Click here to switch to the map view.

The map label for this gene is yedQ [H]

Identifier: 238026719

GI number: 238026719

Start: 1175600

End: 1176325

Strand: Reverse

Name: yedQ [H]

Synonym: bglu_1g10760

Alternate gene names: 238026719

Gene position: 1176325-1175600 (Counterclockwise)

Preceding gene: 238026720

Following gene: 238026718

Centisome position: 30.11

GC content: 70.52

Gene sequence:

>726_bases
GTGACTTCGACGTCCTTGCCCAACGTGCATCCGGGCGCCGCGCCGGATCTCTTCGAGACCGAGAGCGCGGCGCTGGAGCG
GGCGCGCGCCACCCACCGCGCCACGGATGCCGACGCCGCGGCGTACCGCCAGTCGTTGGGGGAGCTCATCGAGCACTTCG
AGCGCCTGATGCGAGAAACGCGCCGGCTGATCGGGCGCAGCGACCGCGCCGAGCGCGAGATGCAGGCGCTCGCCAACCAG
TTGGCGCATCGCGCCTCGCATGACGCGCTGACCGGCGTGCTGAACCGCAGCGCCGTGATCGAGCGCACCGCCAAGACCCT
GCGCACCCGCAACGCCGCGATGGTGGTGCTCGACATCGACGAGTTCAAGCGCATCAACGACGATTTCGGTCATCCGACCG
GCGACGCGGTGATCCTCGGCGTGGTCGACTGCCTGCGCAGCATCGTCGTCGAGCGTGGCTTCATCGGGCGCGTCGGCGGC
GAGGAGTTCACGGTGATCCTGCCCGACTGCGAGGCCAGCGAGGCCGGCATGCTCGCCGAGCGGATGCGGCGCGCCATGAG
CGACTCGCTGGTGGTGCCGCCCGTCGACCGCGCGATCACGGCCAGCTTCGGCATCAGCATCAACGCCGCCGGCACCAGCT
TCGACACCGCCTACGGGATGGCCGACGAGGCGCTCTACCGCGCCAAGCGCGGCGGCCGCAACCGCGTGGAATTCGCCGAC
CAGTAA

Upstream 100 bases:

>100_bases
CGAGGAGGACGAGACGATCGCCGAATTCGGCGAGGAACTGAAGGCCGATTTCGACGCGATCGAGTTCAGCGACCGTCCCG
TCGCGCACTGAGGAAGGCCC

Downstream 100 bases:

>100_bases
GGCCGGGCCCCCGCGCCCGCGGGCGGCGCGCACGCGCCGCCGCGCACGGCCGCCCTCGCTCACCCGCCGCGGACGGCCAC
GCGCGCCGCCGGCCTCTCCC

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MTSTSLPNVHPGAAPDLFETESAALERARATHRATDADAAAYRQSLGELIEHFERLMRETRRLIGRSDRAEREMQALANQ
LAHRASHDALTGVLNRSAVIERTAKTLRTRNAAMVVLDIDEFKRINDDFGHPTGDAVILGVVDCLRSIVVERGFIGRVGG
EEFTVILPDCEASEAGMLAERMRRAMSDSLVVPPVDRAITASFGISINAAGTSFDTAYGMADEALYRAKRGGRNRVEFAD
Q

Sequences:

>Translated_241_residues
MTSTSLPNVHPGAAPDLFETESAALERARATHRATDADAAAYRQSLGELIEHFERLMRETRRLIGRSDRAEREMQALANQ
LAHRASHDALTGVLNRSAVIERTAKTLRTRNAAMVVLDIDEFKRINDDFGHPTGDAVILGVVDCLRSIVVERGFIGRVGG
EEFTVILPDCEASEAGMLAERMRRAMSDSLVVPPVDRAITASFGISINAAGTSFDTAYGMADEALYRAKRGGRNRVEFAD
Q
>Mature_240_residues
TSTSLPNVHPGAAPDLFETESAALERARATHRATDADAAAYRQSLGELIEHFERLMRETRRLIGRSDRAEREMQALANQL
AHRASHDALTGVLNRSAVIERTAKTLRTRNAAMVVLDIDEFKRINDDFGHPTGDAVILGVVDCLRSIVVERGFIGRVGGE
EFTVILPDCEASEAGMLAERMRRAMSDSLVVPPVDRAITASFGISINAAGTSFDTAYGMADEALYRAKRGGRNRVEFADQ

Specific function: Involves in the regulation of cellulose production [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=181, Percent_Identity=37.5690607734807, Blast_Score=103, Evalue=7e-24,
Organism=Escherichia coli, GI87081881, Length=169, Percent_Identity=35.5029585798817, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787262, Length=170, Percent_Identity=38.2352941176471, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787802, Length=170, Percent_Identity=32.9411764705882, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788381, Length=172, Percent_Identity=34.8837209302326, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI145693134, Length=212, Percent_Identity=31.6037735849057, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1786584, Length=167, Percent_Identity=32.3353293413174, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1787816, Length=165, Percent_Identity=32.1212121212121, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI87081977, Length=150, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1788085, Length=199, Percent_Identity=28.643216080402, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1788956, Length=193, Percent_Identity=29.0155440414508, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87081974, Length=153, Percent_Identity=29.4117647058824, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787056, Length=188, Percent_Identity=27.6595744680851, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1787541, Length=175, Percent_Identity=29.7142857142857, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 26357; Mature: 26226

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSTSLPNVHPGAAPDLFETESAALERARATHRATDADAAAYRQSLGELIEHFERLMRET
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RRLIGRSDRAEREMQALANQLAHRASHDALTGVLNRSAVIERTAKTLRTRNAAMVVLDID
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHH
EFKRINDDFGHPTGDAVILGVVDCLRSIVVERGFIGRVGGEEFTVILPDCEASEAGMLAE
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHH
RMRRAMSDSLVVPPVDRAITASFGISINAAGTSFDTAYGMADEALYRAKRGGRNRVEFAD
HHHHHHHCCCCCCCCCHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q
C
>Mature Secondary Structure 
TSTSLPNVHPGAAPDLFETESAALERARATHRATDADAAAYRQSLGELIEHFERLMRET
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RRLIGRSDRAEREMQALANQLAHRASHDALTGVLNRSAVIERTAKTLRTRNAAMVVLDID
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHH
EFKRINDDFGHPTGDAVILGVVDCLRSIVVERGFIGRVGGEEFTVILPDCEASEAGMLAE
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHH
RMRRAMSDSLVVPPVDRAITASFGISINAAGTSFDTAYGMADEALYRAKRGGRNRVEFAD
HHHHHHHCCCCCCCCCHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA