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The map label for this gene is ybaK [H]

Identifier: 238028458

GI number: 238028458

Start: 3309160

End: 3309651

Strand: Reverse

Name: ybaK [H]

Synonym: bglu_1g29220

Alternate gene names: 238028458

Gene position: 3309651-3309160 (Counterclockwise)

Preceding gene: 238028460

Following gene: 238028457

Centisome position: 84.72

GC content: 69.51

Gene sequence:

>492_bases
ATGAGCAAATCCCGACACGTATCCGAAACGCCGGCGACGCAGTGGCTGCGCCGCCACGGCATCGCCTTCGGCGAGCACAC
CTACGATTACGTCGAGCACGGCGGCACCGGCGAATCGGCGCGGCAGCTCGGCGTGGACGAGCACGCCGTCGTCAAGACGC
TGGTGATGGAGGACGAGCACGCCAGGCCGCTGGTGATCCTGATGCACGGCGACCGCACGGTGTCGACCAAGAACCTGGCT
CGGCAAATCGGCGCCAAGCGCGTCGAACCCTGCAAGCCCGAGGTCGCCAACCGCCACTCCGGCTACCTGGTCGGCGGCAC
CTCGCCGTTCGGCACGAAGAAGGCGATGCCGGTCTACGTCGAGGCGAGCGTGCTCGACCTGCCGTCGATCTTCGTCAACG
GCGGCCGGCGCGGCTACCTCGTGAGCCTCGCGCCGGCGGTGCTGACCGCGGTGCTCGGCGCGACGCCCGTGCAGTGCGCG
AGCGTCGACTGA

Upstream 100 bases:

>100_bases
TTTCGCAGGAAAACGTGCCGATCGTGCCATGCCCGCCCGGGCGCGGCAATCCGCCGAACGGACAATAGTGCTTCGCGGCG
CGCGCAATTAAAATGCGCGC

Downstream 100 bases:

>100_bases
GGGTTTCACCGGCGGCCCGGGCCGGCGCGCTTCGGTAGAATGGGCGCCGCCGCGGCCCGGCGCACGGCGCCGCTTTCCCA
TTCCTTCGTCGAAATCACGT

Product: ybaK/ebsC protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MSKSRHVSETPATQWLRRHGIAFGEHTYDYVEHGGTGESARQLGVDEHAVVKTLVMEDEHARPLVILMHGDRTVSTKNLA
RQIGAKRVEPCKPEVANRHSGYLVGGTSPFGTKKAMPVYVEASVLDLPSIFVNGGRRGYLVSLAPAVLTAVLGATPVQCA
SVD

Sequences:

>Translated_163_residues
MSKSRHVSETPATQWLRRHGIAFGEHTYDYVEHGGTGESARQLGVDEHAVVKTLVMEDEHARPLVILMHGDRTVSTKNLA
RQIGAKRVEPCKPEVANRHSGYLVGGTSPFGTKKAMPVYVEASVLDLPSIFVNGGRRGYLVSLAPAVLTAVLGATPVQCA
SVD
>Mature_162_residues
SKSRHVSETPATQWLRRHGIAFGEHTYDYVEHGGTGESARQLGVDEHAVVKTLVMEDEHARPLVILMHGDRTVSTKNLAR
QIGAKRVEPCKPEVANRHSGYLVGGTSPFGTKKAMPVYVEASVLDLPSIFVNGGRRGYLVSLAPAVLTAVLGATPVQCAS
VD

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro); has much weaker activity against Ala-tRNA(Pro). Probably compensates for the lack of Cys- tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak ac

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=160, Percent_Identity=36.25, Blast_Score=94, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17571; Mature: 17440

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSRHVSETPATQWLRRHGIAFGEHTYDYVEHGGTGESARQLGVDEHAVVKTLVMEDEH
CCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHCCCC
ARPLVILMHGDRTVSTKNLARQIGAKRVEPCKPEVANRHSGYLVGGTSPFGTKKAMPVYV
CCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEE
EASVLDLPSIFVNGGRRGYLVSLAPAVLTAVLGATPVQCASVD
EEEHHCCCHHEECCCCCEEEEEHHHHHHHHHHCCCCCEEECCC
>Mature Secondary Structure 
SKSRHVSETPATQWLRRHGIAFGEHTYDYVEHGGTGESARQLGVDEHAVVKTLVMEDEH
CCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHCCCC
ARPLVILMHGDRTVSTKNLARQIGAKRVEPCKPEVANRHSGYLVGGTSPFGTKKAMPVYV
CCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEE
EASVLDLPSIFVNGGRRGYLVSLAPAVLTAVLGATPVQCASVD
EEEHHCCCHHEECCCCCEEEEEHHHHHHHHHHCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10813833 [H]