Click here to switch to the map view.

The map label for this gene is ycjN [C]

Identifier: 238028485

GI number: 238028485

Start: 3337640

End: 3338968

Strand: Reverse

Name: ycjN [C]

Synonym: bglu_1g29490

Alternate gene names: 238028485

Gene position: 3338968-3337640 (Counterclockwise)

Preceding gene: 238028486

Following gene: 238028484

Centisome position: 85.47

GC content: 67.57

Gene sequence:

>1329_bases
ATGCAACGACCGACGCTCATCGCCGCCGCCACGCGAATCCTCGCGGGCGCCGCGCTCGCGTCGTCGGCGCTGGCCGCGCA
GGCGGCCACGCTGACGATCGCCACGCTGAACAACCCCGACATGATCGAGCTGAAGAAGCTCTCGCCGGCGTTCGAGAAGG
CCAACCCGGACATCAAGCTGAACTGGGTGATTCTGGAAGAGAACGTGCTGCGCCAGCGCGCCACCACCGACATCACCACC
GGCAGCGGCCAGTTCGACGTGATGGCGATCGGCACCTACGAGGCGCCGCAATGGGGCAGGCGCGGCTGGCTCTCGCCGAT
GACGGGCCTGCCCGCCGACTACGATCTGAACGACGTCGTGAAGACGGCGCGCGACAGCCTCTCGTACAACGGCCAGCTCT
ACGCGCTGCCGTTCTACGTCGAGAGCTCGATGACCTACTACCGCAAGGACCTGTTCGCAGCCAAGGGCCTGACGATGCCG
GCCCAGCCGACTTACGACCAGATCCGGCAGTTCGCCGACAAGCTGACCGACAAGGCCAACGGCGTCTACGGCATCTGCCT
GCGCGGCAAGGCCGGCTGGGGCGAGAACATGGCCTACGTGTCGACCGTGGTGAACACCTTCGGCGGCCGCTGGTTCGACG
AGAACTGGAACGCCCAGCTCACCTCGCCGGAGTGGAAGAAGGCGGTCACCTTCTACGTGGACCTGCTGAAGGCCGACGGC
CCCCCGGGAGCGAGCTCGAACGGCTTCAACGAGAACCTGACGCTGACCGCCTCGGGCAAGTGCGCGATGTGGATCGACGC
CACGGTGGCGGCCGGCATGCTCTACAACAAGCAGCAATCGCAGGTGGCCGACAAGATCGGCTTCGCGGCCGCGCCGGTGG
CCGTCACGCCGAAGGGTTCGCACTGGCTGTGGGCCTGGGCGCTGGCGATCCCCAAGACGTCCAAGCAGCAGGACGCCGCC
AGGAAGTTCATCACCTGGGCGACCTCGAAGCAGTACGTGGAGGCGGTGGCCAAGGACGAGGGCTGGGCCTCGGTGCCGCC
GGGCACGCGCCAGTCCACCTACGCGCGCCCCGAGTACAAGGCCGCCGCGCCGTTCTCGGACTTCGTGCTGAAGGCGATCG
AGACGGCCGACGTCAACGATCCGTCGCTGAAGAAGGTGCCGTACACGGGCGTGCAATACGTCGGGATTCCTGAATTCCAG
TCGTTCGGCACGGTCGTCGGCCAGTCGATCGCGGGCGCGTTGGCCGGCCAGATGACGGTCGACCAGGCGCTCGCCGCGGG
CCAGGCCGCGGCCGACCGCGCGGTCCGTCAGGCCGGCTACAAGAAGTAA

Upstream 100 bases:

>100_bases
GGGATGCAGCAAGGCGGGTAAGGCGCGCGCACCACCGCGCGGCGCCCGCATCACGATGGACAGACCCCAGACGACAAGCC
GATAACACAGGAGACATGCC

Downstream 100 bases:

>100_bases
GCCGGGCCAGTCGCGCGACCCGTGCCGGCCAGGCGCGGGTCGCCTCGCCGCAAGGCGCACGCGCTGCCGCGCGGCATGCG
GGTGCGCCAGTTTCAGGAGG

Product: sugar ABC transporter periplasmic ligand binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MQRPTLIAAATRILAGAALASSALAAQAATLTIATLNNPDMIELKKLSPAFEKANPDIKLNWVILEENVLRQRATTDITT
GSGQFDVMAIGTYEAPQWGRRGWLSPMTGLPADYDLNDVVKTARDSLSYNGQLYALPFYVESSMTYYRKDLFAAKGLTMP
AQPTYDQIRQFADKLTDKANGVYGICLRGKAGWGENMAYVSTVVNTFGGRWFDENWNAQLTSPEWKKAVTFYVDLLKADG
PPGASSNGFNENLTLTASGKCAMWIDATVAAGMLYNKQQSQVADKIGFAAAPVAVTPKGSHWLWAWALAIPKTSKQQDAA
RKFITWATSKQYVEAVAKDEGWASVPPGTRQSTYARPEYKAAAPFSDFVLKAIETADVNDPSLKKVPYTGVQYVGIPEFQ
SFGTVVGQSIAGALAGQMTVDQALAAGQAAADRAVRQAGYKK

Sequences:

>Translated_442_residues
MQRPTLIAAATRILAGAALASSALAAQAATLTIATLNNPDMIELKKLSPAFEKANPDIKLNWVILEENVLRQRATTDITT
GSGQFDVMAIGTYEAPQWGRRGWLSPMTGLPADYDLNDVVKTARDSLSYNGQLYALPFYVESSMTYYRKDLFAAKGLTMP
AQPTYDQIRQFADKLTDKANGVYGICLRGKAGWGENMAYVSTVVNTFGGRWFDENWNAQLTSPEWKKAVTFYVDLLKADG
PPGASSNGFNENLTLTASGKCAMWIDATVAAGMLYNKQQSQVADKIGFAAAPVAVTPKGSHWLWAWALAIPKTSKQQDAA
RKFITWATSKQYVEAVAKDEGWASVPPGTRQSTYARPEYKAAAPFSDFVLKAIETADVNDPSLKKVPYTGVQYVGIPEFQ
SFGTVVGQSIAGALAGQMTVDQALAAGQAAADRAVRQAGYKK
>Mature_442_residues
MQRPTLIAAATRILAGAALASSALAAQAATLTIATLNNPDMIELKKLSPAFEKANPDIKLNWVILEENVLRQRATTDITT
GSGQFDVMAIGTYEAPQWGRRGWLSPMTGLPADYDLNDVVKTARDSLSYNGQLYALPFYVESSMTYYRKDLFAAKGLTMP
AQPTYDQIRQFADKLTDKANGVYGICLRGKAGWGENMAYVSTVVNTFGGRWFDENWNAQLTSPEWKKAVTFYVDLLKADG
PPGASSNGFNENLTLTASGKCAMWIDATVAAGMLYNKQQSQVADKIGFAAAPVAVTPKGSHWLWAWALAIPKTSKQQDAA
RKFITWATSKQYVEAVAKDEGWASVPPGTRQSTYARPEYKAAAPFSDFVLKAIETADVNDPSLKKVPYTGVQYVGIPEFQ
SFGTVVGQSIAGALAGQMTVDQALAAGQAAADRAVRQAGYKK

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 47851; Mature: 47851

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRPTLIAAATRILAGAALASSALAAQAATLTIATLNNPDMIELKKLSPAFEKANPDIKL
CCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCEEEEECCCCHHHHCCCCEEE
NWVILEENVLRQRATTDITTGSGQFDVMAIGTYEAPQWGRRGWLSPMTGLPADYDLNDVV
EEEEECCHHHHHHHCCCEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHH
KTARDSLSYNGQLYALPFYVESSMTYYRKDLFAAKGLTMPAQPTYDQIRQFADKLTDKAN
HHHHHHCCCCCEEEEEEEEEECCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC
GVYGICLRGKAGWGENMAYVSTVVNTFGGRWFDENWNAQLTSPEWKKAVTFYVDLLKADG
CEEEEEEECCCCCCCCHHHHHHHHHHHCCCEECCCCCCEECCHHHHHHHHHHHHHHHCCC
PPGASSNGFNENLTLTASGKCAMWIDATVAAGMLYNKQQSQVADKIGFAAAPVAVTPKGS
CCCCCCCCCCCCEEEEECCCEEEEEEHHHHHHHHHCCHHHHHHHHHCCCCCCEEECCCCC
HWLWAWALAIPKTSKQQDAARKFITWATSKQYVEAVAKDEGWASVPPGTRQSTYARPEYK
CEEEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
AAAPFSDFVLKAIETADVNDPSLKKVPYTGVQYVGIPEFQSFGTVVGQSIAGALAGQMTV
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
DQALAAGQAAADRAVRQAGYKK
HHHHHHCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQRPTLIAAATRILAGAALASSALAAQAATLTIATLNNPDMIELKKLSPAFEKANPDIKL
CCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCEEEEECCCCHHHHCCCCEEE
NWVILEENVLRQRATTDITTGSGQFDVMAIGTYEAPQWGRRGWLSPMTGLPADYDLNDVV
EEEEECCHHHHHHHCCCEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHH
KTARDSLSYNGQLYALPFYVESSMTYYRKDLFAAKGLTMPAQPTYDQIRQFADKLTDKAN
HHHHHHCCCCCEEEEEEEEEECCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC
GVYGICLRGKAGWGENMAYVSTVVNTFGGRWFDENWNAQLTSPEWKKAVTFYVDLLKADG
CEEEEEEECCCCCCCCHHHHHHHHHHHCCCEECCCCCCEECCHHHHHHHHHHHHHHHCCC
PPGASSNGFNENLTLTASGKCAMWIDATVAAGMLYNKQQSQVADKIGFAAAPVAVTPKGS
CCCCCCCCCCCCEEEEECCCEEEEEEHHHHHHHHHCCHHHHHHHHHCCCCCCEEECCCCC
HWLWAWALAIPKTSKQQDAARKFITWATSKQYVEAVAKDEGWASVPPGTRQSTYARPEYK
CEEEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
AAAPFSDFVLKAIETADVNDPSLKKVPYTGVQYVGIPEFQSFGTVVGQSIAGALAGQMTV
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
DQALAAGQAAADRAVRQAGYKK
HHHHHHCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]