| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is amiC [H]
Identifier: 238028463
GI number: 238028463
Start: 3314466
End: 3315983
Strand: Direct
Name: amiC [H]
Synonym: bglu_1g29270
Alternate gene names: 238028463
Gene position: 3314466-3315983 (Clockwise)
Preceding gene: 238028462
Following gene: 238028465
Centisome position: 84.84
GC content: 67.98
Gene sequence:
>1518_bases ATGTCTCGAAAGATGTTGATCAAGCCGTTCCGGTCGATCGAATCGGCTGCCACCGTCACCCACAACTGGCGGCGTCGGCA GGTGCTCGTCGCGGGCGCCTCGACGCTCGTGCTCGGGCTGGTCGCGCCGAGTCTGGCGCGCGCCTCGTCGGTGCTCGGCG TGCGGGTCTGGCCCGCGCGCGACTACACGCGCGTGACGATCGAATCCGATCAGCCGCTGCAGGCCGCCCAGCAGTTGCTG CAAGGCCCCGATCGGCTGGTGGTCGACCTCGACGGGCTCGATCTCGACCAGGCACTGCGCGAACTCGTCTCGAAGATCAC GCCGAACGATCCGCAGATCCAGTCGGTGCGCGTCGGCCAGTACCAGCCGCACGTGGTACGCATGGTGTTCGATCTGAAAG GCTCGGTGAAGCCGCAGATGTTCACGCTGCCGCCGGTCGGCTCGTATCGCTACCGGCTGGTGTTCGACCTGTATCCGGCC GTCGCGCCCGATCCGCTGTCGGAGCTGATCGCGCAGACCGAGCGCAAGGAACAGCAGCTGAACGATTCGGTGCGCGCGCA GCAAGCGCAGCCGCCGCAGGCGACGCTGAACGGCCCCGGCACGCCGCCGCCCGCGGGCGGCGACAACAGCGACGCGTTCT TCCAGCGCTTCGCGCAGAACCCGGCGCCTGCGGCGCGGCCCTCGCCCTCCGCGCCGTCGAACCCGGCCAGGCCCGCCATC AAGCCGCCGCCCGTCATCGCGAAGCAGGACGACGACGACGGCGATTCGTCCTATGCGTTCACGGCGCCGAAGGGCAGGAA CGGCACGGTGCGGCTGCTCACGGTCGCGATCGACCCGGGCCACGGCGGCGAGGACCCGGGCGCGATCGGCGGCGCCGGCA CCTACGAGAAGCACATCGCGCTCGACATCGCCAAGCGGCTGCGCGCGAAGATCGACGGCACGCCCAACATGCGCTCGATG ATGACGCGCGACAACGACTTCTTCGTGCCGCTGAACGTGCGCGTGCAGAAGGCGCGGCGCGTCGGCGCCGACCTGTTCGT GTCGATCCATGCCGACGCGTTCACGACGCCGCAGGCGCACGGCTCGTCGGTGTTCGCGCTGTCCGATCACGGCGCGACCA GCGCCGCGGCACGCTGGATGGCCAACAAGGAGAACTCGTCGGACACCATCGGCGGGATCAACGTGAAGACCCAGGACGTG TCGGTCAACCGCGCGCTGTTCGACATGTCGACCACGGCGCAGATCCGCGACTCGCTGCGCTACGGCAACTTCGTGCTGAA GGAAGTCGGCACCATCAACAAGCTGCACAAGGGCTCGGTCGAGCAGGCCGGCTTCGCGGTGCTGAAGGCGCCCGACATTC CGTCGATCCTGGTCGAGACGGCCTTCATCAGCAATCCCGAGGAAGAGCGTCGCCTGAACGACGAAACCTATCGCGAACAG ATGGCCGACGCGATCTTTCGCGGCATCAAGCGCTATTTCGCGGCCAATCCGCCGCTCGCGAAGAACCGGATGGCCTAA
Upstream 100 bases:
>100_bases CCGGCACGCTGCTCGGCGTGCCGGATCTCGTGTTCGCGCTCGACATCGACGGCGACGGCCGCCGGCTCGACGCGCGGGCC TACAGCGCTTCAGGATACGC
Downstream 100 bases:
>100_bases AGCCCGGCCGCCGGTCCGCGGCGGTTTGCTGACGCCTTCGCCGCACCGCCACGCCGTCCAACGCAAAAGGCCTCGCGCGG CGCGGGCCGTGTTCAGGCCG
Product: N-acetylmuramoyl-L-alanine amidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 505; Mature: 504
Protein sequence:
>505_residues MSRKMLIKPFRSIESAATVTHNWRRRQVLVAGASTLVLGLVAPSLARASSVLGVRVWPARDYTRVTIESDQPLQAAQQLL QGPDRLVVDLDGLDLDQALRELVSKITPNDPQIQSVRVGQYQPHVVRMVFDLKGSVKPQMFTLPPVGSYRYRLVFDLYPA VAPDPLSELIAQTERKEQQLNDSVRAQQAQPPQATLNGPGTPPPAGGDNSDAFFQRFAQNPAPAARPSPSAPSNPARPAI KPPPVIAKQDDDDGDSSYAFTAPKGRNGTVRLLTVAIDPGHGGEDPGAIGGAGTYEKHIALDIAKRLRAKIDGTPNMRSM MTRDNDFFVPLNVRVQKARRVGADLFVSIHADAFTTPQAHGSSVFALSDHGATSAAARWMANKENSSDTIGGINVKTQDV SVNRALFDMSTTAQIRDSLRYGNFVLKEVGTINKLHKGSVEQAGFAVLKAPDIPSILVETAFISNPEEERRLNDETYREQ MADAIFRGIKRYFAANPPLAKNRMA
Sequences:
>Translated_505_residues MSRKMLIKPFRSIESAATVTHNWRRRQVLVAGASTLVLGLVAPSLARASSVLGVRVWPARDYTRVTIESDQPLQAAQQLL QGPDRLVVDLDGLDLDQALRELVSKITPNDPQIQSVRVGQYQPHVVRMVFDLKGSVKPQMFTLPPVGSYRYRLVFDLYPA VAPDPLSELIAQTERKEQQLNDSVRAQQAQPPQATLNGPGTPPPAGGDNSDAFFQRFAQNPAPAARPSPSAPSNPARPAI KPPPVIAKQDDDDGDSSYAFTAPKGRNGTVRLLTVAIDPGHGGEDPGAIGGAGTYEKHIALDIAKRLRAKIDGTPNMRSM MTRDNDFFVPLNVRVQKARRVGADLFVSIHADAFTTPQAHGSSVFALSDHGATSAAARWMANKENSSDTIGGINVKTQDV SVNRALFDMSTTAQIRDSLRYGNFVLKEVGTINKLHKGSVEQAGFAVLKAPDIPSILVETAFISNPEEERRLNDETYREQ MADAIFRGIKRYFAANPPLAKNRMA >Mature_504_residues SRKMLIKPFRSIESAATVTHNWRRRQVLVAGASTLVLGLVAPSLARASSVLGVRVWPARDYTRVTIESDQPLQAAQQLLQ GPDRLVVDLDGLDLDQALRELVSKITPNDPQIQSVRVGQYQPHVVRMVFDLKGSVKPQMFTLPPVGSYRYRLVFDLYPAV APDPLSELIAQTERKEQQLNDSVRAQQAQPPQATLNGPGTPPPAGGDNSDAFFQRFAQNPAPAARPSPSAPSNPARPAIK PPPVIAKQDDDDGDSSYAFTAPKGRNGTVRLLTVAIDPGHGGEDPGAIGGAGTYEKHIALDIAKRLRAKIDGTPNMRSMM TRDNDFFVPLNVRVQKARRVGADLFVSIHADAFTTPQAHGSSVFALSDHGATSAAARWMANKENSSDTIGGINVKTQDVS VNRALFDMSTTAQIRDSLRYGNFVLKEVGTINKLHKGSVEQAGFAVLKAPDIPSILVETAFISNPEEERRLNDETYREQM ADAIFRGIKRYFAANPPLAKNRMA
Specific function: Cell-wall hydrolase involved in septum cleavage during cell division [H]
COG id: COG0860
COG function: function code M; N-acetylmuramoyl-L-alanine amidase
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family [H]
Homologues:
Organism=Escherichia coli, GI87082163, Length=482, Percent_Identity=41.701244813278, Blast_Score=327, Evalue=1e-90, Organism=Escherichia coli, GI1788776, Length=249, Percent_Identity=45.7831325301205, Blast_Score=215, Evalue=7e-57, Organism=Escherichia coli, GI1790611, Length=229, Percent_Identity=39.3013100436681, Blast_Score=178, Evalue=6e-46,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021731 - InterPro: IPR002508 - InterPro: IPR006311 [H]
Pfam domain/function: PF01520 Amidase_3; PF11741 AMIN [H]
EC number: =3.5.1.28 [H]
Molecular weight: Translated: 54994; Mature: 54863
Theoretical pI: Translated: 9.97; Mature: 9.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRKMLIKPFRSIESAATVTHNWRRRQVLVAGASTLVLGLVAPSLARASSVLGVRVWPAR CCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHEEEEEEECCC DYTRVTIESDQPLQAAQQLLQGPDRLVVDLDGLDLDQALRELVSKITPNDPQIQSVRVGQ CCEEEEECCCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCC YQPHVVRMVFDLKGSVKPQMFTLPPVGSYRYRLVFDLYPAVAPDPLSELIAQTERKEQQL CCCHHEEEEECCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHH NDSVRAQQAQPPQATLNGPGTPPPAGGDNSDAFFQRFAQNPAPAARPSPSAPSNPARPAI HHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC KPPPVIAKQDDDDGDSSYAFTAPKGRNGTVRLLTVAIDPGHGGEDPGAIGGAGTYEKHIA CCCCCEECCCCCCCCCCEEEECCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHH LDIAKRLRAKIDGTPNMRSMMTRDNDFFVPLNVRVQKARRVGADLFVSIHADAFTTPQAH HHHHHHHHHHCCCCCCHHHHHCCCCCEEEEECHHHHHHHHCCCEEEEEEECCCCCCCCCC GSSVFALSDHGATSAAARWMANKENSSDTIGGINVKTQDVSVNRALFDMSTTAQIRDSLR CCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCHHEECCCHHHHHHHHHH YGNFVLKEVGTINKLHKGSVEQAGFAVLKAPDIPSILVETAFISNPEEERRLNDETYREQ HCCHHHHHHHHHHHHHCCCCHHCCEEEEECCCCCHHHHHHHHCCCCHHHHHCCHHHHHHH MADAIFRGIKRYFAANPPLAKNRMA HHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure SRKMLIKPFRSIESAATVTHNWRRRQVLVAGASTLVLGLVAPSLARASSVLGVRVWPAR CCCHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHEEEEEEECCC DYTRVTIESDQPLQAAQQLLQGPDRLVVDLDGLDLDQALRELVSKITPNDPQIQSVRVGQ CCEEEEECCCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCC YQPHVVRMVFDLKGSVKPQMFTLPPVGSYRYRLVFDLYPAVAPDPLSELIAQTERKEQQL CCCHHEEEEECCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHH NDSVRAQQAQPPQATLNGPGTPPPAGGDNSDAFFQRFAQNPAPAARPSPSAPSNPARPAI HHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC KPPPVIAKQDDDDGDSSYAFTAPKGRNGTVRLLTVAIDPGHGGEDPGAIGGAGTYEKHIA CCCCCEECCCCCCCCCCEEEECCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHH LDIAKRLRAKIDGTPNMRSMMTRDNDFFVPLNVRVQKARRVGADLFVSIHADAFTTPQAH HHHHHHHHHHCCCCCCHHHHHCCCCCEEEEECHHHHHHHHCCCEEEEEEECCCCCCCCCC GSSVFALSDHGATSAAARWMANKENSSDTIGGINVKTQDVSVNRALFDMSTTAQIRDSLR CCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCHHEECCCHHHHHHHHHH YGNFVLKEVGTINKLHKGSVEQAGFAVLKAPDIPSILVETAFISNPEEERRLNDETYREQ HCCHHHHHHHHHHHHHCCCCHHCCEEEEECCCCCHHHHHHHHCCCCHHHHHCCHHHHHHH MADAIFRGIKRYFAANPPLAKNRMA HHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]