| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238027324
Identifier: 238027324
GI number: 238027324
Start: 1894975
End: 1896882
Strand: Direct
Name: 238027324
Synonym: bglu_1g17140
Alternate gene names: NA
Gene position: 1894975-1896882 (Clockwise)
Preceding gene: 238027323
Following gene: 238027325
Centisome position: 48.51
GC content: 63.94
Gene sequence:
>1908_bases ATGTGGATCTATGCGCACGACGCCGAAAGCAGCGTTCCCGCACTCCCCGAAGCGAACAAGGCTAAAAAGCGCCTTCCCGT GAAGTGGATGCGCCGCGCGCTTGAGCAGGCGCGCGACGCCGGGCGCGAAAGTGCGCGCAAGTATCGCGAGCGAACCGGGT TCAACGCGTCGCACATGTTCGATCTGGCCGCCGCCGCTAACTCGCTGCGTGACTTTCTCGAAGATCATGCGCCGGACGGC ATGCCTGTTTCCCCTGACGCGACCGATCATGAAATCTGCATGAAGGCCCGCCGCATCGCGTCCGATGTGACGATGCGCGC GTATGGGCTCGAACTGGCCCATGCGCTCGTCGTCGCGCGGGCGACGTGCGGCGCCTACAACGTCGAGATGCCGAATTTCG AGCACCCGGCCGATCAGGTCGCGCGTGTGAAGTGCGAACTGTGGTGGCGTCGCCAGTTGCGCAAGATGCACATTCGTAGC TTGGAACACTCGAACATTCGTCTGCACTTCGTCCACTTGAAAGCGGAACCGTACGCGAGCGACGAAGCCGTACGGCGACG CATTGCCCAGAACCGGCGCAACGCTCGCACGCTCGAAGCGGTGACGATGGAGAACGAAGACGGGCAGCGCTTCACGCTCG CCGATCTGGCGTCGAAGGGCATTTCGAACAAGGCATTGAAGCGCGGTGAACTGTTCACGCGCCTGCGCGGACTGGAAGAA CTGGCCGACGGTGCGCGGTATCGCGGCGTCATGTTCACGCTGACTTGCCCGAGCCGTTTCCATGCGGTCAGGCAGACCGG AAGCTGGTTCAAGCCAAACCCGAACTATGCGGGCGTCACACCGCGCGACGGGCAGGCGTACTTGCGGAAGGTGTGGCAAC GCATCCGCGCCGAATTGAGCCGCGAGGGTGTGACGTACTTCGGCATGCGCGTTGCGGAGCCGCATCACGACGGCTCGCCG CATTGGCACGGTCTGGTGTTTTCGAACGACGTCAAGCGGTTCTGCGAAATCATGCGCAAACACGGCCTGCGCGACTCCGG CAACGAACCGGGCGCGCGCGAGCATCGCGTGCGCTTCGAACTGATCGACAAGGCGAAAGGCTCGGCGGTCGGGTACATCG CCAAATACATTTCCAAGAACATCGACGGTCACGCGGTCGGCGACCATAAAACAAACGAAGGCTACGTGGTGCAGTCGGAT TTCTGGGACGACGACGAAATCACGCCGTCGACTCGCGTAGAGACGTGGGCCGCGTTGTGGGGCATCCGACAGTTCCAGCA GTTCGGCGGCGCACCGGTTGGCGTGTGGCGCGAGCTGCGCCGCGTGAAAGAGGACGATTTGCCCGCGATCGAAGAATCGG CGCGCATCGTGGCCGCGTGGACGGCAGCGCAGAAGCGCGACGACAAACCCGCCGATTGGGCAGCGTACTCGCGCGCAATG GGCGGCATCGCGGGCGAGGCCCGCATGGTCTATATCCGACACACGATCGAGCATCGCGAGGGGCGATATGGCATCGCGCC GGTACGCGTGCCGCACGGTGTTGAGGCTATCGGCGTCGCGAGCATCGTTGACGGGCTTTGCTCGTACTCCCGCGAAACGG AGATTTTTGTACCGTCGACGCGTCACGTGTGGCGGGTGGTTCGGCGCGGCGGCGCAGCCGCCCGCCCTTGGACTGGTGTC AATAACTGTACGCAGGAGACCGAGCGGGTCGAAGCGCCAGAAACGTCGGTCGCCGCATGGCTCGAATACGCGGAGTCTTT CCGCGTCGATCCACCCGCAGATCCGGGCCGCACGCGCCGCGAGGGCGCATCTGCGCGCGTTGCGCACGACGTATCCGACT GGCTGGCCGACTACGACACGGCCGATGCCACGCAGAACCTGCAACCTAACCATTCGGGAGCCCTATGA
Upstream 100 bases:
>100_bases GTGGTGCGGAACGCACCCCGACGAAGGTACGGAACCCGCATGGCCCGTTAAAGCGTCGCGCCCCGCGTAACGTTCCCCCT CTCGAATTCCAGACGTATCT
Downstream 100 bases:
>100_bases ACGTCAGCTATCGCGATCCGCACGACATGTCGATCGAATGTCCCGCATGCGACGGGAAGATCGAGGCGCGTCATTCTGAG CCGATGAGTGACACGATGCG
Product: bacteriophage replication protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 635; Mature: 635
Protein sequence:
>635_residues MWIYAHDAESSVPALPEANKAKKRLPVKWMRRALEQARDAGRESARKYRERTGFNASHMFDLAAAANSLRDFLEDHAPDG MPVSPDATDHEICMKARRIASDVTMRAYGLELAHALVVARATCGAYNVEMPNFEHPADQVARVKCELWWRRQLRKMHIRS LEHSNIRLHFVHLKAEPYASDEAVRRRIAQNRRNARTLEAVTMENEDGQRFTLADLASKGISNKALKRGELFTRLRGLEE LADGARYRGVMFTLTCPSRFHAVRQTGSWFKPNPNYAGVTPRDGQAYLRKVWQRIRAELSREGVTYFGMRVAEPHHDGSP HWHGLVFSNDVKRFCEIMRKHGLRDSGNEPGAREHRVRFELIDKAKGSAVGYIAKYISKNIDGHAVGDHKTNEGYVVQSD FWDDDEITPSTRVETWAALWGIRQFQQFGGAPVGVWRELRRVKEDDLPAIEESARIVAAWTAAQKRDDKPADWAAYSRAM GGIAGEARMVYIRHTIEHREGRYGIAPVRVPHGVEAIGVASIVDGLCSYSRETEIFVPSTRHVWRVVRRGGAAARPWTGV NNCTQETERVEAPETSVAAWLEYAESFRVDPPADPGRTRREGASARVAHDVSDWLADYDTADATQNLQPNHSGAL
Sequences:
>Translated_635_residues MWIYAHDAESSVPALPEANKAKKRLPVKWMRRALEQARDAGRESARKYRERTGFNASHMFDLAAAANSLRDFLEDHAPDG MPVSPDATDHEICMKARRIASDVTMRAYGLELAHALVVARATCGAYNVEMPNFEHPADQVARVKCELWWRRQLRKMHIRS LEHSNIRLHFVHLKAEPYASDEAVRRRIAQNRRNARTLEAVTMENEDGQRFTLADLASKGISNKALKRGELFTRLRGLEE LADGARYRGVMFTLTCPSRFHAVRQTGSWFKPNPNYAGVTPRDGQAYLRKVWQRIRAELSREGVTYFGMRVAEPHHDGSP HWHGLVFSNDVKRFCEIMRKHGLRDSGNEPGAREHRVRFELIDKAKGSAVGYIAKYISKNIDGHAVGDHKTNEGYVVQSD FWDDDEITPSTRVETWAALWGIRQFQQFGGAPVGVWRELRRVKEDDLPAIEESARIVAAWTAAQKRDDKPADWAAYSRAM GGIAGEARMVYIRHTIEHREGRYGIAPVRVPHGVEAIGVASIVDGLCSYSRETEIFVPSTRHVWRVVRRGGAAARPWTGV NNCTQETERVEAPETSVAAWLEYAESFRVDPPADPGRTRREGASARVAHDVSDWLADYDTADATQNLQPNHSGAL >Mature_635_residues MWIYAHDAESSVPALPEANKAKKRLPVKWMRRALEQARDAGRESARKYRERTGFNASHMFDLAAAANSLRDFLEDHAPDG MPVSPDATDHEICMKARRIASDVTMRAYGLELAHALVVARATCGAYNVEMPNFEHPADQVARVKCELWWRRQLRKMHIRS LEHSNIRLHFVHLKAEPYASDEAVRRRIAQNRRNARTLEAVTMENEDGQRFTLADLASKGISNKALKRGELFTRLRGLEE LADGARYRGVMFTLTCPSRFHAVRQTGSWFKPNPNYAGVTPRDGQAYLRKVWQRIRAELSREGVTYFGMRVAEPHHDGSP HWHGLVFSNDVKRFCEIMRKHGLRDSGNEPGAREHRVRFELIDKAKGSAVGYIAKYISKNIDGHAVGDHKTNEGYVVQSD FWDDDEITPSTRVETWAALWGIRQFQQFGGAPVGVWRELRRVKEDDLPAIEESARIVAAWTAAQKRDDKPADWAAYSRAM GGIAGEARMVYIRHTIEHREGRYGIAPVRVPHGVEAIGVASIVDGLCSYSRETEIFVPSTRHVWRVVRRGGAAARPWTGV NNCTQETERVEAPETSVAAWLEYAESFRVDPPADPGRTRREGASARVAHDVSDWLADYDTADATQNLQPNHSGAL
Specific function: Possible endonuclease which induces a single-strand cut and initiates DNA replication (Potential) [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phage GPA family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020220 - InterPro: IPR008766 - ProDom: PD092055 [H]
Pfam domain/function: PF05840 Phage_GPA [H]
EC number: NA
Molecular weight: Translated: 71755; Mature: 71755
Theoretical pI: Translated: 9.17; Mature: 9.17
Prosite motif: PS00639 THIOL_PROTEASE_HIS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWIYAHDAESSVPALPEANKAKKRLPVKWMRRALEQARDAGRESARKYRERTGFNASHMF CEEEEECCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH DLAAAANSLRDFLEDHAPDGMPVSPDATDHEICMKARRIASDVTMRAYGLELAHALVVAR HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ATCGAYNVEMPNFEHPADQVARVKCELWWRRQLRKMHIRSLEHSNIRLHFVHLKAEPYAS HHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCC DEAVRRRIAQNRRNARTLEAVTMENEDGQRFTLADLASKGISNKALKRGELFTRLRGLEE HHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHH LADGARYRGVMFTLTCPSRFHAVRQTGSWFKPNPNYAGVTPRDGQAYLRKVWQRIRAELS HHCCHHHCCEEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH REGVTYFGMRVAEPHHDGSPHWHGLVFSNDVKRFCEIMRKHGLRDSGNEPGAREHRVRFE HCCCEEEEEEEECCCCCCCCCEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH LIDKAKGSAVGYIAKYISKNIDGHAVGDHKTNEGYVVQSDFWDDDEITPSTRVETWAALW HHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHH GIRQFQQFGGAPVGVWRELRRVKEDDLPAIEESARIVAAWTAAQKRDDKPADWAAYSRAM HHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHCCEEEEEEHHHHHCCCCCCHHHHHHHHH GGIAGEARMVYIRHTIEHREGRYGIAPVRVPHGVEAIGVASIVDGLCSYSRETEIFVPST CCCCCCCEEEEEEEHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCH RHVWRVVRRGGAAARPWTGVNNCTQETERVEAPETSVAAWLEYAESFRVDPPADPGRTRR HHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHH EGASARVAHDVSDWLADYDTADATQNLQPNHSGAL CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MWIYAHDAESSVPALPEANKAKKRLPVKWMRRALEQARDAGRESARKYRERTGFNASHMF CEEEEECCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH DLAAAANSLRDFLEDHAPDGMPVSPDATDHEICMKARRIASDVTMRAYGLELAHALVVAR HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ATCGAYNVEMPNFEHPADQVARVKCELWWRRQLRKMHIRSLEHSNIRLHFVHLKAEPYAS HHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCC DEAVRRRIAQNRRNARTLEAVTMENEDGQRFTLADLASKGISNKALKRGELFTRLRGLEE HHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHH LADGARYRGVMFTLTCPSRFHAVRQTGSWFKPNPNYAGVTPRDGQAYLRKVWQRIRAELS HHCCHHHCCEEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH REGVTYFGMRVAEPHHDGSPHWHGLVFSNDVKRFCEIMRKHGLRDSGNEPGAREHRVRFE HCCCEEEEEEEECCCCCCCCCEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH LIDKAKGSAVGYIAKYISKNIDGHAVGDHKTNEGYVVQSDFWDDDEITPSTRVETWAALW HHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHH GIRQFQQFGGAPVGVWRELRRVKEDDLPAIEESARIVAAWTAAQKRDDKPADWAAYSRAM HHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHCCEEEEEEHHHHHCCCCCCHHHHHHHHH GGIAGEARMVYIRHTIEHREGRYGIAPVRVPHGVEAIGVASIVDGLCSYSRETEIFVPST CCCCCCCEEEEEEEHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCH RHVWRVVRRGGAAARPWTGVNNCTQETERVEAPETSVAAWLEYAESFRVDPPADPGRTRR HHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHH EGASARVAHDVSDWLADYDTADATQNLQPNHSGAL CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11677608; 12644504 [H]