| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is yoaA [C]
Identifier: 238027088
GI number: 238027088
Start: 1615089
End: 1617350
Strand: Direct
Name: yoaA [C]
Synonym: bglu_1g14670
Alternate gene names: 238027088
Gene position: 1615089-1617350 (Clockwise)
Preceding gene: 238027087
Following gene: 238027090
Centisome position: 41.34
GC content: 70.82
Gene sequence:
>2262_bases TTGAATTCTTCGTTAGAAGCCACCGCCGACGCGCGGCGCGACGAACCGTCCGCCGCGGCGTCGCGCACGTCCGCGCCGAA CGGCCTGGCGATGCCGAGCCGCAAGCGCGTGGCCGAACTCGACGCGATCTTCGGTGAAGGTGGCCTGTTCTCGCGCGCGC TCGACGGCTACCGTCCGCGCGCCTCCCAGATCGACATGGCGCGTGCCGTCGCGGCCGCGATGGAGGCGTCCGCGCGCAAG CTGCCCGAGCCGGAGATGTTCGACAGCCGCAAGCGCCCGGCACGCAAGCTGCAGGGCGACGCCGCGGCCGGCGAGGACGC GCGCGGCCCGGCCGCTGGCGCCGAGGCCGACGACGGCGCCGACAACACGCTGATCGTCGAGGCCGGCACCGGCACCGGCA AGACCTACGCCTATCTGGTGCCGGCCATGCTGTGGGGCGGCAAGGTGATCGTCTCGACCGGCACCAAGCACCTGCAGGAC CAGCTGTTCCAGCGCGACGTGCCGACCGTGCGCGATGCGCTGGCCGTGCCCGTCACGGTCGCGATGCTGAAGGGGCGCGC CAACTACCTCTGCCACTACTACCTGCAGCGCACGGCCGACAACGGCCGCCTGCCGACGCGGCAGGACACGGCCTACCTGC AGGAAATCGTCCGCTTCGCGAAGATCACGCGCAGCGGCGACAAGGCCGAATTGGCGAGCGTGCCGGAAACCTCGCCGGTC TGGTCGATGGTCACCTCGACGCGCGACAACTGTCTGGGCCAGGAGTGCCCGCACTACAAGGAATGCTTCGTGATGCAGGC GCGCCGCGAGGCGCAGCAGGCCGACGTGGTGGTGGTCAACCACCATCTGTTCTTCGCCGACATCATGTTGCGCGACACCG GCATGGCCGAACTGCTGCCGAGCGCGAACACCATCATCTTCGACGAGGCGCACCAGCTGCCGGAGACGGCCACGCTGTTC TTCGGCGAGACGCTCTCGACCACGCAGATTCTCGAGCTCGCGCGCGACGCCGTCGTGGAAGGGCTCGCGCATGCGCGCGA TGCAGTGGAATGGGTCAAGCTCGGCGGCGCGCTCGAACGTGCCGCGCGCGACGTGCGGCTCGCGTTCGCGGACAGCGGCA TCGTGCGAATGTCGCTCGCGCAGCTCGGCGACGATCATCCGCTGTTCGGTGCGCTCGACGACGTCGACGCGGCGCTCGAC GCGCTCGCCACGGCGCTGGCCGGCCAGTCGGAGCGGGCCGAGTCGATCGGCGCGTGCCTGCGTCGCGCGCGCGAACTGCA GGGCATCCTGGCCGGCTGGGTCGCACCGGAGGCGGCTGCGGCGCAGGCGGCCAGGGAGGCGACAGCGGCGCCCGAGGGCG AGGCCGCCGCGAAACCGCAGGACGATCCGGGCGAGAAGGTGCGCTGGGTCGAGGTGTTCTCGCAGACCGTGCAGTTGCAC GAGACGCCGCTGTCGGTCGCGCCGATCTTCGCGAAGCAGCGCGCCGGCGTGCCGCGTGCTTGGATCTTCACGTCGGCGAC GCTGTCGGTGCGCGGCGACTTCAGCCATTACGCGGCGCAGATGGGCCTCAGCTCGCGCCGCTCGATGACGCTGCCGAGCC CCTTCGACTATCCCGAGCAGGGCTTGCTCTACGTGCCGCGCGGCCTGCCGCAACCGTCGTCGCCAGCCTTCACCGACGCG GTGTTCGAGGCGGCGCTGCCGGCCATCGAGGCCTCGGGCGGCGGCGTGTTCATGCTCTGCACCACGTTGCGCGCGGTCGA TCGGATCGCCGCGAAGCTGCGCGAGACGATCGAGGCGCGCGGCTGGAACCTGCCGCTGCTGGTGCAGGGCGACGCGAGCC GCACCGAGCTGCTCGACCGCTTCCGCGCCTACGGCAACGCGATCCTGGTCGGCAGCCAGAGCTTCTGGGAAGGCGTCGAC GTGCGCGGCGATGCGCTGTCGCTGGTCGTGATCGACAAGCTGCCGTTCGCGCCGCCCGACGATCCGGTGCTGGCGGCTCG GCTCGACGCGCTGACCAGGAAGGGCTTGAGTCCGTTCGCGGTCCACCAGCTGCCGCAGGCCGTGATTACGCTGAAGCAGG GCGCGGGCCGGCTGATCCGCGCCGAAACCGATCGCGGCGTGCTGATGATCTGCGACACGCGGCTCGTCGACAAGCCATAC GGGCGCCGCATCTGGCAGAGCCTGCCGCCGTTCAAGCGCACGCGCGAGATCGAGGTGGTGCGCGAGTTCTTCGAGGAGGG TGGGCGCGGAATCCGTGCCTGA
Upstream 100 bases:
>100_bases ATCATGCTGCAGTCGCAGCTCGAACCGGATCAGCACGCCTGATCGCGGGCCTGGCAGGCGCCGGGGCCGGGTCGGGCACC GGACATAGGAACCGCTTGCC
Downstream 100 bases:
>100_bases CGGCGCGAGCGGCTTGGCGTGACGCCCAGCAAAAGCCCAGTAAAAAAACCGGCCGAGGCCGGTTTTTTGATGCGCCCGAC GCGGCGGGCAGGGCGCGCGG
Product: putative ATP-dependent helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 753; Mature: 753
Protein sequence:
>753_residues MNSSLEATADARRDEPSAAASRTSAPNGLAMPSRKRVAELDAIFGEGGLFSRALDGYRPRASQIDMARAVAAAMEASARK LPEPEMFDSRKRPARKLQGDAAAGEDARGPAAGAEADDGADNTLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTKHLQD QLFQRDVPTVRDALAVPVTVAMLKGRANYLCHYYLQRTADNGRLPTRQDTAYLQEIVRFAKITRSGDKAELASVPETSPV WSMVTSTRDNCLGQECPHYKECFVMQARREAQQADVVVVNHHLFFADIMLRDTGMAELLPSANTIIFDEAHQLPETATLF FGETLSTTQILELARDAVVEGLAHARDAVEWVKLGGALERAARDVRLAFADSGIVRMSLAQLGDDHPLFGALDDVDAALD ALATALAGQSERAESIGACLRRARELQGILAGWVAPEAAAAQAAREATAAPEGEAAAKPQDDPGEKVRWVEVFSQTVQLH ETPLSVAPIFAKQRAGVPRAWIFTSATLSVRGDFSHYAAQMGLSSRRSMTLPSPFDYPEQGLLYVPRGLPQPSSPAFTDA VFEAALPAIEASGGGVFMLCTTLRAVDRIAAKLRETIEARGWNLPLLVQGDASRTELLDRFRAYGNAILVGSQSFWEGVD VRGDALSLVVIDKLPFAPPDDPVLAARLDALTRKGLSPFAVHQLPQAVITLKQGAGRLIRAETDRGVLMICDTRLVDKPY GRRIWQSLPPFKRTREIEVVREFFEEGGRGIRA
Sequences:
>Translated_753_residues MNSSLEATADARRDEPSAAASRTSAPNGLAMPSRKRVAELDAIFGEGGLFSRALDGYRPRASQIDMARAVAAAMEASARK LPEPEMFDSRKRPARKLQGDAAAGEDARGPAAGAEADDGADNTLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTKHLQD QLFQRDVPTVRDALAVPVTVAMLKGRANYLCHYYLQRTADNGRLPTRQDTAYLQEIVRFAKITRSGDKAELASVPETSPV WSMVTSTRDNCLGQECPHYKECFVMQARREAQQADVVVVNHHLFFADIMLRDTGMAELLPSANTIIFDEAHQLPETATLF FGETLSTTQILELARDAVVEGLAHARDAVEWVKLGGALERAARDVRLAFADSGIVRMSLAQLGDDHPLFGALDDVDAALD ALATALAGQSERAESIGACLRRARELQGILAGWVAPEAAAAQAAREATAAPEGEAAAKPQDDPGEKVRWVEVFSQTVQLH ETPLSVAPIFAKQRAGVPRAWIFTSATLSVRGDFSHYAAQMGLSSRRSMTLPSPFDYPEQGLLYVPRGLPQPSSPAFTDA VFEAALPAIEASGGGVFMLCTTLRAVDRIAAKLRETIEARGWNLPLLVQGDASRTELLDRFRAYGNAILVGSQSFWEGVD VRGDALSLVVIDKLPFAPPDDPVLAARLDALTRKGLSPFAVHQLPQAVITLKQGAGRLIRAETDRGVLMICDTRLVDKPY GRRIWQSLPPFKRTREIEVVREFFEEGGRGIRA >Mature_753_residues MNSSLEATADARRDEPSAAASRTSAPNGLAMPSRKRVAELDAIFGEGGLFSRALDGYRPRASQIDMARAVAAAMEASARK LPEPEMFDSRKRPARKLQGDAAAGEDARGPAAGAEADDGADNTLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTKHLQD QLFQRDVPTVRDALAVPVTVAMLKGRANYLCHYYLQRTADNGRLPTRQDTAYLQEIVRFAKITRSGDKAELASVPETSPV WSMVTSTRDNCLGQECPHYKECFVMQARREAQQADVVVVNHHLFFADIMLRDTGMAELLPSANTIIFDEAHQLPETATLF FGETLSTTQILELARDAVVEGLAHARDAVEWVKLGGALERAARDVRLAFADSGIVRMSLAQLGDDHPLFGALDDVDAALD ALATALAGQSERAESIGACLRRARELQGILAGWVAPEAAAAQAAREATAAPEGEAAAKPQDDPGEKVRWVEVFSQTVQLH ETPLSVAPIFAKQRAGVPRAWIFTSATLSVRGDFSHYAAQMGLSSRRSMTLPSPFDYPEQGLLYVPRGLPQPSSPAFTDA VFEAALPAIEASGGGVFMLCTTLRAVDRIAAKLRETIEARGWNLPLLVQGDASRTELLDRFRAYGNAILVGSQSFWEGVD VRGDALSLVVIDKLPFAPPDDPVLAARLDALTRKGLSPFAVHQLPQAVITLKQGAGRLIRAETDRGVLMICDTRLVDKPY GRRIWQSLPPFKRTREIEVVREFFEEGGRGIRA
Specific function: Unknown
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1788110, Length=707, Percent_Identity=41.8670438472419, Blast_Score=497, Evalue=1e-141, Organism=Escherichia coli, GI1787018, Length=241, Percent_Identity=36.9294605809129, Blast_Score=120, Evalue=2e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR001650 - InterPro: IPR006935 [H]
Pfam domain/function: PF04851 ResIII [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 81504; Mature: 81504
Theoretical pI: Translated: 5.90; Mature: 5.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSSLEATADARRDEPSAAASRTSAPNGLAMPSRKRVAELDAIFGEGGLFSRALDGYRPR CCCCCCCHHHHCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCC ASQIDMARAVAAAMEASARKLPEPEMFDSRKRPARKLQGDAAAGEDARGPAAGAEADDGA HHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC DNTLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTKHLQDQLFQRDVPTVRDALAVPVTV CCEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHH AMLKGRANYLCHYYLQRTADNGRLPTRQDTAYLQEIVRFAKITRSGDKAELASVPETSPV HHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHH WSMVTSTRDNCLGQECPHYKECFVMQARREAQQADVVVVNHHLFFADIMLRDTGMAELLP HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEECHHEEHHHHHHCCCHHHHCC SANTIIFDEAHQLPETATLFFGETLSTTQILELARDAVVEGLAHARDAVEWVKLGGALER CCCEEEECCHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AARDVRLAFADSGIVRMSLAQLGDDHPLFGALDDVDAALDALATALAGQSERAESIGACL HHHHHEEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH RRARELQGILAGWVAPEAAAAQAAREATAAPEGEAAAKPQDDPGEKVRWVEVFSQTVQLH HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH ETPLSVAPIFAKQRAGVPRAWIFTSATLSVRGDFSHYAAQMGLSSRRSMTLPSPFDYPEQ CCCCCHHHHHHHHHCCCCEEEEEEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCC GLLYVPRGLPQPSSPAFTDAVFEAALPAIEASGGGVFMLCTTLRAVDRIAAKLRETIEAR CEEECCCCCCCCCCCHHHHHHHHHHHCCEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHC GWNLPLLVQGDASRTELLDRFRAYGNAILVGSQSFWEGVDVRGDALSLVVIDKLPFAPPD CCCCCEEEECCCHHHHHHHHHHHCCCEEEECCHHHHCCCCCCCCEEEEEEEECCCCCCCC DPVLAARLDALTRKGLSPFAVHQLPQAVITLKQGAGRLIRAETDRGVLMICDTRLVDKPY CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCHHHCCCH GRRIWQSLPPFKRTREIEVVREFFEEGGRGIRA HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MNSSLEATADARRDEPSAAASRTSAPNGLAMPSRKRVAELDAIFGEGGLFSRALDGYRPR CCCCCCCHHHHCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCC ASQIDMARAVAAAMEASARKLPEPEMFDSRKRPARKLQGDAAAGEDARGPAAGAEADDGA HHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC DNTLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTKHLQDQLFQRDVPTVRDALAVPVTV CCEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHH AMLKGRANYLCHYYLQRTADNGRLPTRQDTAYLQEIVRFAKITRSGDKAELASVPETSPV HHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHH WSMVTSTRDNCLGQECPHYKECFVMQARREAQQADVVVVNHHLFFADIMLRDTGMAELLP HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEECHHEEHHHHHHCCCHHHHCC SANTIIFDEAHQLPETATLFFGETLSTTQILELARDAVVEGLAHARDAVEWVKLGGALER CCCEEEECCHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AARDVRLAFADSGIVRMSLAQLGDDHPLFGALDDVDAALDALATALAGQSERAESIGACL HHHHHEEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH RRARELQGILAGWVAPEAAAAQAAREATAAPEGEAAAKPQDDPGEKVRWVEVFSQTVQLH HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH ETPLSVAPIFAKQRAGVPRAWIFTSATLSVRGDFSHYAAQMGLSSRRSMTLPSPFDYPEQ CCCCCHHHHHHHHHCCCCEEEEEEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCC GLLYVPRGLPQPSSPAFTDAVFEAALPAIEASGGGVFMLCTTLRAVDRIAAKLRETIEAR CEEECCCCCCCCCCCHHHHHHHHHHHCCEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHC GWNLPLLVQGDASRTELLDRFRAYGNAILVGSQSFWEGVDVRGDALSLVVIDKLPFAPPD CCCCCEEEECCCHHHHHHHHHHHCCCEEEECCHHHHCCCCCCCCEEEEEEEECCCCCCCC DPVLAARLDALTRKGLSPFAVHQLPQAVITLKQGAGRLIRAETDRGVLMICDTRLVDKPY CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCHHHCCCH GRRIWQSLPPFKRTREIEVVREFFEEGGRGIRA HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]