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The map label for this gene is skp [H]

Identifier: 238026912

GI number: 238026912

Start: 1405617

End: 1406123

Strand: Direct

Name: skp [H]

Synonym: bglu_1g12820

Alternate gene names: 238026912

Gene position: 1405617-1406123 (Clockwise)

Preceding gene: 238026911

Following gene: 238026913

Centisome position: 35.98

GC content: 65.48

Gene sequence:

>507_bases
ATGATGTGCGTGCTGGCGCTGACGGCCGCGCTCGGCGCGACGGCCGCGCAGGCGCAGGACGTGGCGCGGATCGCGGCGGT
CAATTCCGACCGTATCCTCCGCGAGTCGGCGCCCGCCAAGGCGGCGCAGACCAAGCTCGAAGCCGAGTTCGCGAAGCGCG
ACAAGGATCTGCAGGACATGGCGGCCCGCCTGAAGACCTTGTCCGACTCGCTCGACAAGAACGGCCAGTCGATGTCGGCT
GCCGATCGCGCGCAGAAGCAGCGTGATCTGTCGCAGCTCGACACCGATTTCCAGCGCAAGCAGCGCGAGTTTCGCGAAGA
CCTGAACCAGCGCCGCAACGAGGAGCTCGCGGCGGTGCTGGACAAGGCCAACAAGGTGATCAAGCAGATCGCCGAGCAGC
AGAACTACGACCTGATCGTGCAGGAAGCGGTCTACGTCAGTCCGCGCATCGACATCACCGACAAGGTGCTGAAGGCGCTC
GCGTCGCCTTCCGGTTCGCTGAACTGA

Upstream 100 bases:

>100_bases
CAGAAATTCCAGTTCCAGATCGGCACGGCGTTCTGATCGGAACCGCAACACCAAACGCATCGAGAGGGTAATTTTGCTAA
CCGGTAAGTATTCGAAACGG

Downstream 100 bases:

>100_bases
CGGGGGTCGAACGCATGGCATTGACGCTCGAGGCACTCGCCAAACGTTTCGGTGGGGACATCGCCGGAGACCCGCAATGC
ACGGTGGGCGGCCTCGCGCC

Product: OmpH/HlpA family outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MMCVLALTAALGATAAQAQDVARIAAVNSDRILRESAPAKAAQTKLEAEFAKRDKDLQDMAARLKTLSDSLDKNGQSMSA
ADRAQKQRDLSQLDTDFQRKQREFREDLNQRRNEELAAVLDKANKVIKQIAEQQNYDLIVQEAVYVSPRIDITDKVLKAL
ASPSGSLN

Sequences:

>Translated_168_residues
MMCVLALTAALGATAAQAQDVARIAAVNSDRILRESAPAKAAQTKLEAEFAKRDKDLQDMAARLKTLSDSLDKNGQSMSA
ADRAQKQRDLSQLDTDFQRKQREFREDLNQRRNEELAAVLDKANKVIKQIAEQQNYDLIVQEAVYVSPRIDITDKVLKAL
ASPSGSLN
>Mature_168_residues
MMCVLALTAALGATAAQAQDVARIAAVNSDRILRESAPAKAAQTKLEAEFAKRDKDLQDMAARLKTLSDSLDKNGQSMSA
ADRAQKQRDLSQLDTDFQRKQREFREDLNQRRNEELAAVLDKANKVIKQIAEQQNYDLIVQEAVYVSPRIDITDKVLKAL
ASPSGSLN

Specific function: Molecular chaperone that interacts specifically with outer membrane proteins, thus maintaining the solubility of early folding intermediates during passage through the periplasm [H]

COG id: COG2825

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the skp family [H]

Homologues:

None

Paralogues:

None

Copy number: 580 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005632 [H]

Pfam domain/function: PF03938 OmpH [H]

EC number: NA

Molecular weight: Translated: 18573; Mature: 18573

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMCVLALTAALGATAAQAQDVARIAAVNSDRILRESAPAKAAQTKLEAEFAKRDKDLQDM
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
AARLKTLSDSLDKNGQSMSAADRAQKQRDLSQLDTDFQRKQREFREDLNQRRNEELAAVL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DKANKVIKQIAEQQNYDLIVQEAVYVSPRIDITDKVLKALASPSGSLN
HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MMCVLALTAALGATAAQAQDVARIAAVNSDRILRESAPAKAAQTKLEAEFAKRDKDLQDM
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
AARLKTLSDSLDKNGQSMSAADRAQKQRDLSQLDTDFQRKQREFREDLNQRRNEELAAVL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DKANKVIKQIAEQQNYDLIVQEAVYVSPRIDITDKVLKALASPSGSLN
HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12886019 [H]