Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 238027797

GI number: 238027797

Start: 2422870

End: 2424090

Strand: Direct

Name: yfdE [H]

Synonym: bglu_1g22230

Alternate gene names: 238027797

Gene position: 2422870-2424090 (Clockwise)

Preceding gene: 238027794

Following gene: 238027799

Centisome position: 62.02

GC content: 70.93

Gene sequence:

>1221_bases
ATGGGTGCTTTGAGTCATATTCGCGTCCTGGACCTGAGCCGCGTGCTGGCCGGGCCGTGGTGCGCGCAGACGCTCGCCGA
TTTCGGCGCCGACGTGATCAAGATCGAGCGCCCCGGCGCCGGTGGGGACACCCGCCACTGGGGCCCGCCCTACCATCGCG
CGGCCGACGGCAGCGACACGCGCGAGGCCGCCTATTATCTGGCCGCGAACCGCAACAAGCGCTCGGTGACGATCGACATC
GCCACGCCGGACGGCCAGCGCCTGGTGCGCGAGCTGGCCGCGCAAAGCGACGTGGTGATCGAGAACTACAAGGCCGGCCA
GCTGCAGAAGTACGGCCTCGACTACGCATCGCTGCGCGCGATCAAGCCGGCGCTCGTCTACTGCTCGGTGACGGGCTTCG
GCCAGACCGGCCCCTACGCGCACCGCGCCGGCTACGACTTCATCATCCAGGGCCTGGGCGGCTTCATGAGCATCACCGGC
GAGCGCGACACCGAGCCCGGCGGCGGCCCGCAGAAGGCCGGCGTCGCGATCGCCGACCTCGCCACCGGCCTGTATGCGTG
CACGGCGATCCTCGCCGCGCTGGCGCACCGCGACCGCACCGGCGAAGGCCAGTACATCGACATGGCGCTGCTCGACGTGC
AGGTGGCGCTGCTCGCCAACATGACCACCAACTACCTCGCGAGCGGCCAGCCGCCCGTGCGCTGGGGCAACGCGCACCCG
AACATCGTGCCCTACCAGACGTTCGAGGCCAGCGACGGCTGGATCATCGTCGCGGTCGGCAACGACGGCCAGTTCCGCAA
GTTCGTCGAAGCCGGCGGCCGCCCCGAGCTCGCCGACGACACGCGCTTCGCGACCAATCCCGCACGCGTGCGCCATCGGC
CGCTGCTGGTGCCGATCCTGGCTGAAATGACGCGCGGGCGCACGCGTGGGGAATGGATTGCCGCGCTGGAAGCGGCCGGG
GTGCCGTGCGGGCCGATCAACGACCTGGCCGAAGTGTTCGAGAACGAGCAGGTGATCGCGCGCGGCCTGCAAGTGGCGCT
GCCGCATCCGAGCGGCGCGCCCGTGAAGCTGGTGCGCAATCCGGTGCAGATGAGCGCCACGCCGCCCGAGGCGCGCAGCG
CGCCGCCGCTGCTAGGCGAGCATACCGACGCGGTGCTCGCCGAGCTGCTCGGCTATGATGCGCAGGCGATCGCCGCGCTG
CGCGGGAAGGGCGTGGTATAG

Upstream 100 bases:

>100_bases
TGCGCGCCGCCGCTGGCCGATTCGCTTTAAGATGCACGACGGCCGCCGCCCGCGCATCGCCGCGCGGGCGCCGCCCGACG
CCGAGGGAGAACGACGACAG

Downstream 100 bases:

>100_bases
GAGAGCGGGCGCCGGCGAAGGCGCCGGCGGCGGCCTCGTCGTGCCGCGGGCACTGCCGGTCGGGCCGCGCCGAGTGCATG
CCGGCGGCGGCCGTCGCAGG

Product: putative acyl-CoA transferases/carnitine dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 405

Protein sequence:

>406_residues
MGALSHIRVLDLSRVLAGPWCAQTLADFGADVIKIERPGAGGDTRHWGPPYHRAADGSDTREAAYYLAANRNKRSVTIDI
ATPDGQRLVRELAAQSDVVIENYKAGQLQKYGLDYASLRAIKPALVYCSVTGFGQTGPYAHRAGYDFIIQGLGGFMSITG
ERDTEPGGGPQKAGVAIADLATGLYACTAILAALAHRDRTGEGQYIDMALLDVQVALLANMTTNYLASGQPPVRWGNAHP
NIVPYQTFEASDGWIIVAVGNDGQFRKFVEAGGRPELADDTRFATNPARVRHRPLLVPILAEMTRGRTRGEWIAALEAAG
VPCGPINDLAEVFENEQVIARGLQVALPHPSGAPVKLVRNPVQMSATPPEARSAPPLLGEHTDAVLAELLGYDAQAIAAL
RGKGVV

Sequences:

>Translated_406_residues
MGALSHIRVLDLSRVLAGPWCAQTLADFGADVIKIERPGAGGDTRHWGPPYHRAADGSDTREAAYYLAANRNKRSVTIDI
ATPDGQRLVRELAAQSDVVIENYKAGQLQKYGLDYASLRAIKPALVYCSVTGFGQTGPYAHRAGYDFIIQGLGGFMSITG
ERDTEPGGGPQKAGVAIADLATGLYACTAILAALAHRDRTGEGQYIDMALLDVQVALLANMTTNYLASGQPPVRWGNAHP
NIVPYQTFEASDGWIIVAVGNDGQFRKFVEAGGRPELADDTRFATNPARVRHRPLLVPILAEMTRGRTRGEWIAALEAAG
VPCGPINDLAEVFENEQVIARGLQVALPHPSGAPVKLVRNPVQMSATPPEARSAPPLLGEHTDAVLAELLGYDAQAIAAL
RGKGVV
>Mature_405_residues
GALSHIRVLDLSRVLAGPWCAQTLADFGADVIKIERPGAGGDTRHWGPPYHRAADGSDTREAAYYLAANRNKRSVTIDIA
TPDGQRLVRELAAQSDVVIENYKAGQLQKYGLDYASLRAIKPALVYCSVTGFGQTGPYAHRAGYDFIIQGLGGFMSITGE
RDTEPGGGPQKAGVAIADLATGLYACTAILAALAHRDRTGEGQYIDMALLDVQVALLANMTTNYLASGQPPVRWGNAHPN
IVPYQTFEASDGWIIVAVGNDGQFRKFVEAGGRPELADDTRFATNPARVRHRPLLVPILAEMTRGRTRGEWIAALEAAGV
PCGPINDLAEVFENEQVIARGLQVALPHPSGAPVKLVRNPVQMSATPPEARSAPPLLGEHTDAVLAELLGYDAQAIAALR
GKGVV

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=403, Percent_Identity=44.1687344913151, Blast_Score=357, Evalue=2e-98,
Organism=Homo sapiens, GI300863124, Length=429, Percent_Identity=41.4918414918415, Blast_Score=342, Evalue=3e-94,
Organism=Homo sapiens, GI13376042, Length=429, Percent_Identity=37.7622377622378, Blast_Score=293, Evalue=3e-79,
Organism=Homo sapiens, GI300863126, Length=403, Percent_Identity=37.9652605459057, Blast_Score=291, Evalue=6e-79,
Organism=Homo sapiens, GI266456254, Length=411, Percent_Identity=28.2238442822384, Blast_Score=139, Evalue=4e-33,
Organism=Homo sapiens, GI42794625, Length=411, Percent_Identity=28.2238442822384, Blast_Score=139, Evalue=6e-33,
Organism=Homo sapiens, GI266458397, Length=273, Percent_Identity=31.5018315018315, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI266458393, Length=273, Percent_Identity=31.5018315018315, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI266458395, Length=162, Percent_Identity=32.0987654320988, Blast_Score=93, Evalue=4e-19,
Organism=Homo sapiens, GI42822893, Length=162, Percent_Identity=32.0987654320988, Blast_Score=92, Evalue=8e-19,
Organism=Escherichia coli, GI87082093, Length=389, Percent_Identity=31.6195372750643, Blast_Score=224, Evalue=9e-60,
Organism=Escherichia coli, GI1788717, Length=423, Percent_Identity=31.6784869976359, Blast_Score=184, Evalue=1e-47,
Organism=Escherichia coli, GI1786222, Length=414, Percent_Identity=25.3623188405797, Blast_Score=86, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI115535051, Length=334, Percent_Identity=26.9461077844311, Blast_Score=96, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI32564160, Length=354, Percent_Identity=25.9887005649718, Blast_Score=95, Evalue=7e-20,
Organism=Drosophila melanogaster, GI24648431, Length=403, Percent_Identity=47.8908188585608, Blast_Score=367, Evalue=1e-102,
Organism=Drosophila melanogaster, GI24585488, Length=370, Percent_Identity=30, Blast_Score=125, Evalue=7e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43286; Mature: 43154

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGALSHIRVLDLSRVLAGPWCAQTLADFGADVIKIERPGAGGDTRHWGPPYHRAADGSDT
CCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
REAAYYLAANRNKRSVTIDIATPDGQRLVRELAAQSDVVIENYKAGQLQKYGLDYASLRA
HHHEEEEEECCCCEEEEEEEECCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHHHHH
IKPALVYCSVTGFGQTGPYAHRAGYDFIIQGLGGFMSITGERDTEPGGGPQKAGVAIADL
HCCEEEEEEECCCCCCCCCHHHCCHHHHHHHCCCEEEECCCCCCCCCCCCHHHCCHHHHH
ATGLYACTAILAALAHRDRTGEGQYIDMALLDVQVALLANMTTNYLASGQPPVRWGNAHP
HHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCC
NIVPYQTFEASDGWIIVAVGNDGQFRKFVEAGGRPELADDTRFATNPARVRHRPLLVPIL
CCCCEEEEECCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCHHHHH
AEMTRGRTRGEWIAALEAAGVPCGPINDLAEVFENEQVIARGLQVALPHPSGAPVKLVRN
HHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHCCCEEEECCCCCCCHHHHCC
PVQMSATPPEARSAPPLLGEHTDAVLAELLGYDAQAIAALRGKGVV
CHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCC
>Mature Secondary Structure 
GALSHIRVLDLSRVLAGPWCAQTLADFGADVIKIERPGAGGDTRHWGPPYHRAADGSDT
CCCHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
REAAYYLAANRNKRSVTIDIATPDGQRLVRELAAQSDVVIENYKAGQLQKYGLDYASLRA
HHHEEEEEECCCCEEEEEEEECCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHHHHH
IKPALVYCSVTGFGQTGPYAHRAGYDFIIQGLGGFMSITGERDTEPGGGPQKAGVAIADL
HCCEEEEEEECCCCCCCCCHHHCCHHHHHHHCCCEEEECCCCCCCCCCCCHHHCCHHHHH
ATGLYACTAILAALAHRDRTGEGQYIDMALLDVQVALLANMTTNYLASGQPPVRWGNAHP
HHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCC
NIVPYQTFEASDGWIIVAVGNDGQFRKFVEAGGRPELADDTRFATNPARVRHRPLLVPIL
CCCCEEEEECCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCHHHHH
AEMTRGRTRGEWIAALEAAGVPCGPINDLAEVFENEQVIARGLQVALPHPSGAPVKLVRN
HHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHCCCEEEECCCCCCCHHHHCC
PVQMSATPPEARSAPPLLGEHTDAVLAELLGYDAQAIAALRGKGVV
CHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]