: 10.77; Mature: 10.77

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEAKKLRRASSSGYARGDETRQRIIEAAIELFGERGFAGASTREIAARAGVNAPALQYY
CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHH
FENKEGVFRACADAIADSACGAFGPPLDHARAMLAAQAGVETLIDAFLGIMHALLERMFT
HCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
APKTAHQRMFFAREQAGLEPDVATEILMERIRRPLNDVCAELVGRISGLDPDSPVTRIRA
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
FSLLGQLTVFHIAQRSALTLLGWESFDGGRGALLRATIDGQTRTLLRQWHAEHGVLPAAL
HHHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCHHHHH
AEAATAIGRPSSGSAPPSSPAPRRAAARRAPAARGTRHEPPADGEPKPAAPRRRAPRPDN
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
KTRAR
CCCCC
>Mature Secondary Structure 
TEAKKLRRASSSGYARGDETRQRIIEAAIELFGERGFAGASTREIAARAGVNAPALQYY
CHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHH
FENKEGVFRACADAIADSACGAFGPPLDHARAMLAAQAGVETLIDAFLGIMHALLERMFT
HCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
APKTAHQRMFFAREQAGLEPDVATEILMERIRRPLNDVCAELVGRISGLDPDSPVTRIRA
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
FSLLGQLTVFHIAQRSALTLLGWESFDGGRGALLRATIDGQTRTLLRQWHAEHGVLPAAL
HHHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCHHHHH
AEAATAIGRPSSGSAPPSSPAPRRAAARRAPAARGTRHEPPADGEPKPAAPRRRAPRPDN
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
KTRAR
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]