| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
Click here to switch to the map view.
The map label for this gene is kstD [H]
Identifier: 238027382
GI number: 238027382
Start: 1950940
End: 1952685
Strand: Reverse
Name: kstD [H]
Synonym: bglu_1g17780
Alternate gene names: 238027382
Gene position: 1952685-1950940 (Counterclockwise)
Preceding gene: 238027383
Following gene: 238027381
Centisome position: 49.99
GC content: 61.34
Gene sequence:
>1746_bases ATGAAAAAGGACCCGATTGTAGAATGTGACGTGCTGGTCGTTGGCTCTGGAGCGGGAGGTCTGTCCGCAGCCGTGACGGC GGCGATTTTGGGCCTGCGTGTCATGGTTGTGGAAAAAGAAGACGTTTTCGGCGGCACCACGGCGTGGTCCGGCGGGTGGC TGTGGATTCCACGCAATCATCTGGCTGTTCGTGCCGGTATTGAAGAAGACATCGAGGTGCCCCGTACCTACCTGCGCAGC GAACTGGGCGGCCAGTTCGACGAGGCCAGAGTCAATGCGTTCCTTGAACACGGCCCTGCGATGCTGGATTTTTTCGAGAG CCATTCCTCGGTGCGTTTTGTCGATGGCAACGCCATTCCGGATTTTCACGTGACGCCTGGCGCGAAGACCGGCGGGCGCT CCGTCTGCGCGATGCCGTTCGACGGACGGCAGCTCGGCCCATTGATCGACAAGCTGCGCCAGCCCTTGTCGGTTATCACC CTCGGCGGGATGGGGCTGATGGCCGGACGCGATATCACGCATTTCTACCGGGCGACGCGGTCGGTGCGCTCGGCGCTGTA CGTGACGCGCCGTCTCGCTCAGCTTGCATGGCACAAGCTGCGGTATGGGCGTTCGATGCACCTGGTAAACGGCAACGCGC TGATTGCCCGCCTGTTGAAGTCCGCCATCGATGCCGGTGTCGATTTGAATGCGGGTGCAACCGTAATTGATCTCATAACG GAAAAGCAGCGGGTGGCGGGCGCACATCTGAAGATCGACGGCGCAGTGCGCGAGGTACGGGCTTTGCGCGGTGTGGTCCT GGCATGTGGTGGGTATCCGCACGATATCGAACGGCGGAAAAGCACTTTTTTCTATACGCCGAGCGGGCTTGACCATTGGT CTGCCGCGCCGCGAACCAATACCGGAGACGGCATTCGCCTCGGTGAATCTGTCGGTGGCCGCTTTGACGACACGCTGCAC GCACCGGCGGCATGGGTGCCGGTCTCGCTGGTTCCGCAACAAAATGGCGCCGAGGATGTGGTGTTCCCACATCTGATAGA CCGAGCAAAGCCGGGGGTGATAGCCGTCAGCAAGGCCGGCGAACGTTTCGTCAATGAAGCCTCGCCGTATTACGATTTTA TTTCGGCGCTGCTCGAGATAACGCCGGCGGGCGAGGACGTCCATGCGTGGCTCATCTGCGATCACCGCTTCCAGCGGCGT TACGGCCTGGGCTTCTCAAAGCCATTTCCCTTTCCGATTCAACCGCATCTGGACTCCGGCTACCTGCTGCAGGCGGCGAC CCTCGATGAACTTGCGGTGCGATGCGGTATTGAACCGCGGGCGCTCGTCAGGACGATACAGACCTACAACGCCCACGCGA GGGACGGCGCCGATCCGCAGTTTCATCGAGGATCGACGCCCTTCAATCGCGCCCAGGGCGACTCGCTACACGCGCCCAAT CCTTGTGTCGCGCCTATCGAAAGGGCGCCTTTCTATGCCGTGAAATTGCTGCCTGGCAGCCTCGGCACCTTCCAGGGACT GCAGACCGATGCGCAATCCCGGGTCTTGGACGGCAATCATCGCGTCATTCCCGGCTTATATGCGGCCGGCAACGATAGTG CAAGCGTGATGGGCGGATTTTATCCGAGCGGCGGCATCACGCTTGGCCCGGCGATGACGTTTGGCTACCTCGCGGGCCGC TCGCTAGCGGGGGAACGGGAGCGCGCGAGCCGTATTGCAGAAAATGAAATTGAAGTGGCGCGGTGA
Upstream 100 bases:
>100_bases AGAAAATTGGATACTCGGAATATATCCGGCGGTCAGTAGAAACCACTCAGCGGCATTTGGATGAAATATCGGTTGAGTAA TCACGTGAAGCTGAGGAAAT
Downstream 100 bases:
>100_bases AATCGCTTGCATGGCGCAGATCCTTGCCGCTCGCGTGGCATTGCAGATCGGCCCAGCAAGCCCGAGGAGCCGGCGAGACC AGATGAGCGGCCCGGCATGT
Product: Fumarate reductase/succinate dehydrogenase flavoprotein-like protein
Products: NA
Alternate protein names: 3-keto-Delta(4)-steroid Delta(1)-dehydrogenase; KSDD; 3-oxo-Delta(4)-steroid 1-dehydrogenase; KSTD [H]
Number of amino acids: Translated: 581; Mature: 581
Protein sequence:
>581_residues MKKDPIVECDVLVVGSGAGGLSAAVTAAILGLRVMVVEKEDVFGGTTAWSGGWLWIPRNHLAVRAGIEEDIEVPRTYLRS ELGGQFDEARVNAFLEHGPAMLDFFESHSSVRFVDGNAIPDFHVTPGAKTGGRSVCAMPFDGRQLGPLIDKLRQPLSVIT LGGMGLMAGRDITHFYRATRSVRSALYVTRRLAQLAWHKLRYGRSMHLVNGNALIARLLKSAIDAGVDLNAGATVIDLIT EKQRVAGAHLKIDGAVREVRALRGVVLACGGYPHDIERRKSTFFYTPSGLDHWSAAPRTNTGDGIRLGESVGGRFDDTLH APAAWVPVSLVPQQNGAEDVVFPHLIDRAKPGVIAVSKAGERFVNEASPYYDFISALLEITPAGEDVHAWLICDHRFQRR YGLGFSKPFPFPIQPHLDSGYLLQAATLDELAVRCGIEPRALVRTIQTYNAHARDGADPQFHRGSTPFNRAQGDSLHAPN PCVAPIERAPFYAVKLLPGSLGTFQGLQTDAQSRVLDGNHRVIPGLYAAGNDSASVMGGFYPSGGITLGPAMTFGYLAGR SLAGERERASRIAENEIEVAR
Sequences:
>Translated_581_residues MKKDPIVECDVLVVGSGAGGLSAAVTAAILGLRVMVVEKEDVFGGTTAWSGGWLWIPRNHLAVRAGIEEDIEVPRTYLRS ELGGQFDEARVNAFLEHGPAMLDFFESHSSVRFVDGNAIPDFHVTPGAKTGGRSVCAMPFDGRQLGPLIDKLRQPLSVIT LGGMGLMAGRDITHFYRATRSVRSALYVTRRLAQLAWHKLRYGRSMHLVNGNALIARLLKSAIDAGVDLNAGATVIDLIT EKQRVAGAHLKIDGAVREVRALRGVVLACGGYPHDIERRKSTFFYTPSGLDHWSAAPRTNTGDGIRLGESVGGRFDDTLH APAAWVPVSLVPQQNGAEDVVFPHLIDRAKPGVIAVSKAGERFVNEASPYYDFISALLEITPAGEDVHAWLICDHRFQRR YGLGFSKPFPFPIQPHLDSGYLLQAATLDELAVRCGIEPRALVRTIQTYNAHARDGADPQFHRGSTPFNRAQGDSLHAPN PCVAPIERAPFYAVKLLPGSLGTFQGLQTDAQSRVLDGNHRVIPGLYAAGNDSASVMGGFYPSGGITLGPAMTFGYLAGR SLAGERERASRIAENEIEVAR >Mature_581_residues MKKDPIVECDVLVVGSGAGGLSAAVTAAILGLRVMVVEKEDVFGGTTAWSGGWLWIPRNHLAVRAGIEEDIEVPRTYLRS ELGGQFDEARVNAFLEHGPAMLDFFESHSSVRFVDGNAIPDFHVTPGAKTGGRSVCAMPFDGRQLGPLIDKLRQPLSVIT LGGMGLMAGRDITHFYRATRSVRSALYVTRRLAQLAWHKLRYGRSMHLVNGNALIARLLKSAIDAGVDLNAGATVIDLIT EKQRVAGAHLKIDGAVREVRALRGVVLACGGYPHDIERRKSTFFYTPSGLDHWSAAPRTNTGDGIRLGESVGGRFDDTLH APAAWVPVSLVPQQNGAEDVVFPHLIDRAKPGVIAVSKAGERFVNEASPYYDFISALLEITPAGEDVHAWLICDHRFQRR YGLGFSKPFPFPIQPHLDSGYLLQAATLDELAVRCGIEPRALVRTIQTYNAHARDGADPQFHRGSTPFNRAQGDSLHAPN PCVAPIERAPFYAVKLLPGSLGTFQGLQTDAQSRVLDGNHRVIPGLYAAGNDSASVMGGFYPSGGITLGPAMTFGYLAGR SLAGERERASRIAENEIEVAR
Specific function: Catalyzes the elimination of the C-1 and C-2 hydrogen atoms of the A-ring from the polycyclic ring structure of 3- ketosteroids. Is also involved in the formation of 3-keto-1,4- diene-steroid from 3-keto-4-ene-steroid [H]
COG id: COG1053
COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the FAD-dependent oxidoreductase 2 family. 3-oxosteroid dehydrogenase subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: =1.3.99.4 [H]
Molecular weight: Translated: 62820; Mature: 62820
Theoretical pI: Translated: 7.96; Mature: 7.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKDPIVECDVLVVGSGAGGLSAAVTAAILGLRVMVVEKEDVFGGTTAWSGGWLWIPRNH CCCCCCEEEEEEEEECCCCCHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCEEEEECCC LAVRAGIEEDIEVPRTYLRSELGGQFDEARVNAFLEHGPAMLDFFESHSSVRFVDGNAIP EEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHCCCCEEEECCCCCC DFHVTPGAKTGGRSVCAMPFDGRQLGPLIDKLRQPLSVITLGGMGLMAGRDITHFYRATR CCEECCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHH SVRSALYVTRRLAQLAWHKLRYGRSMHLVNGNALIARLLKSAIDAGVDLNAGATVIDLIT HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHHH EKQRVAGAHLKIDGAVREVRALRGVVLACGGYPHDIERRKSTFFYTPSGLDHWSAAPRTN HHHHHCCCEEEEHHHHHHHHHHHCEEEECCCCCHHHHHCCCEEEECCCCCCCCCCCCCCC TGDGIRLGESVGGRFDDTLHAPAAWVPVSLVPQQNGAEDVVFPHLIDRAKPGVIAVSKAG CCCCEEECHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEEECHH ERFVNEASPYYDFISALLEITPAGEDVHAWLICDHRFQRRYGLGFSKPFPFPIQPHLDSG HHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHCCCCCCCCCCCCCCCCCCC YLLQAATLDELAVRCGIEPRALVRTIQTYNAHARDGADPQFHRGSTPFNRAQGDSLHAPN CEEEECCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PCVAPIERAPFYAVKLLPGSLGTFQGLQTDAQSRVLDGNHRVIPGLYAAGNDSASVMGGF CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHEECCCCEECCCEEECCCCCCCEECCC YPSGGITLGPAMTFGYLAGRSLAGERERASRIAENEIEVAR CCCCCEEECHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCC >Mature Secondary Structure MKKDPIVECDVLVVGSGAGGLSAAVTAAILGLRVMVVEKEDVFGGTTAWSGGWLWIPRNH CCCCCCEEEEEEEEECCCCCHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCEEEEECCC LAVRAGIEEDIEVPRTYLRSELGGQFDEARVNAFLEHGPAMLDFFESHSSVRFVDGNAIP EEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHCCCCEEEECCCCCC DFHVTPGAKTGGRSVCAMPFDGRQLGPLIDKLRQPLSVITLGGMGLMAGRDITHFYRATR CCEECCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHH SVRSALYVTRRLAQLAWHKLRYGRSMHLVNGNALIARLLKSAIDAGVDLNAGATVIDLIT HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHHH EKQRVAGAHLKIDGAVREVRALRGVVLACGGYPHDIERRKSTFFYTPSGLDHWSAAPRTN HHHHHCCCEEEEHHHHHHHHHHHCEEEECCCCCHHHHHCCCEEEECCCCCCCCCCCCCCC TGDGIRLGESVGGRFDDTLHAPAAWVPVSLVPQQNGAEDVVFPHLIDRAKPGVIAVSKAG CCCCEEECHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEEECHH ERFVNEASPYYDFISALLEITPAGEDVHAWLICDHRFQRRYGLGFSKPFPFPIQPHLDSG HHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHCCCCCCCCCCCCCCCCCCC YLLQAATLDELAVRCGIEPRALVRTIQTYNAHARDGADPQFHRGSTPFNRAQGDSLHAPN CEEEECCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PCVAPIERAPFYAVKLLPGSLGTFQGLQTDAQSRVLDGNHRVIPGLYAAGNDSASVMGGF CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHEECCCCEECCCEEECCCCCCCEECCC YPSGGITLGPAMTFGYLAGRSLAGERERASRIAENEIEVAR CCCCCEEECHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12218036 [H]