| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238027881
Identifier: 238027881
GI number: 238027881
Start: 2543410
End: 2544543
Strand: Reverse
Name: 238027881
Synonym: bglu_1g23140
Alternate gene names: NA
Gene position: 2544543-2543410 (Counterclockwise)
Preceding gene: 238027882
Following gene: 238027880
Centisome position: 65.14
GC content: 71.43
Gene sequence:
>1134_bases ATGCGAAAAGTCATGGTGTACTGGATGCTGCTGCTGTTCGCGCAAGTCGTGCCCGGCGCCGCGGGCGCCGCCCAGGCCGG CCCGGCGAGCGGCACGGCCGCCGCCGCGCCCGCCGCCGAGCGCGCGGACCGCCTGCCCGCCTATACGCCGCGCTTCGGGC GCACGCGTCCGGTCGTGGCCGTGGTCGGCGAGAACTACTACACCGAACTGACCGATTACGTGGTGCCCTACGGCATCGTC GCGGAATCGGGCGCGGCCGACCTGGTCGCGCTCGCGACGAAGCCCGGCCCGATCCGGATGTTTCCGGCGCCGATGAACCT GATCCCCGACGAGACCACCGCACAGTTCGACCAGCGCGTGCCCGAAGGCGCCGACTACGTGATCGTGCCCGCCGTGCATC GCGACAGCGACCCGGCGCTGATCGCCTGGGTGGCCGGGCAGGCGAAGAAGGGCGCGACCGTGATCGGGGTGTGCGACGGC GTGTGGGTGGTCGCCCGCGCGGGCCTGCTGGACGGCCGCCGTGCGACCGGCCACTGGTACTCGATGGACGATCTGCGCAA GAAGTTCACCGATACGCGCTGGGTCGACGGCAAGCGCTACGTCTCCGACGGCAAGGTCGTCACGACCACCGGCGTGACCG CGACGATTCCCGTGTCGCTCGCACTCGTGGAGGCCATCGCCGGCCGTGCGCGTGCGCTGCAGGTGGGCGAGCGCCTCGGC CGCCCCGCCTGGTCGTCGGAGATCGCGAGCGAGCGCTTCAGCCTCGGCTTGCCGGCGATGGCGACGATTGCCGGCAACTA CGTGCAGTTCTGGGCTCACGAGGATTACGGCATTCCGATCGCGCCGGGCGTCGACGAAATCGCGCTGGTGCTGGAGGCGG ACGCGTATTCGACGACGTTCCGTTCGACCGCGTACACCGTCGCCGCGAATCGCGAGCCGCTGCGCACGCGCCGCGGGCTG ACGATCGTGCCCGACCGGGTCGCGGGCGTCGATGCGCCGGCGCGCATGCTGCCGGCACCCGTCACGCAGCATCCGCTGCA CGCGCTCGACGCGTCGCTGGAGGCGATCGCCACCGAGTTCGGCAAGCGCACGGCCGCATGGGTGGCGCTGCAGATGCAAT ACCCCGGCTACTGA
Upstream 100 bases:
>100_bases TGACCTTCAACGTCGTGCTGCCCCCGGCCGCCGCGTCGTGACGCGCCCCGCGGGCCGCGCGCCGACGGCCCCGATCCATC CCATCCACGGAGAAGTTTCG
Downstream 100 bases:
>100_bases GCCGCGCGCGTGCGCGCGCCGTTCGCCCCGCTCACCCCGCTCATCCCGATACCCGCCTGGAGAGGATTTTCATGCAGATG CATACGATGGCGCGCCGCTG
Product: ThiJ/PfpI family protein
Products: NA
Alternate protein names: ThiJ/PfpI Domain-Containing Protein; ThiJ/PfpI Family Protein; Transcriptional Regulator AraC Family; AraC Family Transcriptional Regulator; ThiJ/PfpI Domain Protein; Transcriptional Regulator SyrB; DJ-1/PfpI Family; ThiJ/PfpI; Transcription Regulator Protein; GATase1_AraC_1 Family Transcriptional Regulator
Number of amino acids: Translated: 377; Mature: 377
Protein sequence:
>377_residues MRKVMVYWMLLLFAQVVPGAAGAAQAGPASGTAAAAPAAERADRLPAYTPRFGRTRPVVAVVGENYYTELTDYVVPYGIV AESGAADLVALATKPGPIRMFPAPMNLIPDETTAQFDQRVPEGADYVIVPAVHRDSDPALIAWVAGQAKKGATVIGVCDG VWVVARAGLLDGRRATGHWYSMDDLRKKFTDTRWVDGKRYVSDGKVVTTTGVTATIPVSLALVEAIAGRARALQVGERLG RPAWSSEIASERFSLGLPAMATIAGNYVQFWAHEDYGIPIAPGVDEIALVLEADAYSTTFRSTAYTVAANREPLRTRRGL TIVPDRVAGVDAPARMLPAPVTQHPLHALDASLEAIATEFGKRTAAWVALQMQYPGY
Sequences:
>Translated_377_residues MRKVMVYWMLLLFAQVVPGAAGAAQAGPASGTAAAAPAAERADRLPAYTPRFGRTRPVVAVVGENYYTELTDYVVPYGIV AESGAADLVALATKPGPIRMFPAPMNLIPDETTAQFDQRVPEGADYVIVPAVHRDSDPALIAWVAGQAKKGATVIGVCDG VWVVARAGLLDGRRATGHWYSMDDLRKKFTDTRWVDGKRYVSDGKVVTTTGVTATIPVSLALVEAIAGRARALQVGERLG RPAWSSEIASERFSLGLPAMATIAGNYVQFWAHEDYGIPIAPGVDEIALVLEADAYSTTFRSTAYTVAANREPLRTRRGL TIVPDRVAGVDAPARMLPAPVTQHPLHALDASLEAIATEFGKRTAAWVALQMQYPGY >Mature_377_residues MRKVMVYWMLLLFAQVVPGAAGAAQAGPASGTAAAAPAAERADRLPAYTPRFGRTRPVVAVVGENYYTELTDYVVPYGIV AESGAADLVALATKPGPIRMFPAPMNLIPDETTAQFDQRVPEGADYVIVPAVHRDSDPALIAWVAGQAKKGATVIGVCDG VWVVARAGLLDGRRATGHWYSMDDLRKKFTDTRWVDGKRYVSDGKVVTTTGVTATIPVSLALVEAIAGRARALQVGERLG RPAWSSEIASERFSLGLPAMATIAGNYVQFWAHEDYGIPIAPGVDEIALVLEADAYSTTFRSTAYTVAANREPLRTRRGL TIVPDRVAGVDAPARMLPAPVTQHPLHALDASLEAIATEFGKRTAAWVALQMQYPGY
Specific function: Unknown
COG id: COG0693
COG function: function code R; Putative intracellular protease/amidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40347; Mature: 40347
Theoretical pI: Translated: 7.69; Mature: 7.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKVMVYWMLLLFAQVVPGAAGAAQAGPASGTAAAAPAAERADRLPAYTPRFGRTRPVVA CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEE VVGENYYTELTDYVVPYGIVAESGAADLVALATKPGPIRMFPAPMNLIPDETTAQFDQRV EECCCHHHHHHHHHCCCCEEECCCCCCEEEEECCCCCEEECCCCCCCCCCCHHHHHHHCC PEGADYVIVPAVHRDSDPALIAWVAGQAKKGATVIGVCDGVWVVARAGLLDGRRATGHWY CCCCCEEEEEEEECCCCCEEEEEEECCCCCCCEEEEECCCCEEHHHHCCCCCCCCCCCCC SMDDLRKKFTDTRWVDGKRYVSDGKVVTTTGVTATIPVSLALVEAIAGRARALQVGERLG CHHHHHHHHCCCEECCCCEEECCCCEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHC RPAWSSEIASERFSLGLPAMATIAGNYVQFWAHEDYGIPIAPGVDEIALVLEADAYSTTF CCCHHHHHHHHHHHCCCCHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCC RSTAYTVAANREPLRTRRGLTIVPDRVAGVDAPARMLPAPVTQHPLHALDASLEAIATEF CCEEEEEECCCCCHHHHCCCEECCHHHCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHH GKRTAAWVALQMQYPGY CCCEEEEEEEEEECCCC >Mature Secondary Structure MRKVMVYWMLLLFAQVVPGAAGAAQAGPASGTAAAAPAAERADRLPAYTPRFGRTRPVVA CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEE VVGENYYTELTDYVVPYGIVAESGAADLVALATKPGPIRMFPAPMNLIPDETTAQFDQRV EECCCHHHHHHHHHCCCCEEECCCCCCEEEEECCCCCEEECCCCCCCCCCCHHHHHHHCC PEGADYVIVPAVHRDSDPALIAWVAGQAKKGATVIGVCDGVWVVARAGLLDGRRATGHWY CCCCCEEEEEEEECCCCCEEEEEEECCCCCCCEEEEECCCCEEHHHHCCCCCCCCCCCCC SMDDLRKKFTDTRWVDGKRYVSDGKVVTTTGVTATIPVSLALVEAIAGRARALQVGERLG CHHHHHHHHCCCEECCCCEEECCCCEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHC RPAWSSEIASERFSLGLPAMATIAGNYVQFWAHEDYGIPIAPGVDEIALVLEADAYSTTF CCCHHHHHHHHHHHCCCCHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCC RSTAYTVAANREPLRTRRGLTIVPDRVAGVDAPARMLPAPVTQHPLHALDASLEAIATEF CCEEEEEECCCCCHHHHCCCEECCHHHCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHH GKRTAAWVALQMQYPGY CCCEEEEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA