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The map label for this gene is qseB [H]

Identifier: 238028504

GI number: 238028504

Start: 3361416

End: 3362093

Strand: Reverse

Name: qseB [H]

Synonym: bglu_1g29680

Alternate gene names: 238028504

Gene position: 3362093-3361416 (Counterclockwise)

Preceding gene: 238028508

Following gene: 238028503

Centisome position: 86.06

GC content: 70.5

Gene sequence:

>678_bases
ATGGATGCGGACACGATGCGAATACTGCTGGTCGAAGACGACAGGATGATCGCCGAGGGCGTGCGCAAGGCGCTCAAGGC
CGATGGCTGCGCGGTGGACTGGGTGCAGGACGGCGAGGCCGCGCTGACCGCGCTCGGCGGCGAAACCTACGACCTGATGC
TGCTCGATCTCGGGCTGCCCAAGCGCGACGGCGTGGAGGTGCTGCGCACGGCGCGCGCGCGCGGCCACGCGCTGCCGGTG
CTGATCATCACCGCGCGCGACGCGGTGCCGGACCGCGTGAAGGGGCTCGACGCCGGCGCCGACGACTACCTCGTCAAGCC
GTTCGACCTCGACGAGCTCGCCGCGCGCATGCGCGCGCTGATCCGCCGCCAGGCCGGGCGCAGCGAATCGGTGATCCGCC
ACGGCGCGCTCACGCTCGATCCGGCCTCGCATCAGGTCACGCTCGACGGCGCGCCGGTGGCGCTTTCGGCGCGCGAGTTC
GCGCTGCTCGAGGCGCTGCTCGCACGGCCCGGCGCGGTGCTCTCGAAGAGCCAGCTCGAGGAGAAGATGTACGGCTGGGG
CGAGGAGATCGGCAGCAACACCGTGGAGGTCTACATTCACGCGCTGCGCAAGAAGCTCGGCTCGGACCTGATCCGCAACG
TGCGCGGGCTCGGCTACATGGTCGTCAAGGAAGCGTAG

Upstream 100 bases:

>100_bases
GATTTGGCCGCGAGCGCACATTGTAGAGACAAGCGTCGCGGCCGGGATGACGAAATGCGCCGCGCGCGGCGCTACAATGA
AGGCCATTGATTGCGGCGTC

Downstream 100 bases:

>100_bases
CGCGTGCGGTCGATTCGTCATCAATTGCTGATCTGGCTGCTCGCGATCGTGGTCGCGGGGGTGGGCGCGGCCGGCTGGCT
GATCTACCGCCAGGCGCTCG

Product: DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MDADTMRILLVEDDRMIAEGVRKALKADGCAVDWVQDGEAALTALGGETYDLMLLDLGLPKRDGVEVLRTARARGHALPV
LIITARDAVPDRVKGLDAGADDYLVKPFDLDELAARMRALIRRQAGRSESVIRHGALTLDPASHQVTLDGAPVALSAREF
ALLEALLARPGAVLSKSQLEEKMYGWGEEIGSNTVEVYIHALRKKLGSDLIRNVRGLGYMVVKEA

Sequences:

>Translated_225_residues
MDADTMRILLVEDDRMIAEGVRKALKADGCAVDWVQDGEAALTALGGETYDLMLLDLGLPKRDGVEVLRTARARGHALPV
LIITARDAVPDRVKGLDAGADDYLVKPFDLDELAARMRALIRRQAGRSESVIRHGALTLDPASHQVTLDGAPVALSAREF
ALLEALLARPGAVLSKSQLEEKMYGWGEEIGSNTVEVYIHALRKKLGSDLIRNVRGLGYMVVKEA
>Mature_225_residues
MDADTMRILLVEDDRMIAEGVRKALKADGCAVDWVQDGEAALTALGGETYDLMLLDLGLPKRDGVEVLRTARARGHALPV
LIITARDAVPDRVKGLDAGADDYLVKPFDLDELAARMRALIRRQAGRSESVIRHGALTLDPASHQVTLDGAPVALSAREF
ALLEALLARPGAVLSKSQLEEKMYGWGEEIGSNTVEVYIHALRKKLGSDLIRNVRGLGYMVVKEA

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=216, Percent_Identity=51.3888888888889, Blast_Score=221, Evalue=3e-59,
Organism=Escherichia coli, GI1790552, Length=217, Percent_Identity=45.6221198156682, Blast_Score=190, Evalue=7e-50,
Organism=Escherichia coli, GI87082012, Length=221, Percent_Identity=38.9140271493213, Blast_Score=150, Evalue=5e-38,
Organism=Escherichia coli, GI1786784, Length=222, Percent_Identity=38.2882882882883, Blast_Score=142, Evalue=1e-35,
Organism=Escherichia coli, GI1787375, Length=219, Percent_Identity=35.1598173515982, Blast_Score=142, Evalue=1e-35,
Organism=Escherichia coli, GI1790860, Length=219, Percent_Identity=38.8127853881278, Blast_Score=134, Evalue=4e-33,
Organism=Escherichia coli, GI1786599, Length=220, Percent_Identity=37.7272727272727, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1789809, Length=233, Percent_Identity=33.4763948497854, Blast_Score=128, Evalue=3e-31,
Organism=Escherichia coli, GI1786911, Length=219, Percent_Identity=35.6164383561644, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI2367329, Length=229, Percent_Identity=34.4978165938865, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1788394, Length=226, Percent_Identity=33.6283185840708, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1787229, Length=222, Percent_Identity=30.1801801801802, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1790863, Length=229, Percent_Identity=29.2576419213974, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1788550, Length=162, Percent_Identity=31.4814814814815, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI145693140, Length=235, Percent_Identity=28.0851063829787, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1790437, Length=117, Percent_Identity=35.8974358974359, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790299, Length=108, Percent_Identity=36.1111111111111, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787487, Length=108, Percent_Identity=37.037037037037, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788191, Length=121, Percent_Identity=33.8842975206612, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI48994928, Length=128, Percent_Identity=32.8125, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788713, Length=117, Percent_Identity=31.6239316239316, Blast_Score=61, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6322000, Length=176, Percent_Identity=26.7045454545455, Blast_Score=72, Evalue=9e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24438; Mature: 24438

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDADTMRILLVEDDRMIAEGVRKALKADGCAVDWVQDGEAALTALGGETYDLMLLDLGLP
CCCCCEEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCCCEEEEEEECCCC
KRDGVEVLRTARARGHALPVLIITARDAVPDRVKGLDAGADDYLVKPFDLDELAARMRAL
CCCCHHHHHHHHHCCCCCEEEEEEECCCCCHHHHCCCCCCCCCEECCCCHHHHHHHHHHH
IRRQAGRSESVIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLE
HHHHCCCCHHHHHCCCEEECCCCCEEEECCCCEEECHHHHHHHHHHHHCCCCHHHHHHHH
EKMYGWGEEIGSNTVEVYIHALRKKLGSDLIRNVRGLGYMVVKEA
HHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC
>Mature Secondary Structure
MDADTMRILLVEDDRMIAEGVRKALKADGCAVDWVQDGEAALTALGGETYDLMLLDLGLP
CCCCCEEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCCCEEEEEEECCCC
KRDGVEVLRTARARGHALPVLIITARDAVPDRVKGLDAGADDYLVKPFDLDELAARMRAL
CCCCHHHHHHHHHCCCCCEEEEEEECCCCCHHHHCCCCCCCCCEECCCCHHHHHHHHHHH
IRRQAGRSESVIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLE
HHHHCCCCHHHHHCCCEEECCCCCEEEECCCCEEECHHHHHHHHHHHHCCCCHHHHHHHH
EKMYGWGEEIGSNTVEVYIHALRKKLGSDLIRNVRGLGYMVVKEA
HHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]