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The map label for this gene is yciO [H]

Identifier: 238027994

GI number: 238027994

Start: 2775553

End: 2776188

Strand: Reverse

Name: yciO [H]

Synonym: bglu_1g24430

Alternate gene names: 238027994

Gene position: 2776188-2775553 (Counterclockwise)

Preceding gene: 238027995

Following gene: 238027993

Centisome position: 71.07

GC content: 69.5

Gene sequence:

>636_bases
ATGTCCCAGTTCTTCAGGATTCACCCGGAAAACCCGCAGCCGCGGCTGGTGCGCCAGGCAGTCGAGATCGTGAAGCAGGG
CGGCGTGATCGCCATGCCGACCGATTCGAGCTACGCGCTCGCCTGCCAGCTCGACGACCGCGCGGCCGTCGAGCGCGTGC
GCCGCATCCGCGGCCTCGACGAGAAGCAGTTGCTGTCGCTGCTGGTGCGCGACCTGTCGGAGCTCGCGAACTTCGCGATG
GTCGACAACCACCAGTACCGGCTGATCAAGTCGGTCACGCCCGGTCCCTACGTGTTCGTGCTGCAGGCCACCAAGGAGGT
GCCGCGCCGGCTTTCGCATCCGTCGCGCAAGACCATCGGGCTGCGCGTGCCGGACCACGCGATCACGCTGGCGGTGCTGG
AGGCGCTAGGCGAGCCGCTGCTCGGCACCACGCTGATCCTGCCGCCCGACACCGATCCGCTCAACGATCCGGAGGAGATC
CGCGAACGCCTCGAAAAACAGGTCGATCTCGTGATCGACGGCGGCGCGTGCCCGCGCGAGCCATCCACGATCGTCGACCT
GACCGGCGCCGAGCCGGTGCTGGTACGCGCCGGGCGCGGGCCGCTCGAGCCGTTCGGGCTCGGCGCGCACGCCTGA

Upstream 100 bases:

>100_bases
GAGCGCTGGCTCTGACATGATCCAAGGCCGCGCCAGGTTCGCGCGGCGCGCCCCCGGCGCATGAGGCGCCCGGGCAATGC
CCCTCTTCAGCACAGTCCCC

Downstream 100 bases:

>100_bases
GCGCAGTTTATTGCGTGCCGCAACGCGAGCCCGGCATGGCGGCGCCCGCGTTTCGGTGTTCGACTTTTCCTGCTTGTTAC
AATATCGCGCTATGGACAAC

Product: Sua5/YciO/YrdC/YwlC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MSQFFRIHPENPQPRLVRQAVEIVKQGGVIAMPTDSSYALACQLDDRAAVERVRRIRGLDEKQLLSLLVRDLSELANFAM
VDNHQYRLIKSVTPGPYVFVLQATKEVPRRLSHPSRKTIGLRVPDHAITLAVLEALGEPLLGTTLILPPDTDPLNDPEEI
RERLEKQVDLVIDGGACPREPSTIVDLTGAEPVLVRAGRGPLEPFGLGAHA

Sequences:

>Translated_211_residues
MSQFFRIHPENPQPRLVRQAVEIVKQGGVIAMPTDSSYALACQLDDRAAVERVRRIRGLDEKQLLSLLVRDLSELANFAM
VDNHQYRLIKSVTPGPYVFVLQATKEVPRRLSHPSRKTIGLRVPDHAITLAVLEALGEPLLGTTLILPPDTDPLNDPEEI
RERLEKQVDLVIDGGACPREPSTIVDLTGAEPVLVRAGRGPLEPFGLGAHA
>Mature_210_residues
SQFFRIHPENPQPRLVRQAVEIVKQGGVIAMPTDSSYALACQLDDRAAVERVRRIRGLDEKQLLSLLVRDLSELANFAMV
DNHQYRLIKSVTPGPYVFVLQATKEVPRRLSHPSRKTIGLRVPDHAITLAVLEALGEPLLGTTLILPPDTDPLNDPEEIR
ERLEKQVDLVIDGGACPREPSTIVDLTGAEPVLVRAGRGPLEPFGLGAHA

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Homo sapiens, GI58761510, Length=180, Percent_Identity=32.7777777777778, Blast_Score=68, Evalue=6e-12,
Organism=Escherichia coli, GI87081864, Length=205, Percent_Identity=57.0731707317073, Blast_Score=245, Evalue=2e-66,
Organism=Escherichia coli, GI2367210, Length=184, Percent_Identity=27.7173913043478, Blast_Score=62, Evalue=2e-11,
Organism=Drosophila melanogaster, GI78707274, Length=189, Percent_Identity=29.1005291005291, Blast_Score=75, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 23252; Mature: 23121

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQFFRIHPENPQPRLVRQAVEIVKQGGVIAMPTDSSYALACQLDDRAAVERVRRIRGLD
CCCCEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHCCC
EKQLLSLLVRDLSELANFAMVDNHQYRLIKSVTPGPYVFVLQATKEVPRRLSHPSRKTIG
HHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEECHHHHHHHHCCCCCCEEE
LRVPDHAITLAVLEALGEPLLGTTLILPPDTDPLNDPEEIRERLEKQVDLVIDGGACPRE
EECCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHEEEEEECCCCCCC
PSTIVDLTGAEPVLVRAGRGPLEPFGLGAHA
CCEEEEECCCCEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure 
SQFFRIHPENPQPRLVRQAVEIVKQGGVIAMPTDSSYALACQLDDRAAVERVRRIRGLD
CCCEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHCCC
EKQLLSLLVRDLSELANFAMVDNHQYRLIKSVTPGPYVFVLQATKEVPRRLSHPSRKTIG
HHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEECHHHHHHHHCCCCCCEEE
LRVPDHAITLAVLEALGEPLLGTTLILPPDTDPLNDPEEIRERLEKQVDLVIDGGACPRE
EECCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHEEEEEECCCCCCC
PSTIVDLTGAEPVLVRAGRGPLEPFGLGAHA
CCEEEEECCCCEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]