| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is yeiH [C]
Identifier: 238027234
GI number: 238027234
Start: 1777312
End: 1778385
Strand: Reverse
Name: yeiH [C]
Synonym: bglu_1g16200
Alternate gene names: 238027234
Gene position: 1778385-1777312 (Counterclockwise)
Preceding gene: 238027243
Following gene: 238027233
Centisome position: 45.52
GC content: 71.79
Gene sequence:
>1074_bases ATGAGCACCACCGCCCCCACCCTGTCGCACGCCGCCGCGTCGTCGCTGCGCGGCCAGTTGAACGGCGTGCTGTTCGTCGC GCTGTTCGCCGCGGCGGTCACGAGCCTGTCCGCGCTGCCTGCCGTCGCGCGGCTCGGCCTCTCGCCGCTGATCGTCGGCA TCATCGCCGGCACCGTTTACGGCAACGCGCTGCGCGACGGCATGCCGGCCAGCTGGGCGGCCGGCGTCAACTTCTCGGCG CGCAGGCTGCTGCGCATCGCGGTGGCGTTCTTCGGGCTGCGGGTGAGCCTGCAGGAAATCGCGCAGGTCGGGCTGCCGGG GCTGGCCGTATCGGTGCTGGTGGTGCTCAGCACGCTGGTGATCGGCACCTGGGTCGGCACGAAGCTGCTCAAGCTCGACC GCGACACGGCGCTGCTGACGGCGGCCGGCAGCGCGATCTGCGGCGCCGCGGCGGTGCTCGCGTTCGAATCGACGCTGCAG TCGAAGCCGCACCAGAGCGCGATGGCGGTCGGCAGCGTGGTGCTGTTCGGCACGCTCTCGATGTTCGCCTACCCGCTCGC CTGGCATGCCGGCTGGATTCCGCTCGACGCGCAGGGCCTGGGCCTCTTCTTCGGCGGCACGATCCACGAGGTCGCGCAGG TGGTGGGAGCGGCGAGCGACGTGAGCGCGCAAGTGGTGCACACCGCGACGATCGTCAAGATGACGCGCGTGATGCTGCTG GTGCCGGTGCTGCTCGCGCTCGGCGCCTGGCTCGCGCGGCCGCTGCGCGGCACGCATGGCGCCGCCGCCGGACACGGCCG GCGCAAGCTCGCGGTGCCGTGGTTCGCGCTCGGCTTCCTCGGCTTCGTGATCGTGAATTCGCTCGGCGTGCTGGCCGACT CGACGGTCCATGCGCTGAACACGCTCGACACCTTCGCACTGACCATGGCCATGACGGCGCTCGGCATCGAGACGCGCCTC TCGCAGATCCGCGCGGCCGGCCCGCGTGCGCTGACGGCCGGCTTGGTGCTGTACCTGTGGCTGATCGCGGGCGGCTTCGG CATCACCTGGCTGGCCGAGCGCTGGCTTGGCTGA
Upstream 100 bases:
>100_bases TATCAGATTCCCCGATAGTGGATGTCATTAATCACAATTTCTCATATCGATATATCCAAATTAGGATTGGCGCATCCCAT CGAACGCCGGAAGCCTCCCC
Downstream 100 bases:
>100_bases GCCCCCGGACCGCCTTCCCCGCCCCGCGCCGCGCCCGCCTCCCCGGGCGGGCGCGGCGCGGTGCTATGCTTGCGGTCGAC TTTCTCCGCCCGCCGACCCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 357; Mature: 356
Protein sequence:
>357_residues MSTTAPTLSHAAASSLRGQLNGVLFVALFAAAVTSLSALPAVARLGLSPLIVGIIAGTVYGNALRDGMPASWAAGVNFSA RRLLRIAVAFFGLRVSLQEIAQVGLPGLAVSVLVVLSTLVIGTWVGTKLLKLDRDTALLTAAGSAICGAAAVLAFESTLQ SKPHQSAMAVGSVVLFGTLSMFAYPLAWHAGWIPLDAQGLGLFFGGTIHEVAQVVGAASDVSAQVVHTATIVKMTRVMLL VPVLLALGAWLARPLRGTHGAAAGHGRRKLAVPWFALGFLGFVIVNSLGVLADSTVHALNTLDTFALTMAMTALGIETRL SQIRAAGPRALTAGLVLYLWLIAGGFGITWLAERWLG
Sequences:
>Translated_357_residues MSTTAPTLSHAAASSLRGQLNGVLFVALFAAAVTSLSALPAVARLGLSPLIVGIIAGTVYGNALRDGMPASWAAGVNFSA RRLLRIAVAFFGLRVSLQEIAQVGLPGLAVSVLVVLSTLVIGTWVGTKLLKLDRDTALLTAAGSAICGAAAVLAFESTLQ SKPHQSAMAVGSVVLFGTLSMFAYPLAWHAGWIPLDAQGLGLFFGGTIHEVAQVVGAASDVSAQVVHTATIVKMTRVMLL VPVLLALGAWLARPLRGTHGAAAGHGRRKLAVPWFALGFLGFVIVNSLGVLADSTVHALNTLDTFALTMAMTALGIETRL SQIRAAGPRALTAGLVLYLWLIAGGFGITWLAERWLG >Mature_356_residues STTAPTLSHAAASSLRGQLNGVLFVALFAAAVTSLSALPAVARLGLSPLIVGIIAGTVYGNALRDGMPASWAAGVNFSAR RLLRIAVAFFGLRVSLQEIAQVGLPGLAVSVLVVLSTLVIGTWVGTKLLKLDRDTALLTAAGSAICGAAAVLAFESTLQS KPHQSAMAVGSVVLFGTLSMFAYPLAWHAGWIPLDAQGLGLFFGGTIHEVAQVVGAASDVSAQVVHTATIVKMTRVMLLV PVLLALGAWLARPLRGTHGAAAGHGRRKLAVPWFALGFLGFVIVNSLGVLADSTVHALNTLDTFALTMAMTALGIETRLS QIRAAGPRALTAGLVLYLWLIAGGFGITWLAERWLG
Specific function: Unknown
COG id: COG2855
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0324 family [H]
Homologues:
Organism=Escherichia coli, GI1788482, Length=318, Percent_Identity=39.622641509434, Blast_Score=208, Evalue=4e-55,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004630 - InterPro: IPR018383 [H]
Pfam domain/function: PF03601 Cons_hypoth698 [H]
EC number: NA
Molecular weight: Translated: 36886; Mature: 36755
Theoretical pI: Translated: 11.38; Mature: 11.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTTAPTLSHAAASSLRGQLNGVLFVALFAAAVTSLSALPAVARLGLSPLIVGIIAGTVY CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH GNALRDGMPASWAAGVNFSARRLLRIAVAFFGLRVSLQEIAQVGLPGLAVSVLVVLSTLV HHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH IGTWVGTKLLKLDRDTALLTAAGSAICGAAAVLAFESTLQSKPHQSAMAVGSVVLFGTLS HHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH MFAYPLAWHAGWIPLDAQGLGLFFGGTIHEVAQVVGAASDVSAQVVHTATIVKMTRVMLL HHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH VPVLLALGAWLARPLRGTHGAAAGHGRRKLAVPWFALGFLGFVIVNSLGVLADSTVHALN HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TLDTFALTMAMTALGIETRLSQIRAAGPRALTAGLVLYLWLIAGGFGITWLAERWLG HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCC >Mature Secondary Structure STTAPTLSHAAASSLRGQLNGVLFVALFAAAVTSLSALPAVARLGLSPLIVGIIAGTVY CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH GNALRDGMPASWAAGVNFSARRLLRIAVAFFGLRVSLQEIAQVGLPGLAVSVLVVLSTLV HHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH IGTWVGTKLLKLDRDTALLTAAGSAICGAAAVLAFESTLQSKPHQSAMAVGSVVLFGTLS HHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH MFAYPLAWHAGWIPLDAQGLGLFFGGTIHEVAQVVGAASDVSAQVVHTATIVKMTRVMLL HHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH VPVLLALGAWLARPLRGTHGAAAGHGRRKLAVPWFALGFLGFVIVNSLGVLADSTVHALN HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TLDTFALTMAMTALGIETRLSQIRAAGPRALTAGLVLYLWLIAGGFGITWLAERWLG HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12534463 [H]