| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238027333
Identifier: 238027333
GI number: 238027333
Start: 1902729
End: 1903784
Strand: Reverse
Name: 238027333
Synonym: bglu_1g17230
Alternate gene names: NA
Gene position: 1903784-1902729 (Counterclockwise)
Preceding gene: 238027334
Following gene: 238027330
Centisome position: 48.73
GC content: 60.61
Gene sequence:
>1056_bases ATGAGCACCGCCCTCGTTCCGACCACCGACGCGCACGACGTTGCAACGCGCGCGCCGCTGTCCTCAATCGAAACGTTCAC GTTCGGCGATGCTGTCGCCGCGATCGACGGCGCCGACATTCTCGACTACGCCGAGCTGTGGGCGATCGACGACTATTTCG AGCCGCCGATCAGCCGCGCCGGGCTCGCGAAATCGCTTCGTGCGGGCACGCATCACGCGTCCGCGCTGTACTTCAAACGA AACGTGCTCGCCTCGACGTTCATCGAGCATCCGAAGTTTTCGCGCGATGCGTTCCGGCGCCTCGCCCTCGATTTTCTAGT TTTCGGCGACGCGTACCTCGAACGCGAGCGCAACCGCGCAGGTGGAGCACTCCGATACCGCCCTTCCCCAGCGAAATACA CGCGCCGAAAAACGGATCTGGTCAATTTCGTGTTCATCGACGGCTTTCTCAACCGCCACCAGTTCGACACAGGGTCGATC TTTCAGCTAATGGAACCGGACGTGAATCAGGAGGTGTATGGCATGCCCGAGTACGTCGCATCGCTGCAATCCGCGTGGCT GAACGAATCGGCCACGCTGTTCCGGCGCCGCTACTACGCGAACGGCTCGCACGCGGGGTTCATCCTGTACCTCAACGACC CGAACATGGACCCGGACGACGTAGACGCGATCCGGAAGGCGTTGCGCGACTCGAAGGGCATCGGCAATTTCCGGAACCTG TTTTTGCACTCGGCCGCGCGAAACAGCGGCGGCGAAAAAGGCGCGGTCCAACTGATCCCGATTTCCGAGGTTGCAGCGAA AGACCAGTTTTTCGACATCAAGAACGTAACGCGCGACGACACGCTCGCGGCCCACCGCGTGCCGCCGCAGTTGCTCGGCA TCGTCCCGAGCAACACGGGCGGGTTCGGTGCGGCCGACACTGCCGCGCGCGTGTTCGGACGGAACGAAATCCTTCCGCTA CAACAGCAATTTCTCAAAATTAATGAATGGGCAGGCGAGGAAATTGTTCGATTTACCGACTATATCGTTCCGGCCGCATC AATCTCTCATCCTTGA
Upstream 100 bases:
>100_bases AAATCGGCCACGCTGACCTCGCATGGGCCTGCCTTCACGCGCTCGATAACGAACCCCTCGAAGGTGCCAGCCGCGCACGC AGCACCGTGGAGATTTACTG
Downstream 100 bases:
>100_bases TCCTGTATGCAAGATAAATTACGGCGGCCATGAATTCCCTCATCCTGATTCCCGTTACCAGACTGACCAGTCACTGTATG GCATTTCTCCCGTCTGCCGG
Product: putative phage portal vertex protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 351; Mature: 350
Protein sequence:
>351_residues MSTALVPTTDAHDVATRAPLSSIETFTFGDAVAAIDGADILDYAELWAIDDYFEPPISRAGLAKSLRAGTHHASALYFKR NVLASTFIEHPKFSRDAFRRLALDFLVFGDAYLERERNRAGGALRYRPSPAKYTRRKTDLVNFVFIDGFLNRHQFDTGSI FQLMEPDVNQEVYGMPEYVASLQSAWLNESATLFRRRYYANGSHAGFILYLNDPNMDPDDVDAIRKALRDSKGIGNFRNL FLHSAARNSGGEKGAVQLIPISEVAAKDQFFDIKNVTRDDTLAAHRVPPQLLGIVPSNTGGFGAADTAARVFGRNEILPL QQQFLKINEWAGEEIVRFTDYIVPAASISHP
Sequences:
>Translated_351_residues MSTALVPTTDAHDVATRAPLSSIETFTFGDAVAAIDGADILDYAELWAIDDYFEPPISRAGLAKSLRAGTHHASALYFKR NVLASTFIEHPKFSRDAFRRLALDFLVFGDAYLERERNRAGGALRYRPSPAKYTRRKTDLVNFVFIDGFLNRHQFDTGSI FQLMEPDVNQEVYGMPEYVASLQSAWLNESATLFRRRYYANGSHAGFILYLNDPNMDPDDVDAIRKALRDSKGIGNFRNL FLHSAARNSGGEKGAVQLIPISEVAAKDQFFDIKNVTRDDTLAAHRVPPQLLGIVPSNTGGFGAADTAARVFGRNEILPL QQQFLKINEWAGEEIVRFTDYIVPAASISHP >Mature_350_residues STALVPTTDAHDVATRAPLSSIETFTFGDAVAAIDGADILDYAELWAIDDYFEPPISRAGLAKSLRAGTHHASALYFKRN VLASTFIEHPKFSRDAFRRLALDFLVFGDAYLERERNRAGGALRYRPSPAKYTRRKTDLVNFVFIDGFLNRHQFDTGSIF QLMEPDVNQEVYGMPEYVASLQSAWLNESATLFRRRYYANGSHAGFILYLNDPNMDPDDVDAIRKALRDSKGIGNFRNLF LHSAARNSGGEKGAVQLIPISEVAAKDQFFDIKNVTRDDTLAAHRVPPQLLGIVPSNTGGFGAADTAARVFGRNEILPLQ QQFLKINEWAGEEIVRFTDYIVPAASISHP
Specific function: Unknown
COG id: COG5518
COG function: function code R; Bacteriophage capsid portal protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phage portal family. PBSX subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006944 - InterPro: IPR006430 [H]
Pfam domain/function: PF04860 Phage_portal [H]
EC number: NA
Molecular weight: Translated: 39052; Mature: 38921
Theoretical pI: Translated: 6.43; Mature: 6.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTALVPTTDAHDVATRAPLSSIETFTFGDAVAAIDGADILDYAELWAIDDYFEPPISRA CCCCCCCCCCCHHHHHHCCHHHCCEEECCCHHHHCCCCHHHHHHHHHCCCHHCCCCHHHH GLAKSLRAGTHHASALYFKRNVLASTFIEHPKFSRDAFRRLALDFLVFGDAYLERERNRA HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC GGALRYRPSPAKYTRRKTDLVNFVFIDGFLNRHQFDTGSIFQLMEPDVNQEVYGMPEYVA CCEEEECCCCHHHHHHHHHHEEEEEEECHHHHCCCCCCCCHHHCCCCCCCHHCCCHHHHH SLQSAWLNESATLFRRRYYANGSHAGFILYLNDPNMDPDDVDAIRKALRDSKGIGNFRNL HHHHHHCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHH FLHSAARNSGGEKGAVQLIPISEVAAKDQFFDIKNVTRDDTLAAHRVPPQLLGIVPSNTG HHHHHHHCCCCCCCCEEEEEHHHHHHCCHHEHHHCCCCCCCHHHHCCCHHHEEEECCCCC GFGAADTAARVFGRNEILPLQQQFLKINEWAGEEIVRFTDYIVPAASISHP CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure STALVPTTDAHDVATRAPLSSIETFTFGDAVAAIDGADILDYAELWAIDDYFEPPISRA CCCCCCCCCCHHHHHHCCHHHCCEEECCCHHHHCCCCHHHHHHHHHCCCHHCCCCHHHH GLAKSLRAGTHHASALYFKRNVLASTFIEHPKFSRDAFRRLALDFLVFGDAYLERERNRA HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC GGALRYRPSPAKYTRRKTDLVNFVFIDGFLNRHQFDTGSIFQLMEPDVNQEVYGMPEYVA CCEEEECCCCHHHHHHHHHHEEEEEEECHHHHCCCCCCCCHHHCCCCCCCHHCCCHHHHH SLQSAWLNESATLFRRRYYANGSHAGFILYLNDPNMDPDDVDAIRKALRDSKGIGNFRNL HHHHHHCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHH FLHSAARNSGGEKGAVQLIPISEVAAKDQFFDIKNVTRDDTLAAHRVPPQLLGIVPSNTG HHHHHHHCCCCCCCCEEEEEHHHHHHCCHHEHHHCCCCCCCHHHHCCCHHHEEEECCCCC GFGAADTAARVFGRNEILPLQQQFLKINEWAGEEIVRFTDYIVPAASISHP CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1701261 [H]