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The map label for this gene is xerD [H]

Identifier: 238028460

GI number: 238028460

Start: 3311424

End: 3312449

Strand: Reverse

Name: xerD [H]

Synonym: bglu_1g29240

Alternate gene names: 238028460

Gene position: 3312449-3311424 (Counterclockwise)

Preceding gene: 238028461

Following gene: 238028458

Centisome position: 84.79

GC content: 71.73

Gene sequence:

>1026_bases
ATGAAGGATGCGAAGAACTTGAAGGCCGCCGCGGCGCCGGCCGCGGCCGGCAAGCCGCGTGGCGCGGCGGGCCGCAAACC
GCGCACGGCGGCCGGCTCGGCCAACGGGGCAGAGCCGCTCGGCGCAAGCCCGGAGCGCGAGGCGAGCCGGACCTCGATCG
AGCTGTTCTGCGATGCGCTCTGGCTCGAACATGGCCTGTCGCAGAACACGCTCGATGCCTACCGGCGCGACCTGACGCTG
TTCGCGCAATGGCTCGCGACCGTCCACGGCGCGAGCATCGACGCCGTGGACGAGGCGATGCTGACGGGCTACATCGCCGC
GCGCAGCGACGGCAAGGCCACCTCGTCGAACCGGCGCCTGTCGGTGTTCCGGCGCTACTACGGCTGGGCGCTGCGCGAGC
ACCGCGCCGCGCTCGATCCGACGCTGCGCCTCCTCTCCGCGAAGCAGCCGGCGCGGTTTCCGGCGACGCTCTCGGAGGCG
CAGGTCGAGGCGCTGCTCGCGGCGCCCGAGGTCGGGACCGCGCTCGGGCTGCGCGACCGCACCATGCTCGAGCTGATGTA
TGCGAGCGGGCTGCGCGTGAGCGAACTCGTGATGCTGAAGACCGTCGAGGTCGGGCTCAACGACGGCGTGGTGCGCGTGA
TGGGCAAGGGCTCGAAGGAGCGGCTGGTGCCGTTCGGCGAGGTCGCGCACGGCTGGATCGAGCGCTACCTGCGCGAGGCG
CGCCCGGCGCTGCTCGGCGCGCGCACCTCGGACGCGTTGTTCGTGACCGCGCGCGGCGAAGGCATGACGCGCCAGCAGTT
CTGGAACATCATCAAGCGCCACGCGATGCGAGCCGAGATCCGGGCGCACCTGTCGCCGCACACGCTGCGGCACGCGTTCG
CCACGCACCTGCTCAATCACGGCGCCGACCTGCGCGTCGTGCAGATGCTGCTCGGCCACAGCGACATCTCGACGACGCAG
ATCTACACGCACGTCGCGCGTGAACGGCTCAGGACGCTGCACGCCGCGCACCATCCGCGCGGTTGA

Upstream 100 bases:

>100_bases
CGCCGGCCAGGCGCTGCCTGACGGTGACGGCGCGCCGGTGGCGGCCGGCGCGCCGATGGAGCGCGCGAAGCGGCTGACGG
GTATCAAGGGCGCGAGGACC

Downstream 100 bases:

>100_bases
GGCCGCCCGCGCGCCGGCGGCGATGCCGCGGCGGCGACTGGCGCGCGGCCCCGTGCGCCTTACTCGCCGTAGGCCGGGTG
CTCGCGCAGCCGGTGCTTGA

Product: site-specific tyrosine recombinase XerD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MKDAKNLKAAAAPAAAGKPRGAAGRKPRTAAGSANGAEPLGASPEREASRTSIELFCDALWLEHGLSQNTLDAYRRDLTL
FAQWLATVHGASIDAVDEAMLTGYIAARSDGKATSSNRRLSVFRRYYGWALREHRAALDPTLRLLSAKQPARFPATLSEA
QVEALLAAPEVGTALGLRDRTMLELMYASGLRVSELVMLKTVEVGLNDGVVRVMGKGSKERLVPFGEVAHGWIERYLREA
RPALLGARTSDALFVTARGEGMTRQQFWNIIKRHAMRAEIRAHLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQ
IYTHVARERLRTLHAAHHPRG

Sequences:

>Translated_341_residues
MKDAKNLKAAAAPAAAGKPRGAAGRKPRTAAGSANGAEPLGASPEREASRTSIELFCDALWLEHGLSQNTLDAYRRDLTL
FAQWLATVHGASIDAVDEAMLTGYIAARSDGKATSSNRRLSVFRRYYGWALREHRAALDPTLRLLSAKQPARFPATLSEA
QVEALLAAPEVGTALGLRDRTMLELMYASGLRVSELVMLKTVEVGLNDGVVRVMGKGSKERLVPFGEVAHGWIERYLREA
RPALLGARTSDALFVTARGEGMTRQQFWNIIKRHAMRAEIRAHLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQ
IYTHVARERLRTLHAAHHPRG
>Mature_341_residues
MKDAKNLKAAAAPAAAGKPRGAAGRKPRTAAGSANGAEPLGASPEREASRTSIELFCDALWLEHGLSQNTLDAYRRDLTL
FAQWLATVHGASIDAVDEAMLTGYIAARSDGKATSSNRRLSVFRRYYGWALREHRAALDPTLRLLSAKQPARFPATLSEA
QVEALLAAPEVGTALGLRDRTMLELMYASGLRVSELVMLKTVEVGLNDGVVRVMGKGSKERLVPFGEVAHGWIERYLREA
RPALLGARTSDALFVTARGEGMTRQQFWNIIKRHAMRAEIRAHLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQ
IYTHVARERLRTLHAAHHPRG

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=292, Percent_Identity=57.1917808219178, Blast_Score=310, Evalue=1e-85,
Organism=Escherichia coli, GI1790244, Length=296, Percent_Identity=37.8378378378378, Blast_Score=165, Evalue=3e-42,
Organism=Escherichia coli, GI1790768, Length=168, Percent_Identity=34.5238095238095, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790767, Length=173, Percent_Identity=28.3236994219653, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37391; Mature: 37391

Theoretical pI: Translated: 10.80; Mature: 10.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDAKNLKAAAAPAAAGKPRGAAGRKPRTAAGSANGAEPLGASPEREASRTSIELFCDAL
CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
WLEHGLSQNTLDAYRRDLTLFAQWLATVHGASIDAVDEAMLTGYIAARSDGKATSSNRRL
HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHH
SVFRRYYGWALREHRAALDPTLRLLSAKQPARFPATLSEAQVEALLAAPEVGTALGLRDR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCHH
TMLELMYASGLRVSELVMLKTVEVGLNDGVVRVMGKGSKERLVPFGEVAHGWIERYLREA
HHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHCCCHHHHHHHHHHHHHHHH
RPALLGARTSDALFVTARGEGMTRQQFWNIIKRHAMRAEIRAHLSPHTLRHAFATHLLNH
HHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
GADLRVVQMLLGHSDISTTQIYTHVARERLRTLHAAHHPRG
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKDAKNLKAAAAPAAAGKPRGAAGRKPRTAAGSANGAEPLGASPEREASRTSIELFCDAL
CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
WLEHGLSQNTLDAYRRDLTLFAQWLATVHGASIDAVDEAMLTGYIAARSDGKATSSNRRL
HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHH
SVFRRYYGWALREHRAALDPTLRLLSAKQPARFPATLSEAQVEALLAAPEVGTALGLRDR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCHH
TMLELMYASGLRVSELVMLKTVEVGLNDGVVRVMGKGSKERLVPFGEVAHGWIERYLREA
HHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHCCCHHHHHHHHHHHHHHHH
RPALLGARTSDALFVTARGEGMTRQQFWNIIKRHAMRAEIRAHLSPHTLRHAFATHLLNH
HHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
GADLRVVQMLLGHSDISTTQIYTHVARERLRTLHAAHHPRG
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]