| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is yfiH [C]
Identifier: 238027091
GI number: 238027091
Start: 1619568
End: 1620431
Strand: Direct
Name: yfiH [C]
Synonym: bglu_1g14700
Alternate gene names: 238027091
Gene position: 1619568-1620431 (Clockwise)
Preceding gene: 238027090
Following gene: 238027092
Centisome position: 41.46
GC content: 76.74
Gene sequence:
>864_bases ATGGCGAGCTCCCTGTTTCCCGAGCTGAGCTGGAACGATTGCCTGCGGCCCGACTGGCGCGTGGCGCCGCGCGTGCGCGC GCTGGTGTCGACCCGCAACGGCGGCCTCAGCGCTGCTCCCTACGGCCGCTGGTCGGCCGCCGGCGGCGACGCGCCGGGGG GCCTGAATCTCGGCCGTCACACCGGTGACGAGCCGGCCGCCGTCGAGGCCAACCGCGCGCGCCTGCTGGCGTTGACGGGC CAGCCGCGCGCCGCCTGGCTGGAACAGGTGCACGGCACCGAGGTCGTGCGCGCCGACGCGGTGCTGGCCCGCGCAGACGA TCCGACCGCCGACCCGGCCGCGGCCGGGGTGCGCGCCGACGCGAGCGTGACCGACCTGCCGGGCGCGGTCTGCGTGGTGA TGGTGGCCGACTGCCTGCCGGTGCTGCTGTGCGATCCGGACGGCCGCGCGGTCGGGGCCGCGCACGCGGGCTGGCGCGGC CTGGCGGCCGGCATCCTCGAGGCCGCGGCGTGCCAGGTGGCGGCGCTGGCCGGTGTCGAGACGAGCCGGCTGCGGGCCTA CCTGGGGCCGGCGATCGGGCCGGCCGCGTTCGAGGTCGGCGCCGACGTGCGGACCGCGTTCGCCGAGGCCGCGACGAGCG CCGAGCGCGAGGCGAGCGCGCGCGCGTTCGTCGCCGTCGACGGTTCACCCGGCAAATACCACGCCGATCTCTACGCGCTC GCGCGACTGCGCGCGGCGCGGCTCGGCATCACGGAGGTGGCGGGCGGCGGCGCTTGCACCGTCACCGAGCGCGAGCGCTA TTACTCGTATCGCCGCGATCGCGTGACGGGCCGGATGGCCGCGATGATCTGGATCGATGCCTGA
Upstream 100 bases:
>100_bases CGAGGAGGCCGGCTTCGATGGCGACGATTACGACGATGACGATTACGACGGCGAGATCTTCTACGACGAGATGCCGCACG ACGATCACGACGAGGACTGA
Downstream 100 bases:
>100_bases GGCGAATAGCATGACGCGCCGTTGCGGATTGCTGGATGGCGGCGGGATTCGTTGCGGAGGGTGATCCGAACCGATGCGCA GCGCGGCGAAACCTGTCGGC
Product: multicopper polyphenol oxidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 287; Mature: 286
Protein sequence:
>287_residues MASSLFPELSWNDCLRPDWRVAPRVRALVSTRNGGLSAAPYGRWSAAGGDAPGGLNLGRHTGDEPAAVEANRARLLALTG QPRAAWLEQVHGTEVVRADAVLARADDPTADPAAAGVRADASVTDLPGAVCVVMVADCLPVLLCDPDGRAVGAAHAGWRG LAAGILEAAACQVAALAGVETSRLRAYLGPAIGPAAFEVGADVRTAFAEAATSAEREASARAFVAVDGSPGKYHADLYAL ARLRAARLGITEVAGGGACTVTERERYYSYRRDRVTGRMAAMIWIDA
Sequences:
>Translated_287_residues MASSLFPELSWNDCLRPDWRVAPRVRALVSTRNGGLSAAPYGRWSAAGGDAPGGLNLGRHTGDEPAAVEANRARLLALTG QPRAAWLEQVHGTEVVRADAVLARADDPTADPAAAGVRADASVTDLPGAVCVVMVADCLPVLLCDPDGRAVGAAHAGWRG LAAGILEAAACQVAALAGVETSRLRAYLGPAIGPAAFEVGADVRTAFAEAATSAEREASARAFVAVDGSPGKYHADLYAL ARLRAARLGITEVAGGGACTVTERERYYSYRRDRVTGRMAAMIWIDA >Mature_286_residues ASSLFPELSWNDCLRPDWRVAPRVRALVSTRNGGLSAAPYGRWSAAGGDAPGGLNLGRHTGDEPAAVEANRARLLALTGQ PRAAWLEQVHGTEVVRADAVLARADDPTADPAAAGVRADASVTDLPGAVCVVMVADCLPVLLCDPDGRAVGAAHAGWRGL AAGILEAAACQVAALAGVETSRLRAYLGPAIGPAAFEVGADVRTAFAEAATSAEREASARAFVAVDGSPGKYHADLYALA RLRAARLGITEVAGGGACTVTERERYYSYRRDRVTGRMAAMIWIDA
Specific function: Unknown
COG id: COG1496
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0124 family [H]
Homologues:
Organism=Escherichia coli, GI1788945, Length=270, Percent_Identity=46.2962962962963, Blast_Score=209, Evalue=1e-55,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003730 - InterPro: IPR011324 [H]
Pfam domain/function: PF02578 Cu-oxidase_4 [H]
EC number: NA
Molecular weight: Translated: 29758; Mature: 29627
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASSLFPELSWNDCLRPDWRVAPRVRALVSTRNGGLSAAPYGRWSAAGGDAPGGLNLGRH CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TGDEPAAVEANRARLLALTGQPRAAWLEQVHGTEVVRADAVLARADDPTADPAAAGVRAD CCCCCCEEECCCEEEEEEECCCHHHHHHHHCCCCEEEHHEEEEECCCCCCCCHHCCCCCC ASVTDLPGAVCVVMVADCLPVLLCDPDGRAVGAAHAGWRGLAAGILEAAACQVAALAGVE CCCCCCCHHHHHHHHHHCCEEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHCCC TSRLRAYLGPAIGPAAFEVGADVRTAFAEAATSAEREASARAFVAVDGSPGKYHADLYAL HHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHH ARLRAARLGITEVAGGGACTVTERERYYSYRRDRVTGRMAAMIWIDA HHHHHHHCCCEEECCCCEEEECHHHHHHHHHHHHHCCEEEEEEEEEC >Mature Secondary Structure ASSLFPELSWNDCLRPDWRVAPRVRALVSTRNGGLSAAPYGRWSAAGGDAPGGLNLGRH CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TGDEPAAVEANRARLLALTGQPRAAWLEQVHGTEVVRADAVLARADDPTADPAAAGVRAD CCCCCCEEECCCEEEEEEECCCHHHHHHHHCCCCEEEHHEEEEECCCCCCCCHHCCCCCC ASVTDLPGAVCVVMVADCLPVLLCDPDGRAVGAAHAGWRGLAAGILEAAACQVAALAGVE CCCCCCCHHHHHHHHHHCCEEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHCCC TSRLRAYLGPAIGPAAFEVGADVRTAFAEAATSAEREASARAFVAVDGSPGKYHADLYAL HHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHH ARLRAARLGITEVAGGGACTVTERERYYSYRRDRVTGRMAAMIWIDA HHHHHHHCCCEEECCCCEEEECHHHHHHHHHHHHHCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043; 8097014 [H]