Definition Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence.
Accession NC_012724
Length 3,906,507

Click here to switch to the map view.

The map label for this gene is yfiH [C]

Identifier: 238027091

GI number: 238027091

Start: 1619568

End: 1620431

Strand: Direct

Name: yfiH [C]

Synonym: bglu_1g14700

Alternate gene names: 238027091

Gene position: 1619568-1620431 (Clockwise)

Preceding gene: 238027090

Following gene: 238027092

Centisome position: 41.46

GC content: 76.74

Gene sequence:

>864_bases
ATGGCGAGCTCCCTGTTTCCCGAGCTGAGCTGGAACGATTGCCTGCGGCCCGACTGGCGCGTGGCGCCGCGCGTGCGCGC
GCTGGTGTCGACCCGCAACGGCGGCCTCAGCGCTGCTCCCTACGGCCGCTGGTCGGCCGCCGGCGGCGACGCGCCGGGGG
GCCTGAATCTCGGCCGTCACACCGGTGACGAGCCGGCCGCCGTCGAGGCCAACCGCGCGCGCCTGCTGGCGTTGACGGGC
CAGCCGCGCGCCGCCTGGCTGGAACAGGTGCACGGCACCGAGGTCGTGCGCGCCGACGCGGTGCTGGCCCGCGCAGACGA
TCCGACCGCCGACCCGGCCGCGGCCGGGGTGCGCGCCGACGCGAGCGTGACCGACCTGCCGGGCGCGGTCTGCGTGGTGA
TGGTGGCCGACTGCCTGCCGGTGCTGCTGTGCGATCCGGACGGCCGCGCGGTCGGGGCCGCGCACGCGGGCTGGCGCGGC
CTGGCGGCCGGCATCCTCGAGGCCGCGGCGTGCCAGGTGGCGGCGCTGGCCGGTGTCGAGACGAGCCGGCTGCGGGCCTA
CCTGGGGCCGGCGATCGGGCCGGCCGCGTTCGAGGTCGGCGCCGACGTGCGGACCGCGTTCGCCGAGGCCGCGACGAGCG
CCGAGCGCGAGGCGAGCGCGCGCGCGTTCGTCGCCGTCGACGGTTCACCCGGCAAATACCACGCCGATCTCTACGCGCTC
GCGCGACTGCGCGCGGCGCGGCTCGGCATCACGGAGGTGGCGGGCGGCGGCGCTTGCACCGTCACCGAGCGCGAGCGCTA
TTACTCGTATCGCCGCGATCGCGTGACGGGCCGGATGGCCGCGATGATCTGGATCGATGCCTGA

Upstream 100 bases:

>100_bases
CGAGGAGGCCGGCTTCGATGGCGACGATTACGACGATGACGATTACGACGGCGAGATCTTCTACGACGAGATGCCGCACG
ACGATCACGACGAGGACTGA

Downstream 100 bases:

>100_bases
GGCGAATAGCATGACGCGCCGTTGCGGATTGCTGGATGGCGGCGGGATTCGTTGCGGAGGGTGATCCGAACCGATGCGCA
GCGCGGCGAAACCTGTCGGC

Product: multicopper polyphenol oxidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MASSLFPELSWNDCLRPDWRVAPRVRALVSTRNGGLSAAPYGRWSAAGGDAPGGLNLGRHTGDEPAAVEANRARLLALTG
QPRAAWLEQVHGTEVVRADAVLARADDPTADPAAAGVRADASVTDLPGAVCVVMVADCLPVLLCDPDGRAVGAAHAGWRG
LAAGILEAAACQVAALAGVETSRLRAYLGPAIGPAAFEVGADVRTAFAEAATSAEREASARAFVAVDGSPGKYHADLYAL
ARLRAARLGITEVAGGGACTVTERERYYSYRRDRVTGRMAAMIWIDA

Sequences:

>Translated_287_residues
MASSLFPELSWNDCLRPDWRVAPRVRALVSTRNGGLSAAPYGRWSAAGGDAPGGLNLGRHTGDEPAAVEANRARLLALTG
QPRAAWLEQVHGTEVVRADAVLARADDPTADPAAAGVRADASVTDLPGAVCVVMVADCLPVLLCDPDGRAVGAAHAGWRG
LAAGILEAAACQVAALAGVETSRLRAYLGPAIGPAAFEVGADVRTAFAEAATSAEREASARAFVAVDGSPGKYHADLYAL
ARLRAARLGITEVAGGGACTVTERERYYSYRRDRVTGRMAAMIWIDA
>Mature_286_residues
ASSLFPELSWNDCLRPDWRVAPRVRALVSTRNGGLSAAPYGRWSAAGGDAPGGLNLGRHTGDEPAAVEANRARLLALTGQ
PRAAWLEQVHGTEVVRADAVLARADDPTADPAAAGVRADASVTDLPGAVCVVMVADCLPVLLCDPDGRAVGAAHAGWRGL
AAGILEAAACQVAALAGVETSRLRAYLGPAIGPAAFEVGADVRTAFAEAATSAEREASARAFVAVDGSPGKYHADLYALA
RLRAARLGITEVAGGGACTVTERERYYSYRRDRVTGRMAAMIWIDA

Specific function: Unknown

COG id: COG1496

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0124 family [H]

Homologues:

Organism=Escherichia coli, GI1788945, Length=270, Percent_Identity=46.2962962962963, Blast_Score=209, Evalue=1e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003730
- InterPro:   IPR011324 [H]

Pfam domain/function: PF02578 Cu-oxidase_4 [H]

EC number: NA

Molecular weight: Translated: 29758; Mature: 29627

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASSLFPELSWNDCLRPDWRVAPRVRALVSTRNGGLSAAPYGRWSAAGGDAPGGLNLGRH
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TGDEPAAVEANRARLLALTGQPRAAWLEQVHGTEVVRADAVLARADDPTADPAAAGVRAD
CCCCCCEEECCCEEEEEEECCCHHHHHHHHCCCCEEEHHEEEEECCCCCCCCHHCCCCCC
ASVTDLPGAVCVVMVADCLPVLLCDPDGRAVGAAHAGWRGLAAGILEAAACQVAALAGVE
CCCCCCCHHHHHHHHHHCCEEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHCCC
TSRLRAYLGPAIGPAAFEVGADVRTAFAEAATSAEREASARAFVAVDGSPGKYHADLYAL
HHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHH
ARLRAARLGITEVAGGGACTVTERERYYSYRRDRVTGRMAAMIWIDA
HHHHHHHCCCEEECCCCEEEECHHHHHHHHHHHHHCCEEEEEEEEEC
>Mature Secondary Structure 
ASSLFPELSWNDCLRPDWRVAPRVRALVSTRNGGLSAAPYGRWSAAGGDAPGGLNLGRH
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TGDEPAAVEANRARLLALTGQPRAAWLEQVHGTEVVRADAVLARADDPTADPAAAGVRAD
CCCCCCEEECCCEEEEEEECCCHHHHHHHHCCCCEEEHHEEEEECCCCCCCCHHCCCCCC
ASVTDLPGAVCVVMVADCLPVLLCDPDGRAVGAAHAGWRGLAAGILEAAACQVAALAGVE
CCCCCCCHHHHHHHHHHCCEEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHCCC
TSRLRAYLGPAIGPAAFEVGADVRTAFAEAATSAEREASARAFVAVDGSPGKYHADLYAL
HHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHH
ARLRAARLGITEVAGGGACTVTERERYYSYRRDRVTGRMAAMIWIDA
HHHHHHHCCCEEECCCCEEEECHHHHHHHHHHHHHCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043; 8097014 [H]