| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is yhjG [H]
Identifier: 238027216
GI number: 238027216
Start: 1751901
End: 1754168
Strand: Direct
Name: yhjG [H]
Synonym: bglu_1g16020
Alternate gene names: 238027216
Gene position: 1751901-1754168 (Clockwise)
Preceding gene: 238027213
Following gene: 238027217
Centisome position: 44.85
GC content: 70.37
Gene sequence:
>2268_bases ATGACGCTTCCACGAGTCATCGGCAAAACGGCGGCCTGGATCATCGGCATCCTCGTGGTGCTGATCGTTGCGCTCGTCGT CTTCATCGTCACCTTCGACTGGAATCGCGCGCGCCCCTGGATCAACCAGCGTGTGAGCACCGAAATCGGCCGGCCGTTCG CGATCCGCGGCGATCTGAAGGTGGGCTGGCAACGCCCGCGGGACGAGACCGGCTGGCGCGCATGGGTGCCCTGGCCGAGC GTCACCGCCAACGACATCGCGATCGGCAACCCCGACTGGACCCGGTCGCCGCAATTCGCGACGCTCGACGCCGCCCGCTT CGAGCTGGCCGTGCTGCCGCTGCTCGCGCACCGCGTGGTGATTCCCTCGATCGACATCGTCAATCCCGCGCTCGACGTCG AGCGGCTCGCCGACGGGCGCAACAATTGGACGTTCCAGTTCAAGCAGTCGGGCGAACCGTCGACCTGGAAGGTCGAGCTT CACGACTTCGGCTTCGCCAAGGGGACGGTCACCTATCGCGACGCGATCACCAAGGCCGACCTGAAGATCGCGATCGATAC GCTCGGTCAGCCGATTCCGCTCGGCGAAGTGATGAAGCAGCAGGAGGCGGCCTCGCGCGAGGCGTCGGCGCAGCGCATCG GCCGGGCCGGCGCGACGCAGCTGGCGAAGAAGGTGGAGGCAGCGTCCGCAGCGGCGGCCGCTTCAGCCGCTGCGGCGGCG TCCGCAGCCTCGGCCGCGAGCGCGGCCGCCCCCGGCGTGCCGGCCGCCGCGTCCGGCGCCTCGGCGGGCCGGGCGGACGG CGCCAGCGGCGCGGCCGCGGCGCCGCCCGCCTATGCGTTCGGCCTCGTGGTTCACGGCCGCTACAAGGGCGTGCCGATCG ACGGCACCGGCAAGATCGGCGGCGTGCTGGCGCTGCGCGACACCCGCCGGCCGTTTCCGCTGCAGGCCGACCTGAAGGCC GGCGACACGCGCCTGGCGATCGTCGGCACGCTGACCGACCCGATGCAGCTGGCGGCGATCGACCTGCGGCTCTGGCTGCA GGGCGCGAGCATGTCGCATCTGTATGCGCTGACGGGCGTGACGCTGCCCGACACGCCGCCCTATGCCACCGACGGCCGTC TGGTGGGCCGTTTCCGCCGCAACGCCAGCACGTTCCGCTACGAGAACTTCGACGGCCGGGTGGGCGGCAGCGACCTGCAC GGCACGCTGGTCTACGCCCAGGGCTCGCCGCGGCCGAAGCTGTCGGTCGAGCTGGTGTCCAACCTGCTGCGCTTTTCCGA CCTCGGGCCGGTGGTGGGGGCCGACAGCACCGCGAGCAAGCGCGCGCGGGGCAATGCCACCAAGCAGCCGGCCGACCGCG TGCTGCCGGTCGAGACGTTCCGCACCGACCGCTGGAAGGCGCTCGACGCGGACGTGAAGTTCACGGGCCGCCAGCTGATC AAGGACAAGGCGCTGCCGATCTCGGACCTCTACACCCACATCGTGATGCAGGACGGCGTGCTGTCGCTGATGCCGCTGCG CTTCGGCGTGGCGGGCGGCACGCTGTCCACCGACGCACGCCTCGACGGCAGTACGGTGCCGCTCAAGGGGCGCTTCTCGG TGGCTGCGCGCCACCTGGAGCTCAAGCAGCTGTTCCCGACCGTGAAGGTGATGCAGTCGGCGCTCGGCGAGATCAACGGC GACGCGACGCTCGCGGCCACCGGCAATTCGCCCGCCGCGCTGGCCGCCACTTCGACGGGCGAGCTGAAGGCGCTCGCCAC CGACGGCGCGATCAGCCGGCTGCTGATGGAGGCGGCCGGGCTCAACGTCGCGAACGTGGTCTACGAGAAGCTGTTCGGCA ACCGCGACGTGAAGATCAACTGCGCGGCCGTCGATTTCGTCGCCACCGACGGCATCCTGAACTCGAAGCTGTTCGCGCTC GACACCGACGACGCCGTGATCCGCGTGGACGGCAATCTCGACCTGCGCAACGAGGGCATCGATCTCGGCATCCATCCGCA GACCAAGGGCTTTCGCGTGTTCTCGCTGCGCTCGCCGCTCTACGTGAAGGGCACCTTCAAGAACCCGAAGGTGGGCGTCA ATGTCGGCGCGCTCGCGCTGCGCGCCGGCGCCGCGGTGGGGCTCGGCATCCTCAACCCGTTCGCGGCGCTGATTCCGCTG ATCGCGCCGAGCCACAACCGCGACGTGCCGTGCTCGGAATTGTTCTCGCAGCTGAAGGCGTCGCCGCAGGCGAAGGCTGC CGCGGCGGCCGCGGCGCACAAGCGGTGA
Upstream 100 bases:
>100_bases AGAGCTCGCGCGCGGTGCCATAATACCGACACTCGGTTGCGGCGGGTTCGGCGCGGCCTTCGCTTCGGTCAACTTCCCGA TAAAAACAACGGAGCTCGGC
Downstream 100 bases:
>100_bases CGCGCCGGCCCGCGGCGGCGCGGCGGCGGGCGGTCCGCGGTGAACAGTCGCCAATAAAGGCGTCGCATCGTATTTTCCCC GACGGCGGTGACGGCCTCGG
Product: AsmA family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 755; Mature: 754
Protein sequence:
>755_residues MTLPRVIGKTAAWIIGILVVLIVALVVFIVTFDWNRARPWINQRVSTEIGRPFAIRGDLKVGWQRPRDETGWRAWVPWPS VTANDIAIGNPDWTRSPQFATLDAARFELAVLPLLAHRVVIPSIDIVNPALDVERLADGRNNWTFQFKQSGEPSTWKVEL HDFGFAKGTVTYRDAITKADLKIAIDTLGQPIPLGEVMKQQEAASREASAQRIGRAGATQLAKKVEAASAAAAASAAAAA SAASAASAAAPGVPAAASGASAGRADGASGAAAAPPAYAFGLVVHGRYKGVPIDGTGKIGGVLALRDTRRPFPLQADLKA GDTRLAIVGTLTDPMQLAAIDLRLWLQGASMSHLYALTGVTLPDTPPYATDGRLVGRFRRNASTFRYENFDGRVGGSDLH GTLVYAQGSPRPKLSVELVSNLLRFSDLGPVVGADSTASKRARGNATKQPADRVLPVETFRTDRWKALDADVKFTGRQLI KDKALPISDLYTHIVMQDGVLSLMPLRFGVAGGTLSTDARLDGSTVPLKGRFSVAARHLELKQLFPTVKVMQSALGEING DATLAATGNSPAALAATSTGELKALATDGAISRLLMEAAGLNVANVVYEKLFGNRDVKINCAAVDFVATDGILNSKLFAL DTDDAVIRVDGNLDLRNEGIDLGIHPQTKGFRVFSLRSPLYVKGTFKNPKVGVNVGALALRAGAAVGLGILNPFAALIPL IAPSHNRDVPCSELFSQLKASPQAKAAAAAAAHKR
Sequences:
>Translated_755_residues MTLPRVIGKTAAWIIGILVVLIVALVVFIVTFDWNRARPWINQRVSTEIGRPFAIRGDLKVGWQRPRDETGWRAWVPWPS VTANDIAIGNPDWTRSPQFATLDAARFELAVLPLLAHRVVIPSIDIVNPALDVERLADGRNNWTFQFKQSGEPSTWKVEL HDFGFAKGTVTYRDAITKADLKIAIDTLGQPIPLGEVMKQQEAASREASAQRIGRAGATQLAKKVEAASAAAAASAAAAA SAASAASAAAPGVPAAASGASAGRADGASGAAAAPPAYAFGLVVHGRYKGVPIDGTGKIGGVLALRDTRRPFPLQADLKA GDTRLAIVGTLTDPMQLAAIDLRLWLQGASMSHLYALTGVTLPDTPPYATDGRLVGRFRRNASTFRYENFDGRVGGSDLH GTLVYAQGSPRPKLSVELVSNLLRFSDLGPVVGADSTASKRARGNATKQPADRVLPVETFRTDRWKALDADVKFTGRQLI KDKALPISDLYTHIVMQDGVLSLMPLRFGVAGGTLSTDARLDGSTVPLKGRFSVAARHLELKQLFPTVKVMQSALGEING DATLAATGNSPAALAATSTGELKALATDGAISRLLMEAAGLNVANVVYEKLFGNRDVKINCAAVDFVATDGILNSKLFAL DTDDAVIRVDGNLDLRNEGIDLGIHPQTKGFRVFSLRSPLYVKGTFKNPKVGVNVGALALRAGAAVGLGILNPFAALIPL IAPSHNRDVPCSELFSQLKASPQAKAAAAAAAHKR >Mature_754_residues TLPRVIGKTAAWIIGILVVLIVALVVFIVTFDWNRARPWINQRVSTEIGRPFAIRGDLKVGWQRPRDETGWRAWVPWPSV TANDIAIGNPDWTRSPQFATLDAARFELAVLPLLAHRVVIPSIDIVNPALDVERLADGRNNWTFQFKQSGEPSTWKVELH DFGFAKGTVTYRDAITKADLKIAIDTLGQPIPLGEVMKQQEAASREASAQRIGRAGATQLAKKVEAASAAAAASAAAAAS AASAASAAAPGVPAAASGASAGRADGASGAAAAPPAYAFGLVVHGRYKGVPIDGTGKIGGVLALRDTRRPFPLQADLKAG DTRLAIVGTLTDPMQLAAIDLRLWLQGASMSHLYALTGVTLPDTPPYATDGRLVGRFRRNASTFRYENFDGRVGGSDLHG TLVYAQGSPRPKLSVELVSNLLRFSDLGPVVGADSTASKRARGNATKQPADRVLPVETFRTDRWKALDADVKFTGRQLIK DKALPISDLYTHIVMQDGVLSLMPLRFGVAGGTLSTDARLDGSTVPLKGRFSVAARHLELKQLFPTVKVMQSALGEINGD ATLAATGNSPAALAATSTGELKALATDGAISRLLMEAAGLNVANVVYEKLFGNRDVKINCAAVDFVATDGILNSKLFALD TDDAVIRVDGNLDLRNEGIDLGIHPQTKGFRVFSLRSPLYVKGTFKNPKVGVNVGALALRAGAAVGLGILNPFAALIPLI APSHNRDVPCSELFSQLKASPQAKAAAAAAAHKR
Specific function: Unknown
COG id: COG2982
COG function: function code M; Uncharacterized protein involved in outer membrane biogenesis
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI226510981, Length=496, Percent_Identity=46.9758064516129, Blast_Score=457, Evalue=1e-130,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007844 [H]
Pfam domain/function: PF05170 AsmA [H]
EC number: NA
Molecular weight: Translated: 79875; Mature: 79744
Theoretical pI: Translated: 10.37; Mature: 10.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLPRVIGKTAAWIIGILVVLIVALVVFIVTFDWNRARPWINQRVSTEIGRPFAIRGDLK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEECCCE VGWQRPRDETGWRAWVPWPSVTANDIAIGNPDWTRSPQFATLDAARFELAVLPLLAHRVV ECCCCCCCCCCCEEECCCCCCCCCCEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHH IPSIDIVNPALDVERLADGRNNWTFQFKQSGEPSTWKVELHDFGFAKGTVTYRDAITKAD CCCCHHCCCCHHHHHHHCCCCCEEEEEECCCCCCEEEEEEEECCCCCCEEEHHHHHHHCC LKIAIDTLGQPIPLGEVMKQQEAASREASAQRIGRAGATQLAKKVEAASAAAAASAAAAA EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH SAASAASAAAPGVPAAASGASAGRADGASGAAAAPPAYAFGLVVHGRYKGVPIDGTGKIG HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECEECCCCCCCCCCCC GVLALRDTRRPFPLQADLKAGDTRLAIVGTLTDPMQLAAIDLRLWLQGASMSHLYALTGV EEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHEEEEEEEEECCCCCEEEEEECC TLPDTPPYATDGRLVGRFRRNASTFRYENFDGRVGGSDLHGTLVYAQGSPRPKLSVELVS CCCCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCEEHHHHH NLLRFSDLGPVVGADSTASKRARGNATKQPADRVLPVETFRTDRWKALDADVKFTGRQLI HHHHHHCCCCCCCCCCCHHHHHCCCCCCCCHHCCCCHHHHCCCCCEEECCCCCCCCHHHH KDKALPISDLYTHIVMQDGVLSLMPLRFGVAGGTLSTDARLDGSTVPLKGRFSVAARHLE HHCCCCHHHHHHHHHHHCCCHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHH LKQLFPTVKVMQSALGEINGDATLAATGNSPAALAATSTGELKALATDGAISRLLMEAAG HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEECCCCCEEEEECCHHHHHHHHHHHC LNVANVVYEKLFGNRDVKINCAAVDFVATDGILNSKLFALDTDDAVIRVDGNLDLRNEGI CCHHHHHHHHHHCCCCEEEEEEEEEEEEECCCCCCEEEEEECCCEEEEECCCEEECCCCE DLGIHPQTKGFRVFSLRSPLYVKGTFKNPKVGVNVGALALRAGAAVGLGILNPFAALIPL EECCCCCCCCEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH IAPSHNRDVPCSELFSQLKASPQAKAAAAAAAHKR CCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCC >Mature Secondary Structure TLPRVIGKTAAWIIGILVVLIVALVVFIVTFDWNRARPWINQRVSTEIGRPFAIRGDLK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEECCCE VGWQRPRDETGWRAWVPWPSVTANDIAIGNPDWTRSPQFATLDAARFELAVLPLLAHRVV ECCCCCCCCCCCEEECCCCCCCCCCEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHH IPSIDIVNPALDVERLADGRNNWTFQFKQSGEPSTWKVELHDFGFAKGTVTYRDAITKAD CCCCHHCCCCHHHHHHHCCCCCEEEEEECCCCCCEEEEEEEECCCCCCEEEHHHHHHHCC LKIAIDTLGQPIPLGEVMKQQEAASREASAQRIGRAGATQLAKKVEAASAAAAASAAAAA EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH SAASAASAAAPGVPAAASGASAGRADGASGAAAAPPAYAFGLVVHGRYKGVPIDGTGKIG HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECEECCCCCCCCCCCC GVLALRDTRRPFPLQADLKAGDTRLAIVGTLTDPMQLAAIDLRLWLQGASMSHLYALTGV EEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHEEEEEEEEECCCCCEEEEEECC TLPDTPPYATDGRLVGRFRRNASTFRYENFDGRVGGSDLHGTLVYAQGSPRPKLSVELVS CCCCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCEEHHHHH NLLRFSDLGPVVGADSTASKRARGNATKQPADRVLPVETFRTDRWKALDADVKFTGRQLI HHHHHHCCCCCCCCCCCHHHHHCCCCCCCCHHCCCCHHHHCCCCCEEECCCCCCCCHHHH KDKALPISDLYTHIVMQDGVLSLMPLRFGVAGGTLSTDARLDGSTVPLKGRFSVAARHLE HHCCCCHHHHHHHHHHHCCCHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHH LKQLFPTVKVMQSALGEINGDATLAATGNSPAALAATSTGELKALATDGAISRLLMEAAG HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEECCCCCEEEEECCHHHHHHHHHHHC LNVANVVYEKLFGNRDVKINCAAVDFVATDGILNSKLFALDTDDAVIRVDGNLDLRNEGI CCHHHHHHHHHHCCCCEEEEEEEEEEEEECCCCCCEEEEEECCCEEEEECCCEEECCCCE DLGIHPQTKGFRVFSLRSPLYVKGTFKNPKVGVNVGALALRAGAAVGLGILNPFAALIPL EECCCCCCCCEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH IAPSHNRDVPCSELFSQLKASPQAKAAAAAAAHKR CCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]