Definition Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence.
Accession NC_012724
Length 3,906,507

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The map label for this gene is kstD [H]

Identifier: 238027382

GI number: 238027382

Start: 1950940

End: 1952685

Strand: Reverse

Name: kstD [H]

Synonym: bglu_1g17780

Alternate gene names: 238027382

Gene position: 1952685-1950940 (Counterclockwise)

Preceding gene: 238027383

Following gene: 238027381

Centisome position: 49.99

GC content: 61.34

Gene sequence:

>1746_bases
ATGAAAAAGGACCCGATTGTAGAATGTGACGTGCTGGTCGTTGGCTCTGGAGCGGGAGGTCTGTCCGCAGCCGTGACGGC
GGCGATTTTGGGCCTGCGTGTCATGGTTGTGGAAAAAGAAGACGTTTTCGGCGGCACCACGGCGTGGTCCGGCGGGTGGC
TGTGGATTCCACGCAATCATCTGGCTGTTCGTGCCGGTATTGAAGAAGACATCGAGGTGCCCCGTACCTACCTGCGCAGC
GAACTGGGCGGCCAGTTCGACGAGGCCAGAGTCAATGCGTTCCTTGAACACGGCCCTGCGATGCTGGATTTTTTCGAGAG
CCATTCCTCGGTGCGTTTTGTCGATGGCAACGCCATTCCGGATTTTCACGTGACGCCTGGCGCGAAGACCGGCGGGCGCT
CCGTCTGCGCGATGCCGTTCGACGGACGGCAGCTCGGCCCATTGATCGACAAGCTGCGCCAGCCCTTGTCGGTTATCACC
CTCGGCGGGATGGGGCTGATGGCCGGACGCGATATCACGCATTTCTACCGGGCGACGCGGTCGGTGCGCTCGGCGCTGTA
CGTGACGCGCCGTCTCGCTCAGCTTGCATGGCACAAGCTGCGGTATGGGCGTTCGATGCACCTGGTAAACGGCAACGCGC
TGATTGCCCGCCTGTTGAAGTCCGCCATCGATGCCGGTGTCGATTTGAATGCGGGTGCAACCGTAATTGATCTCATAACG
GAAAAGCAGCGGGTGGCGGGCGCACATCTGAAGATCGACGGCGCAGTGCGCGAGGTACGGGCTTTGCGCGGTGTGGTCCT
GGCATGTGGTGGGTATCCGCACGATATCGAACGGCGGAAAAGCACTTTTTTCTATACGCCGAGCGGGCTTGACCATTGGT
CTGCCGCGCCGCGAACCAATACCGGAGACGGCATTCGCCTCGGTGAATCTGTCGGTGGCCGCTTTGACGACACGCTGCAC
GCACCGGCGGCATGGGTGCCGGTCTCGCTGGTTCCGCAACAAAATGGCGCCGAGGATGTGGTGTTCCCACATCTGATAGA
CCGAGCAAAGCCGGGGGTGATAGCCGTCAGCAAGGCCGGCGAACGTTTCGTCAATGAAGCCTCGCCGTATTACGATTTTA
TTTCGGCGCTGCTCGAGATAACGCCGGCGGGCGAGGACGTCCATGCGTGGCTCATCTGCGATCACCGCTTCCAGCGGCGT
TACGGCCTGGGCTTCTCAAAGCCATTTCCCTTTCCGATTCAACCGCATCTGGACTCCGGCTACCTGCTGCAGGCGGCGAC
CCTCGATGAACTTGCGGTGCGATGCGGTATTGAACCGCGGGCGCTCGTCAGGACGATACAGACCTACAACGCCCACGCGA
GGGACGGCGCCGATCCGCAGTTTCATCGAGGATCGACGCCCTTCAATCGCGCCCAGGGCGACTCGCTACACGCGCCCAAT
CCTTGTGTCGCGCCTATCGAAAGGGCGCCTTTCTATGCCGTGAAATTGCTGCCTGGCAGCCTCGGCACCTTCCAGGGACT
GCAGACCGATGCGCAATCCCGGGTCTTGGACGGCAATCATCGCGTCATTCCCGGCTTATATGCGGCCGGCAACGATAGTG
CAAGCGTGATGGGCGGATTTTATCCGAGCGGCGGCATCACGCTTGGCCCGGCGATGACGTTTGGCTACCTCGCGGGCCGC
TCGCTAGCGGGGGAACGGGAGCGCGCGAGCCGTATTGCAGAAAATGAAATTGAAGTGGCGCGGTGA

Upstream 100 bases:

>100_bases
AGAAAATTGGATACTCGGAATATATCCGGCGGTCAGTAGAAACCACTCAGCGGCATTTGGATGAAATATCGGTTGAGTAA
TCACGTGAAGCTGAGGAAAT

Downstream 100 bases:

>100_bases
AATCGCTTGCATGGCGCAGATCCTTGCCGCTCGCGTGGCATTGCAGATCGGCCCAGCAAGCCCGAGGAGCCGGCGAGACC
AGATGAGCGGCCCGGCATGT

Product: Fumarate reductase/succinate dehydrogenase flavoprotein-like protein

Products: NA

Alternate protein names: 3-keto-Delta(4)-steroid Delta(1)-dehydrogenase; KSDD; 3-oxo-Delta(4)-steroid 1-dehydrogenase; KSTD [H]

Number of amino acids: Translated: 581; Mature: 581

Protein sequence:

>581_residues
MKKDPIVECDVLVVGSGAGGLSAAVTAAILGLRVMVVEKEDVFGGTTAWSGGWLWIPRNHLAVRAGIEEDIEVPRTYLRS
ELGGQFDEARVNAFLEHGPAMLDFFESHSSVRFVDGNAIPDFHVTPGAKTGGRSVCAMPFDGRQLGPLIDKLRQPLSVIT
LGGMGLMAGRDITHFYRATRSVRSALYVTRRLAQLAWHKLRYGRSMHLVNGNALIARLLKSAIDAGVDLNAGATVIDLIT
EKQRVAGAHLKIDGAVREVRALRGVVLACGGYPHDIERRKSTFFYTPSGLDHWSAAPRTNTGDGIRLGESVGGRFDDTLH
APAAWVPVSLVPQQNGAEDVVFPHLIDRAKPGVIAVSKAGERFVNEASPYYDFISALLEITPAGEDVHAWLICDHRFQRR
YGLGFSKPFPFPIQPHLDSGYLLQAATLDELAVRCGIEPRALVRTIQTYNAHARDGADPQFHRGSTPFNRAQGDSLHAPN
PCVAPIERAPFYAVKLLPGSLGTFQGLQTDAQSRVLDGNHRVIPGLYAAGNDSASVMGGFYPSGGITLGPAMTFGYLAGR
SLAGERERASRIAENEIEVAR

Sequences:

>Translated_581_residues
MKKDPIVECDVLVVGSGAGGLSAAVTAAILGLRVMVVEKEDVFGGTTAWSGGWLWIPRNHLAVRAGIEEDIEVPRTYLRS
ELGGQFDEARVNAFLEHGPAMLDFFESHSSVRFVDGNAIPDFHVTPGAKTGGRSVCAMPFDGRQLGPLIDKLRQPLSVIT
LGGMGLMAGRDITHFYRATRSVRSALYVTRRLAQLAWHKLRYGRSMHLVNGNALIARLLKSAIDAGVDLNAGATVIDLIT
EKQRVAGAHLKIDGAVREVRALRGVVLACGGYPHDIERRKSTFFYTPSGLDHWSAAPRTNTGDGIRLGESVGGRFDDTLH
APAAWVPVSLVPQQNGAEDVVFPHLIDRAKPGVIAVSKAGERFVNEASPYYDFISALLEITPAGEDVHAWLICDHRFQRR
YGLGFSKPFPFPIQPHLDSGYLLQAATLDELAVRCGIEPRALVRTIQTYNAHARDGADPQFHRGSTPFNRAQGDSLHAPN
PCVAPIERAPFYAVKLLPGSLGTFQGLQTDAQSRVLDGNHRVIPGLYAAGNDSASVMGGFYPSGGITLGPAMTFGYLAGR
SLAGERERASRIAENEIEVAR
>Mature_581_residues
MKKDPIVECDVLVVGSGAGGLSAAVTAAILGLRVMVVEKEDVFGGTTAWSGGWLWIPRNHLAVRAGIEEDIEVPRTYLRS
ELGGQFDEARVNAFLEHGPAMLDFFESHSSVRFVDGNAIPDFHVTPGAKTGGRSVCAMPFDGRQLGPLIDKLRQPLSVIT
LGGMGLMAGRDITHFYRATRSVRSALYVTRRLAQLAWHKLRYGRSMHLVNGNALIARLLKSAIDAGVDLNAGATVIDLIT
EKQRVAGAHLKIDGAVREVRALRGVVLACGGYPHDIERRKSTFFYTPSGLDHWSAAPRTNTGDGIRLGESVGGRFDDTLH
APAAWVPVSLVPQQNGAEDVVFPHLIDRAKPGVIAVSKAGERFVNEASPYYDFISALLEITPAGEDVHAWLICDHRFQRR
YGLGFSKPFPFPIQPHLDSGYLLQAATLDELAVRCGIEPRALVRTIQTYNAHARDGADPQFHRGSTPFNRAQGDSLHAPN
PCVAPIERAPFYAVKLLPGSLGTFQGLQTDAQSRVLDGNHRVIPGLYAAGNDSASVMGGFYPSGGITLGPAMTFGYLAGR
SLAGERERASRIAENEIEVAR

Specific function: Catalyzes the elimination of the C-1 and C-2 hydrogen atoms of the A-ring from the polycyclic ring structure of 3- ketosteroids. Is also involved in the formation of 3-keto-1,4- diene-steroid from 3-keto-4-ene-steroid [H]

COG id: COG1053

COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FAD-dependent oxidoreductase 2 family. 3-oxosteroid dehydrogenase subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: =1.3.99.4 [H]

Molecular weight: Translated: 62820; Mature: 62820

Theoretical pI: Translated: 7.96; Mature: 7.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKDPIVECDVLVVGSGAGGLSAAVTAAILGLRVMVVEKEDVFGGTTAWSGGWLWIPRNH
CCCCCCEEEEEEEEECCCCCHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCEEEEECCC
LAVRAGIEEDIEVPRTYLRSELGGQFDEARVNAFLEHGPAMLDFFESHSSVRFVDGNAIP
EEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHCCCCEEEECCCCCC
DFHVTPGAKTGGRSVCAMPFDGRQLGPLIDKLRQPLSVITLGGMGLMAGRDITHFYRATR
CCEECCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHH
SVRSALYVTRRLAQLAWHKLRYGRSMHLVNGNALIARLLKSAIDAGVDLNAGATVIDLIT
HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
EKQRVAGAHLKIDGAVREVRALRGVVLACGGYPHDIERRKSTFFYTPSGLDHWSAAPRTN
HHHHHCCCEEEEHHHHHHHHHHHCEEEECCCCCHHHHHCCCEEEECCCCCCCCCCCCCCC
TGDGIRLGESVGGRFDDTLHAPAAWVPVSLVPQQNGAEDVVFPHLIDRAKPGVIAVSKAG
CCCCEEECHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEEECHH
ERFVNEASPYYDFISALLEITPAGEDVHAWLICDHRFQRRYGLGFSKPFPFPIQPHLDSG
HHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHCCCCCCCCCCCCCCCCCCC
YLLQAATLDELAVRCGIEPRALVRTIQTYNAHARDGADPQFHRGSTPFNRAQGDSLHAPN
CEEEECCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PCVAPIERAPFYAVKLLPGSLGTFQGLQTDAQSRVLDGNHRVIPGLYAAGNDSASVMGGF
CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHEECCCCEECCCEEECCCCCCCEECCC
YPSGGITLGPAMTFGYLAGRSLAGERERASRIAENEIEVAR
CCCCCEEECHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKKDPIVECDVLVVGSGAGGLSAAVTAAILGLRVMVVEKEDVFGGTTAWSGGWLWIPRNH
CCCCCCEEEEEEEEECCCCCHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCEEEEECCC
LAVRAGIEEDIEVPRTYLRSELGGQFDEARVNAFLEHGPAMLDFFESHSSVRFVDGNAIP
EEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHCCCCEEEECCCCCC
DFHVTPGAKTGGRSVCAMPFDGRQLGPLIDKLRQPLSVITLGGMGLMAGRDITHFYRATR
CCEECCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHH
SVRSALYVTRRLAQLAWHKLRYGRSMHLVNGNALIARLLKSAIDAGVDLNAGATVIDLIT
HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
EKQRVAGAHLKIDGAVREVRALRGVVLACGGYPHDIERRKSTFFYTPSGLDHWSAAPRTN
HHHHHCCCEEEEHHHHHHHHHHHCEEEECCCCCHHHHHCCCEEEECCCCCCCCCCCCCCC
TGDGIRLGESVGGRFDDTLHAPAAWVPVSLVPQQNGAEDVVFPHLIDRAKPGVIAVSKAG
CCCCEEECHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEEECHH
ERFVNEASPYYDFISALLEITPAGEDVHAWLICDHRFQRRYGLGFSKPFPFPIQPHLDSG
HHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHCCCCCCCCCCCCCCCCCCC
YLLQAATLDELAVRCGIEPRALVRTIQTYNAHARDGADPQFHRGSTPFNRAQGDSLHAPN
CEEEECCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PCVAPIERAPFYAVKLLPGSLGTFQGLQTDAQSRVLDGNHRVIPGLYAAGNDSASVMGGF
CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHEECCCCEECCCEEECCCCCCCEECCC
YPSGGITLGPAMTFGYLAGRSLAGERERASRIAENEIEVAR
CCCCCEEECHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12218036 [H]