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The map label for this gene is radC [C]

Identifier: 238028403

GI number: 238028403

Start: 3248899

End: 3249699

Strand: Direct

Name: radC [C]

Synonym: bglu_1g28670

Alternate gene names: 238028403

Gene position: 3248899-3249699 (Clockwise)

Preceding gene: 238028396

Following gene: 238028404

Centisome position: 83.17

GC content: 73.66

Gene sequence:

>801_bases
ATGCGTTCGGACCGCAATCGCATGGCGGGCGGCCCCGCTGCCGGGCACGACCCTCACGGCGCCGGAGCCGCCCCCGGGCC
CGCGCCGGCGCTTCGCCCGCCAGCGGCGCCGCCGGGCCGCCAATCCCCATGCCGGCGCCACAACGAACACCACGATCGGC
CGCGGGAACGGCTGCTCGATCGCGGCCCCGCCGCGCTGGCCGACCACGAACTGCTCGCGCTGCTGCTCGGCAACGGCATC
GCCGGGCCCGGCACGGCCGGCATCGCCGGGTCGGTGCTGCGGCACTTCGGATCGCTGCGCGCGCTGCTCGACGCGAGCCC
GGGCGCGATCAGCGCATTGTCCGGCATCGGCCCGGCGCGTACCGCGGTCTTGCTCGCCACCACCGAGCTGGTGCGCCGGG
CGCTCGTCGAACGCGCCAGCGAGCGCCCGCTCGTCGATTCGCCGGGCGCCGTGGAGGATTATCTGCGGCTGACGATCGGC
ACCCGGGCCCACGAGGTGTTCGTCTGTCTCTATCTGGATGCGCAGCACCGGCTCGTGCACGACGAGGAAGCCACCCACGG
CACGCTGACGCGGATGGCCGTCTATCCGCGCGAGATCGTGCGGCGGGCGCTGGAGCTGAAGGCAGCCGCCCTGATCGTGG
CGCATAATCACCCGTCCGGCGCGGTACGCCCGAGCGCCGAGGACCGGCGGCTCACGCGCGTGCTGCACGACGCGCTCGCG
CTCGTCGACGTGCGGCTGATCGATCACATCGTGGTAGGCGCGAGCGAGACGTTCTCGTTTGCCCAGGCGGGCCTGATGTG
A

Upstream 100 bases:

>100_bases
CGGCACAACGCAAAACCGCTATTGTAAGTCACCTGGGCGCGCGGGGCGGAATGCCGGACCACGGCCGCCGTCGGGCGCTC
CTCACCCGGAGAATCATCGC

Downstream 100 bases:

>100_bases
CGGACGGCGGACGAACGCGCAGGCCCGCTGCGGCAGCGCCGGCTGGCCGCCCGTTCTGATATGGCCCCATGGCCGCTGGC
AAGGCAACGGGCCCGGCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MRSDRNRMAGGPAAGHDPHGAGAAPGPAPALRPPAAPPGRQSPCRRHNEHHDRPRERLLDRGPAALADHELLALLLGNGI
AGPGTAGIAGSVLRHFGSLRALLDASPGAISALSGIGPARTAVLLATTELVRRALVERASERPLVDSPGAVEDYLRLTIG
TRAHEVFVCLYLDAQHRLVHDEEATHGTLTRMAVYPREIVRRALELKAAALIVAHNHPSGAVRPSAEDRRLTRVLHDALA
LVDVRLIDHIVVGASETFSFAQAGLM

Sequences:

>Translated_266_residues
MRSDRNRMAGGPAAGHDPHGAGAAPGPAPALRPPAAPPGRQSPCRRHNEHHDRPRERLLDRGPAALADHELLALLLGNGI
AGPGTAGIAGSVLRHFGSLRALLDASPGAISALSGIGPARTAVLLATTELVRRALVERASERPLVDSPGAVEDYLRLTIG
TRAHEVFVCLYLDAQHRLVHDEEATHGTLTRMAVYPREIVRRALELKAAALIVAHNHPSGAVRPSAEDRRLTRVLHDALA
LVDVRLIDHIVVGASETFSFAQAGLM
>Mature_266_residues
MRSDRNRMAGGPAAGHDPHGAGAAPGPAPALRPPAAPPGRQSPCRRHNEHHDRPRERLLDRGPAALADHELLALLLGNGI
AGPGTAGIAGSVLRHFGSLRALLDASPGAISALSGIGPARTAVLLATTELVRRALVERASERPLVDSPGAVEDYLRLTIG
TRAHEVFVCLYLDAQHRLVHDEEATHGTLTRMAVYPREIVRRALELKAAALIVAHNHPSGAVRPSAEDRRLTRVLHDALA
LVDVRLIDHIVVGASETFSFAQAGLM

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=221, Percent_Identity=38.4615384615385, Blast_Score=160, Evalue=7e-41,
Organism=Escherichia coli, GI2367100, Length=143, Percent_Identity=45.4545454545455, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1788312, Length=141, Percent_Identity=43.9716312056738, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1788997, Length=120, Percent_Identity=44.1666666666667, Blast_Score=109, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 28221; Mature: 28221

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSDRNRMAGGPAAGHDPHGAGAAPGPAPALRPPAAPPGRQSPCRRHNEHHDRPRERLLD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHH
RGPAALADHELLALLLGNGIAGPGTAGIAGSVLRHFGSLRALLDASPGAISALSGIGPAR
CCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHH
TAVLLATTELVRRALVERASERPLVDSPGAVEDYLRLTIGTRAHEVFVCLYLDAQHRLVH
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCHHHHC
DEEATHGTLTRMAVYPREIVRRALELKAAALIVAHNHPSGAVRPSAEDRRLTRVLHDALA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
LVDVRLIDHIVVGASETFSFAQAGLM
HHHHHHHHHHHHCCCHHHHHHHHCCC
>Mature Secondary Structure
MRSDRNRMAGGPAAGHDPHGAGAAPGPAPALRPPAAPPGRQSPCRRHNEHHDRPRERLLD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHH
RGPAALADHELLALLLGNGIAGPGTAGIAGSVLRHFGSLRALLDASPGAISALSGIGPAR
CCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHH
TAVLLATTELVRRALVERASERPLVDSPGAVEDYLRLTIGTRAHEVFVCLYLDAQHRLVH
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCHHHHC
DEEATHGTLTRMAVYPREIVRRALELKAAALIVAHNHPSGAVRPSAEDRRLTRVLHDALA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
LVDVRLIDHIVVGASETFSFAQAGLM
HHHHHHHHHHHHCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA