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The map label for this gene is rimO [H]

Identifier: 238027205

GI number: 238027205

Start: 1740256

End: 1741638

Strand: Direct

Name: rimO [H]

Synonym: bglu_1g15910

Alternate gene names: 238027205

Gene position: 1740256-1741638 (Clockwise)

Preceding gene: 238027202

Following gene: 238027206

Centisome position: 44.55

GC content: 66.88

Gene sequence:

>1383_bases
ATGTCTCAGAACCAAACGTCGAGCCCCCGTATAGGTATAGTATCCCTCGGCTGCCCGAAAGCCCTTGTCGATTCCGAACA
GATCATCACCCAGCTGCGCGCCGAGGGCTACGAGATCTCCGGTACCTACGACGGCGCCGACCTCGTGGTGGTCAACACCT
GCGGTTTCATCGACGACGCCGTCCAGGAGAGCCTCGACGCGATCGGCGAGGCGCTGACCGAAAACGGCAAGGTGATCGTG
ACCGGCTGCCTCGGCGCGAAGAAGAGCGCCAGCGGCGCGGGCCTGATCGAGGAAGTTCATCCGAAGGTGCTGGCCGTCAC
CGGCCCGCACGCGCTCGGCGAGGTGATGCAGGCCGTCCACAGCCATCTGCCCAAGCCGCATGATCCGTTCGTCGATCTGG
TGCCGGCCGCCGGCATCAAGCTCACGCCTCGCCACTACGCGTATCTGAAGATTTCGGAGGGCTGCAACCATCGCTGCACG
TTCTGCATCATCCCGTCGATGCGCGGCGACCTGATCTCGCGTCCCGTCGCGGAGGTGATGCTGGAAGCGGAGAACCTGTT
CAAGTCGGGCGTGAAGGAACTGCTCGTGATCTCGCAGGACACGAGCGCCTACGGGGTCGACGTGAAATACCGCACGGGCT
TCTGGAACGGCCGCCCGCTCAAGACGCGCATGACGGAGCTGGTGGCGGCGCTCGGCGAGCTGGCCGCGCAATACGGCGCC
TGGGTGCGCCTGCATTATGTCTACCCGTATCCGCACGTCGACGAGATCATCCCGCTGATGGCCGAGGGCGCCTACCGCGG
CCACGTGCTGCCGTATCTGGACGTGCCGTTCCAGCACGCGGACCCGGACGTGCTCAAGCGCATGCGCCGCCCGGCGAACG
CCGAAAAGGTGCTGGACCGCGTGCGCAAGTGGCGCGAGGTCTGTCCGGACCTGACGATCCGCAGCACCTTCATCGCCGGC
TTCCCGGGCGAGACGGAGGCGCAGTTCGAGACGCTGCTCGACTTCATCCGCGAGGCCGAACTCGATCGCGTCGGCTGCTT
CGCCTATTCGCCGGTGGAAGGCGCCACGGCGAACGAACTCGACGGCGCGTTGCCGGACGAGGTTCGCGAGGCGCGCCGCG
CGCGCTTCATGGAGGTGGCCGAGGAAGTGTCGGCCGCCCGCATCGAGCGCAAGATCGGCCAGACGCTGAAGGTGCTGATC
GACGAGGTGAACGCCGAGGGCGGGATCGGCCGCACGGCCGCCGACGCGCCGGAAATCGACGGCGTGGTCTACGTGGAGCC
GGCGCCGAAGGGCGCGAAGCGCTACAAGGTCGGCGATTTCGTATCGGTGGCGATCACCGGGGCGGACGGCCACGACCTGT
GGGGCGAGGTCGAAGCGGCATGA

Upstream 100 bases:

>100_bases
CTCGAGTTGCCGATCGACGCTGCCGCCAGCCGCTTGTTTTGGATCGCTGAACCGTAAATAGCTGTAAACTCTCGCTTTTG
CCGCCATTCCCCACTCCAAG

Downstream 100 bases:

>100_bases
CACGGACCATACCGGCGTCGGGCCAGCCGGCGCGGCCCGAGATCCTCGCGTTCGGCGAGGCGATGGTCGAATTCAACCAG
TCCCAGCCGGGCTCGCCGCA

Product: ribosomal protein S12 methylthiotransferase

Products: NA

Alternate protein names: S12 MTTase; S12 methylthiotransferase; Ribosome maturation factor RimO [H]

Number of amino acids: Translated: 460; Mature: 459

Protein sequence:

>460_residues
MSQNQTSSPRIGIVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDDAVQESLDAIGEALTENGKVIV
TGCLGAKKSASGAGLIEEVHPKVLAVTGPHALGEVMQAVHSHLPKPHDPFVDLVPAAGIKLTPRHYAYLKISEGCNHRCT
FCIIPSMRGDLISRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPLKTRMTELVAALGELAAQYGA
WVRLHYVYPYPHVDEIIPLMAEGAYRGHVLPYLDVPFQHADPDVLKRMRRPANAEKVLDRVRKWREVCPDLTIRSTFIAG
FPGETEAQFETLLDFIREAELDRVGCFAYSPVEGATANELDGALPDEVREARRARFMEVAEEVSAARIERKIGQTLKVLI
DEVNAEGGIGRTAADAPEIDGVVYVEPAPKGAKRYKVGDFVSVAITGADGHDLWGEVEAA

Sequences:

>Translated_460_residues
MSQNQTSSPRIGIVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDDAVQESLDAIGEALTENGKVIV
TGCLGAKKSASGAGLIEEVHPKVLAVTGPHALGEVMQAVHSHLPKPHDPFVDLVPAAGIKLTPRHYAYLKISEGCNHRCT
FCIIPSMRGDLISRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPLKTRMTELVAALGELAAQYGA
WVRLHYVYPYPHVDEIIPLMAEGAYRGHVLPYLDVPFQHADPDVLKRMRRPANAEKVLDRVRKWREVCPDLTIRSTFIAG
FPGETEAQFETLLDFIREAELDRVGCFAYSPVEGATANELDGALPDEVREARRARFMEVAEEVSAARIERKIGQTLKVLI
DEVNAEGGIGRTAADAPEIDGVVYVEPAPKGAKRYKVGDFVSVAITGADGHDLWGEVEAA
>Mature_459_residues
SQNQTSSPRIGIVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDDAVQESLDAIGEALTENGKVIVT
GCLGAKKSASGAGLIEEVHPKVLAVTGPHALGEVMQAVHSHLPKPHDPFVDLVPAAGIKLTPRHYAYLKISEGCNHRCTF
CIIPSMRGDLISRPVAEVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPLKTRMTELVAALGELAAQYGAW
VRLHYVYPYPHVDEIIPLMAEGAYRGHVLPYLDVPFQHADPDVLKRMRRPANAEKVLDRVRKWREVCPDLTIRSTFIAGF
PGETEAQFETLLDFIREAELDRVGCFAYSPVEGATANELDGALPDEVREARRARFMEVAEEVSAARIERKIGQTLKVLID
EVNAEGGIGRTAADAPEIDGVVYVEPAPKGAKRYKVGDFVSVAITGADGHDLWGEVEAA

Specific function: Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 [H]

COG id: COG0621

COG function: function code J; 2-methylthioadenine synthetase

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TRAM domain [H]

Homologues:

Organism=Homo sapiens, GI93277076, Length=415, Percent_Identity=27.4698795180723, Blast_Score=135, Evalue=9e-32,
Organism=Homo sapiens, GI28872784, Length=488, Percent_Identity=24.5901639344262, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI28872782, Length=488, Percent_Identity=24.5901639344262, Blast_Score=123, Evalue=3e-28,
Organism=Escherichia coli, GI1787057, Length=451, Percent_Identity=62.9711751662971, Blast_Score=601, Evalue=1e-173,
Organism=Escherichia coli, GI1786882, Length=466, Percent_Identity=27.0386266094421, Blast_Score=146, Evalue=2e-36,
Organism=Caenorhabditis elegans, GI17553146, Length=486, Percent_Identity=24.2798353909465, Blast_Score=105, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI71996771, Length=269, Percent_Identity=28.2527881040892, Blast_Score=92, Evalue=6e-19,
Organism=Drosophila melanogaster, GI21356207, Length=474, Percent_Identity=27.0042194092827, Blast_Score=140, Evalue=3e-33,
Organism=Drosophila melanogaster, GI19922432, Length=405, Percent_Identity=27.6543209876543, Blast_Score=114, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR005839
- InterPro:   IPR020612
- InterPro:   IPR013848
- InterPro:   IPR012340
- InterPro:   IPR007197
- InterPro:   IPR005840
- InterPro:   IPR002792 [H]

Pfam domain/function: PF04055 Radical_SAM; PF01938 TRAM; PF00919 UPF0004 [H]

EC number: NA

Molecular weight: Translated: 50090; Mature: 49958

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS50926 TRAM ; PS01278 UPF0004

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQNQTSSPRIGIVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDDA
CCCCCCCCCCEEEEECCCCHHHHCHHHHHHHHHHCCEEEECCCCCCCEEEEECCCCHHHH
VQESLDAIGEALTENGKVIVTGCLGAKKSASGAGLIEEVHPKVLAVTGPHALGEVMQAVH
HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHCCCCEEEEECCHHHHHHHHHHH
SHLPKPHDPFVDLVPAAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLISRPVAEVM
HHCCCCCCCCHHHHCCCCEEECCCEEEEEEECCCCCCCEEEEEECCCCCHHHHCHHHHHH
LEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPLKTRMTELVAALGELAAQYGA
HHHHHHHHHHHHHEEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCC
WVRLHYVYPYPHVDEIIPLMAEGAYRGHVLPYLDVPFQHADPDVLKRMRRPANAEKVLDR
EEEEEEECCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHCCCCHHHHHHH
VRKWREVCPDLTIRSTFIAGFPGETEAQFETLLDFIREAELDRVGCFAYSPVEGATANEL
HHHHHHHCCCCEEEHHEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHC
DGALPDEVREARRARFMEVAEEVSAARIERKIGQTLKVLIDEVNAEGGIGRTAADAPEID
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
GVVYVEPAPKGAKRYKVGDFVSVAITGADGHDLWGEVEAA
CEEEECCCCCCCCCEECCCEEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
SQNQTSSPRIGIVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDDA
CCCCCCCCCEEEEECCCCHHHHCHHHHHHHHHHCCEEEECCCCCCCEEEEECCCCHHHH
VQESLDAIGEALTENGKVIVTGCLGAKKSASGAGLIEEVHPKVLAVTGPHALGEVMQAVH
HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHCCCCEEEEECCHHHHHHHHHHH
SHLPKPHDPFVDLVPAAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLISRPVAEVM
HHCCCCCCCCHHHHCCCCEEECCCEEEEEEECCCCCCCEEEEEECCCCCHHHHCHHHHHH
LEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGRPLKTRMTELVAALGELAAQYGA
HHHHHHHHHHHHHEEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCC
WVRLHYVYPYPHVDEIIPLMAEGAYRGHVLPYLDVPFQHADPDVLKRMRRPANAEKVLDR
EEEEEEECCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHCCCCHHHHHHH
VRKWREVCPDLTIRSTFIAGFPGETEAQFETLLDFIREAELDRVGCFAYSPVEGATANEL
HHHHHHHCCCCEEEHHEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHC
DGALPDEVREARRARFMEVAEEVSAARIERKIGQTLKVLIDEVNAEGGIGRTAADAPEID
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
GVVYVEPAPKGAKRYKVGDFVSVAITGADGHDLWGEVEAA
CEEEECCCCCCCCCEECCCEEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA