| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238027879
Identifier: 238027879
GI number: 238027879
Start: 2541282
End: 2542559
Strand: Reverse
Name: 238027879
Synonym: bglu_1g23120
Alternate gene names: NA
Gene position: 2542559-2541282 (Counterclockwise)
Preceding gene: 238027880
Following gene: 238027878
Centisome position: 65.09
GC content: 71.05
Gene sequence:
>1278_bases ATGACGCGCCGAGCCTGCATCGCGTTGGCCGTGCTGACGTGCTGCGCGACGAGCGTGTGCCGTGCCGACGACGCGGAAGC GGCGGGCCTCGCGCTGGCCGATGCGACGCCCGTGCAGACGGTCGACGAGCGCAACTACCGGTTCAGCATCGAACCGGGCC TGCGGCTCGCCGAGGTGCGCCCTGGGGGCGGTTTGCGCACGGCCGGGCGGCTCTCGCTCGACCTGTTTGCGCGGCATGCG CTGGCGGGCGGCTGGAGCGTGAACTTCGCCGATCGGCTCGACCTGAACGGCCCGCTGCGCTTCGACGGCGACGCGGCGGC GATCAACACGCTGAAGGAACTGTACCTGGACGGCCGGCTGGGCGGCGGCAAGACGCTGCTGCAGGCCGGCCGCGTCAACG TGCGGCTCGGCGTTGCGACCGGCTACAACCCGACCGATTTCCTTCGCGACAACGCGGTGCGCTCGGTGACCTCGGTGGAT CCGGCGAGCCTGCGCGAGAACCGGCTCGGCACCGTGATGCTGCGCGGCCAGCAGCTGTGGAGCGGCGGCTCGGCCAGTGC GCTCGTCGCGCCGCGCGTCGCGGACCGTCCGAGCGATGCGTCGTACTCGCCGGATTTCGGCGCGACCAACCAGCGTACAC GCTGGCTGCTGCAGTTCAGCCAGCGCATGGTGCTGGACCTCACGCCGCAGTTCATGGTGTACCACGACGGTAAGCCGGGC AGTTCGCCGCAATTCGGGCTCACGCTCGATCATCTCGTGAACAATGCCTGCGTGACCTATGCCGAGTGGTCGGGCGGCCG CGGGCCCTCGACGCTCGCGCGCGCGCTGGGGCGCCCGTACGGCGACGTCGCGTTTCGCTGGAAACTGGCGGCCGGGCTGA CGTGCACCACGTCGCGCAACCTGTCCGTCACGCTCGAATACGACCGCGACGGCGCCGCGCTGGACCGTGCCGGCTGGCGG GCATTGCGCAGCGGGCCGCCCGCCGCCTATGCCGCCTATCGCGCGCTGGCCGCCGCGCAGCAGGATCCCGTCACGCGCGA CGCCGTGTTCATGATGGCGCGCTGGCAGGACGCGTGGATTCAGCGGCTCGACCTGTCGGGATTCGTGCGGATGAACCTCG CCGACCGCAGCCGGCTGACCTGGCTCGAGGCCCGCTACCGGTTCGCGCGCACCGACGTCGCCCTGCAATGGCAGATCGAT GCCGGCGCCTCGTCGACCGAGTTCGGCGCGCTGCCGCAGTCGAACCTGTGGCAACTGCTCGTCAAGCACTACCTCTGA
Upstream 100 bases:
>100_bases ATCCGAACCTGGTGACGGTGATGCGCTATGCGGACTATGTCGCGCGCGAGATTCCCGACGCGTGGTTCCAGTCCGATTTC ATGGCGCGTTTCGAGCCTCA
Downstream 100 bases:
>100_bases CCCGGCATCGGCACGGCGCATCCGATCGAGCCGATCCACGCGGCGCGCCGGCAGGGCGCCGCATCCTTCCAGGAGATTTC CATGAAACGCTATGTGACCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 425; Mature: 424
Protein sequence:
>425_residues MTRRACIALAVLTCCATSVCRADDAEAAGLALADATPVQTVDERNYRFSIEPGLRLAEVRPGGGLRTAGRLSLDLFARHA LAGGWSVNFADRLDLNGPLRFDGDAAAINTLKELYLDGRLGGGKTLLQAGRVNVRLGVATGYNPTDFLRDNAVRSVTSVD PASLRENRLGTVMLRGQQLWSGGSASALVAPRVADRPSDASYSPDFGATNQRTRWLLQFSQRMVLDLTPQFMVYHDGKPG SSPQFGLTLDHLVNNACVTYAEWSGGRGPSTLARALGRPYGDVAFRWKLAAGLTCTTSRNLSVTLEYDRDGAALDRAGWR ALRSGPPAAYAAYRALAAAQQDPVTRDAVFMMARWQDAWIQRLDLSGFVRMNLADRSRLTWLEARYRFARTDVALQWQID AGASSTEFGALPQSNLWQLLVKHYL
Sequences:
>Translated_425_residues MTRRACIALAVLTCCATSVCRADDAEAAGLALADATPVQTVDERNYRFSIEPGLRLAEVRPGGGLRTAGRLSLDLFARHA LAGGWSVNFADRLDLNGPLRFDGDAAAINTLKELYLDGRLGGGKTLLQAGRVNVRLGVATGYNPTDFLRDNAVRSVTSVD PASLRENRLGTVMLRGQQLWSGGSASALVAPRVADRPSDASYSPDFGATNQRTRWLLQFSQRMVLDLTPQFMVYHDGKPG SSPQFGLTLDHLVNNACVTYAEWSGGRGPSTLARALGRPYGDVAFRWKLAAGLTCTTSRNLSVTLEYDRDGAALDRAGWR ALRSGPPAAYAAYRALAAAQQDPVTRDAVFMMARWQDAWIQRLDLSGFVRMNLADRSRLTWLEARYRFARTDVALQWQID AGASSTEFGALPQSNLWQLLVKHYL >Mature_424_residues TRRACIALAVLTCCATSVCRADDAEAAGLALADATPVQTVDERNYRFSIEPGLRLAEVRPGGGLRTAGRLSLDLFARHAL AGGWSVNFADRLDLNGPLRFDGDAAAINTLKELYLDGRLGGGKTLLQAGRVNVRLGVATGYNPTDFLRDNAVRSVTSVDP ASLRENRLGTVMLRGQQLWSGGSASALVAPRVADRPSDASYSPDFGATNQRTRWLLQFSQRMVLDLTPQFMVYHDGKPGS SPQFGLTLDHLVNNACVTYAEWSGGRGPSTLARALGRPYGDVAFRWKLAAGLTCTTSRNLSVTLEYDRDGAALDRAGWRA LRSGPPAAYAAYRALAAAQQDPVTRDAVFMMARWQDAWIQRLDLSGFVRMNLADRSRLTWLEARYRFARTDVALQWQIDA GASSTEFGALPQSNLWQLLVKHYL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46403; Mature: 46272
Theoretical pI: Translated: 9.50; Mature: 9.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRRACIALAVLTCCATSVCRADDAEAAGLALADATPVQTVDERNYRFSIEPGLRLAEVR CCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCCEEEEEC PGGGLRTAGRLSLDLFARHALAGGWSVNFADRLDLNGPLRFDGDAAAINTLKELYLDGRL CCCCCCCCCCHHHHHHHHHHHCCCCEECCHHCCCCCCCEEECCCHHHHHHHHHHHHCCCC GGGKTLLQAGRVNVRLGVATGYNPTDFLRDNAVRSVTSVDPASLRENRLGTVMLRGQQLW CCCHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEECHHHC SGGSASALVAPRVADRPSDASYSPDFGATNQRTRWLLQFSQRMVLDLTPQFMVYHDGKPG CCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEECCCCEEEEECCCCC SSPQFGLTLDHLVNNACVTYAEWSGGRGPSTLARALGRPYGDVAFRWKLAAGLTCTTSRN CCCCCCEEHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCCCEEEEEEEECCEEEECCCC LSVTLEYDRDGAALDRAGWRALRSGPPAAYAAYRALAAAQQDPVTRDAVFMMARWQDAWI EEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH QRLDLSGFVRMNLADRSRLTWLEARYRFARTDVALQWQIDAGASSTEFGALPQSNLWQLL HHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHH VKHYL HHHCC >Mature Secondary Structure TRRACIALAVLTCCATSVCRADDAEAAGLALADATPVQTVDERNYRFSIEPGLRLAEVR CHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCCEEEEEC PGGGLRTAGRLSLDLFARHALAGGWSVNFADRLDLNGPLRFDGDAAAINTLKELYLDGRL CCCCCCCCCCHHHHHHHHHHHCCCCEECCHHCCCCCCCEEECCCHHHHHHHHHHHHCCCC GGGKTLLQAGRVNVRLGVATGYNPTDFLRDNAVRSVTSVDPASLRENRLGTVMLRGQQLW CCCHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEECHHHC SGGSASALVAPRVADRPSDASYSPDFGATNQRTRWLLQFSQRMVLDLTPQFMVYHDGKPG CCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEECCCCEEEEECCCCC SSPQFGLTLDHLVNNACVTYAEWSGGRGPSTLARALGRPYGDVAFRWKLAAGLTCTTSRN CCCCCCEEHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCCCEEEEEEEECCEEEECCCC LSVTLEYDRDGAALDRAGWRALRSGPPAAYAAYRALAAAQQDPVTRDAVFMMARWQDAWI EEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH QRLDLSGFVRMNLADRSRLTWLEARYRFARTDVALQWQIDAGASSTEFGALPQSNLWQLL HHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHH VKHYL HHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA