| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is kdgK [H]
Identifier: 238027206
GI number: 238027206
Start: 1741635
End: 1742585
Strand: Direct
Name: kdgK [H]
Synonym: bglu_1g15920
Alternate gene names: 238027206
Gene position: 1741635-1742585 (Clockwise)
Preceding gene: 238027205
Following gene: 238027207
Centisome position: 44.58
GC content: 74.03
Gene sequence:
>951_bases ATGACACGGACCATACCGGCGTCGGGCCAGCCGGCGCGGCCCGAGATCCTCGCGTTCGGCGAGGCGATGGTCGAATTCAA CCAGTCCCAGCCGGGCTCGCCGCAGTATCTGCAAGGCTTCGGCGGCGACACCTCGAACTTCTGCATCGCGGCGGCGCGCC AGGGGGCCCGCACCGGCTTCGTCTCGGCGGTCGGCGGCGACCACTTCGGCCGCCTGCTGCTCGATCTGTGGCGGCGCGAG CAGGTGGATACGGCGACGGTCCGCGTCGACGCGGCGGCCCCCACCGGCGTCTATTTCGTCTCGCACGGCGAGCACGGCCA CGCGTTCGACTATCTGCGTGCCGGCTCGGCCGCGAGCCGCTACGCGCCGGGCGATCTGCCGCTCGAGGCGCTGGCCGCGG CGCGCGTGCTGCATCTGTCCGGCATCAGTTTCGCGATCAGCGCGAGCGCCTGCGACGCGGCGTTCGCGGCCATCGACCAG GCACGCGCGCATGGCGTGCAGGTGAGCTTCGACACCAATCTGCGCCTGAAGCTGTGGCCGCTCGCGCGCGCCCGCGCCGT GATGCTGGAGGCGCTGCGCCGCACCGACATCTGCCTGCCGAGCTGGGACGACGTGACGGTGCTGACGGGCCTCGACGAGC GCGATGCGATCGTCGACGCGCTGCTCGACTGCGGCCCGCGGGTGGTCGCGCTGAAGCTCGGCAGGGACGGCGCCTACGTG GCCACCCGCGACGCGCGCCGCCTGGTGCCCGCTTTCGTCGTCGAGGCGCTCGACGCGACGGGGGCGGGCGACTGCTTCGG CGGCGCCTTCATCGCGCGCCTGGTGGCCGGCGACGACGCGTTCGTGGCGGCGCGCTACGCGAACGCGGCGGCGGCGCTCT CGACGCGCGGCTACGGCGCGGTCGCGCCGATTCCCGACGCGCGGGCGGTGCGCGCCTTGCTGGACGGCTGA
Upstream 100 bases:
>100_bases CGGCGCCGAAGGGCGCGAAGCGCTACAAGGTCGGCGATTTCGTATCGGTGGCGATCACCGGGGCGGACGGCCACGACCTG TGGGGCGAGGTCGAAGCGGC
Downstream 100 bases:
>100_bases GCCGGCGGCCGCGCGGCAGCCAGCCGGCGGCGGGCCCGGCCCGGTGGAAGGATTCTTCGGTTGCCGCCGGGCGCTTCCGT ATTACTCTGCGGGTCATTCG
Product: PfkB family kinase
Products: NA
Alternate protein names: 2-keto-3-deoxygluconokinase; 3-deoxy-2-oxo-D-gluconate kinase; KDG kinase [H]
Number of amino acids: Translated: 316; Mature: 315
Protein sequence:
>316_residues MTRTIPASGQPARPEILAFGEAMVEFNQSQPGSPQYLQGFGGDTSNFCIAAARQGARTGFVSAVGGDHFGRLLLDLWRRE QVDTATVRVDAAAPTGVYFVSHGEHGHAFDYLRAGSAASRYAPGDLPLEALAAARVLHLSGISFAISASACDAAFAAIDQ ARAHGVQVSFDTNLRLKLWPLARARAVMLEALRRTDICLPSWDDVTVLTGLDERDAIVDALLDCGPRVVALKLGRDGAYV ATRDARRLVPAFVVEALDATGAGDCFGGAFIARLVAGDDAFVAARYANAAAALSTRGYGAVAPIPDARAVRALLDG
Sequences:
>Translated_316_residues MTRTIPASGQPARPEILAFGEAMVEFNQSQPGSPQYLQGFGGDTSNFCIAAARQGARTGFVSAVGGDHFGRLLLDLWRRE QVDTATVRVDAAAPTGVYFVSHGEHGHAFDYLRAGSAASRYAPGDLPLEALAAARVLHLSGISFAISASACDAAFAAIDQ ARAHGVQVSFDTNLRLKLWPLARARAVMLEALRRTDICLPSWDDVTVLTGLDERDAIVDALLDCGPRVVALKLGRDGAYV ATRDARRLVPAFVVEALDATGAGDCFGGAFIARLVAGDDAFVAARYANAAAALSTRGYGAVAPIPDARAVRALLDG >Mature_315_residues TRTIPASGQPARPEILAFGEAMVEFNQSQPGSPQYLQGFGGDTSNFCIAAARQGARTGFVSAVGGDHFGRLLLDLWRREQ VDTATVRVDAAAPTGVYFVSHGEHGHAFDYLRAGSAASRYAPGDLPLEALAAARVLHLSGISFAISASACDAAFAAIDQA RAHGVQVSFDTNLRLKLWPLARARAVMLEALRRTDICLPSWDDVTVLTGLDERDAIVDALLDCGPRVVALKLGRDGAYVA TRDARRLVPAFVVEALDATGAGDCFGGAFIARLVAGDDAFVAARYANAAAALSTRGYGAVAPIPDARAVRALLDG
Specific function: Unknown
COG id: COG0524
COG function: function code G; Sugar kinases, ribokinase family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the carbohydrate kinase pfkB family [H]
Homologues:
Organism=Homo sapiens, GI11545855, Length=268, Percent_Identity=27.6119402985075, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI87081971, Length=280, Percent_Identity=31.0714285714286, Blast_Score=114, Evalue=6e-27, Organism=Escherichia coli, GI87082281, Length=304, Percent_Identity=31.25, Blast_Score=111, Evalue=5e-26, Organism=Escherichia coli, GI1790193, Length=246, Percent_Identity=27.6422764227642, Blast_Score=71, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17532905, Length=304, Percent_Identity=26.9736842105263, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011611 - InterPro: IPR002173 [H]
Pfam domain/function: PF00294 PfkB [H]
EC number: =2.7.1.45 [H]
Molecular weight: Translated: 33184; Mature: 33053
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRTIPASGQPARPEILAFGEAMVEFNQSQPGSPQYLQGFGGDTSNFCIAAARQGARTGF CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCEEEEEHHCCCCCCE VSAVGGDHFGRLLLDLWRREQVDTATVRVDAAAPTGVYFVSHGEHGHAFDYLRAGSAASR EEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHCCCCCCC YAPGDLPLEALAAARVLHLSGISFAISASACDAAFAAIDQARAHGVQVSFDTNLRLKLWP CCCCCCCHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCEEEEECCCEEEEEEC LARARAVMLEALRRTDICLPSWDDVTVLTGLDERDAIVDALLDCGPRVVALKLGRDGAYV HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEEECCCCCEE ATRDARRLVPAFVVEALDATGAGDCFGGAFIARLVAGDDAFVAARYANAAAALSTRGYGA EECHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCCC VAPIPDARAVRALLDG CCCCCCHHHHHHHHCC >Mature Secondary Structure TRTIPASGQPARPEILAFGEAMVEFNQSQPGSPQYLQGFGGDTSNFCIAAARQGARTGF CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCEEEEEHHCCCCCCE VSAVGGDHFGRLLLDLWRREQVDTATVRVDAAAPTGVYFVSHGEHGHAFDYLRAGSAASR EEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHCCCCCCC YAPGDLPLEALAAARVLHLSGISFAISASACDAAFAAIDQARAHGVQVSFDTNLRLKLWP CCCCCCCHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCEEEEECCCEEEEEEC LARARAVMLEALRRTDICLPSWDDVTVLTGLDERDAIVDALLDCGPRVVALKLGRDGAYV HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEEECCCCCEE ATRDARRLVPAFVVEALDATGAGDCFGGAFIARLVAGDDAFVAARYANAAAALSTRGYGA EECHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCCC VAPIPDARAVRALLDG CCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8760912; 9384377 [H]