| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238026629
Identifier: 238026629
GI number: 238026629
Start: 1054070
End: 1054828
Strand: Reverse
Name: 238026629
Synonym: bglu_1g09810
Alternate gene names: NA
Gene position: 1054828-1054070 (Counterclockwise)
Preceding gene: 238026630
Following gene: 238026628
Centisome position: 27.0
GC content: 48.88
Gene sequence:
>759_bases TTGACCACCAATAAGATACCGAAAGCATTTCTTTCTTATTCGCACGATTCGCTAGACCATAAAAAATGGGTTCTCGACCT CGCAATTCGGCTTCGCAGTAATGGCGTGGAGTCAATCATCGACCAGTGGTCGCTGGGACCAGGGGATGATTTACCCCATT TCATGGAGCAAAACCTCGCTATCGCTGACCGCGTACTAATGATCTGCACCGAAAACTACGTCAAAAAGGCTAACACTGGC GCGGGCGGTGTCGGTTACGAGAAGATGATTGTCACTGCCGATCTTCTCAGGCGCATCGACTCGAACAAGGTCATCCCGCT AATCCGGCAGTCGGGCACTCACACTGTGCCAACCTTCCTACAATCGAAGTTGTACCTGGATTTCTCACGTCCGGATCAGA TGGAGCTCGCTTTCGATGATCTGATACGAGCCATTCATGGCGCTCCGCTGTATGTGGCCCCACCTGTATCGAACAATCCT TTCGTACCTGTGGCCGATACTCCTGCCACGAAGACCGGTGATGGTGTTTTAATAGCGATGAGAATAGTCGTGGCGCTGTT TGAGGCCAGTTCATCGAACTTTATTTCCTATCGAGACATCCTCAGAAAGGCGTCAATTTCACGGATCATGTTGGATATTT ATATCCAAGAAGCAATCGATCAAAAGCTTATCACCTGGCTCGAGTCGAGCAAGGAATACCTTAAACTTGAAAACAAAGGT AAGCACTACGCCATCCAGCACAAGCTGATCCGGAATTAA
Upstream 100 bases:
>100_bases TAGGCAGTCGTGAGCAAGTCTGGCTTGAGATGCTCTGGATCAGAGCCTCTGATGTAGCGCTGATCTACGAGAATTTTCCT ACAATAGTCGGAGCGGGAAT
Downstream 100 bases:
>100_bases GTTTTTAGTCGCTTCGTCAATGTCCGCTCTTGGTTGCGGCCGCTCGCCGTCACCAACAAACAAATGACGGCGCGCTTCGA GCGGTCTCGTTCCCGCCACC
Product: SEFIR domain-containing protein
Products: NA
Alternate protein names: SEFIR Domain Protein; Protein-Transmembrane Prediction; Sefir Domain-Containing Protein
Number of amino acids: Translated: 252; Mature: 251
Protein sequence:
>252_residues MTTNKIPKAFLSYSHDSLDHKKWVLDLAIRLRSNGVESIIDQWSLGPGDDLPHFMEQNLAIADRVLMICTENYVKKANTG AGGVGYEKMIVTADLLRRIDSNKVIPLIRQSGTHTVPTFLQSKLYLDFSRPDQMELAFDDLIRAIHGAPLYVAPPVSNNP FVPVADTPATKTGDGVLIAMRIVVALFEASSSNFISYRDILRKASISRIMLDIYIQEAIDQKLITWLESSKEYLKLENKG KHYAIQHKLIRN
Sequences:
>Translated_252_residues MTTNKIPKAFLSYSHDSLDHKKWVLDLAIRLRSNGVESIIDQWSLGPGDDLPHFMEQNLAIADRVLMICTENYVKKANTG AGGVGYEKMIVTADLLRRIDSNKVIPLIRQSGTHTVPTFLQSKLYLDFSRPDQMELAFDDLIRAIHGAPLYVAPPVSNNP FVPVADTPATKTGDGVLIAMRIVVALFEASSSNFISYRDILRKASISRIMLDIYIQEAIDQKLITWLESSKEYLKLENKG KHYAIQHKLIRN >Mature_251_residues TTNKIPKAFLSYSHDSLDHKKWVLDLAIRLRSNGVESIIDQWSLGPGDDLPHFMEQNLAIADRVLMICTENYVKKANTGA GGVGYEKMIVTADLLRRIDSNKVIPLIRQSGTHTVPTFLQSKLYLDFSRPDQMELAFDDLIRAIHGAPLYVAPPVSNNPF VPVADTPATKTGDGVLIAMRIVVALFEASSSNFISYRDILRKASISRIMLDIYIQEAIDQKLITWLESSKEYLKLENKGK HYAIQHKLIRN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28383; Mature: 28252
Theoretical pI: Translated: 8.86; Mature: 8.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTNKIPKAFLSYSHDSLDHKKWVLDLAIRLRSNGVESIIDQWSLGPGDDLPHFMEQNLA CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHCCHH IADRVLMICTENYVKKANTGAGGVGYEKMIVTADLLRRIDSNKVIPLIRQSGTHTVPTFL HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEHHHCCCCCHHHHHH QSKLYLDFSRPDQMELAFDDLIRAIHGAPLYVAPPVSNNPFVPVADTPATKTGDGVLIAM HHHEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCEEEECCCCCCCCCCCHHHHH RIVVALFEASSSNFISYRDILRKASISRIMLDIYIQEAIDQKLITWLESSKEYLKLENKG HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEECCCC KHYAIQHKLIRN CEEEEHHHHHCC >Mature Secondary Structure TTNKIPKAFLSYSHDSLDHKKWVLDLAIRLRSNGVESIIDQWSLGPGDDLPHFMEQNLA CCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHCCHH IADRVLMICTENYVKKANTGAGGVGYEKMIVTADLLRRIDSNKVIPLIRQSGTHTVPTFL HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEHHHCCCCCHHHHHH QSKLYLDFSRPDQMELAFDDLIRAIHGAPLYVAPPVSNNPFVPVADTPATKTGDGVLIAM HHHEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCEEEECCCCCCCCCCCHHHHH RIVVALFEASSSNFISYRDILRKASISRIMLDIYIQEAIDQKLITWLESSKEYLKLENKG HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEECCCC KHYAIQHKLIRN CEEEEHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA