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The map label for this gene is ihfB [H]

Identifier: 238026537

GI number: 238026537

Start: 959736

End: 960062

Strand: Direct

Name: ihfB [H]

Synonym: bglu_1g08810

Alternate gene names: 238026537

Gene position: 959736-960062 (Clockwise)

Preceding gene: 238026536

Following gene: 238026538

Centisome position: 24.57

GC content: 63.0

Gene sequence:

>327_bases
ATGACCAAATCCGAGTTGGTCGCCCAGTTGGCAACGCGATTTCCGCAGCTCGTCCTCAAGGATGCGGATTTCGCGGTGAA
AACGATGCTCGATGCGATGTCGGATGCACTGTCCAAGGGACATCGCATCGAGATCCGCGGCTTCGGAAGCTTCGGTCTCA
ACCGCCGTCCGGCCCGCGTGGGCCGCAACCCGAAATCGGGCGAGAAGGTGCAGGTACCCGAGAAGTACGTGCCGCACTTC
AAGCCCGGCAAGGAGTTGCGCGAACGCGTCGACGGCCGCGCCGGCGAACCGTTGAAGCACGACAGCGGCGGCGACGACGA
TCAGTGA

Upstream 100 bases:

>100_bases
GACAACAACTCGGCTGCGAGCGGCACGACGAACCTCGGCGCGCTGCTGAAGGCAAAGCTCGACGGCCAGAACCAGTAAGC
CCCGCGAGGTCTGCTGAAGT

Downstream 100 bases:

>100_bases
GCGTCACGTCGCCCGAAGCCGGCCTGCCGGCATGGCTGTGAAAAGCGCCCCTAGCGGGCGCTTTTTTATTGCCCGCGCGG
CCGCCGCGGTGCCGCGGCGG

Product: integration host factor subunit beta

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 108; Mature: 107

Protein sequence:

>108_residues
MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARVGRNPKSGEKVQVPEKYVPHF
KPGKELRERVDGRAGEPLKHDSGGDDDQ

Sequences:

>Translated_108_residues
MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARVGRNPKSGEKVQVPEKYVPHF
KPGKELRERVDGRAGEPLKHDSGGDDDQ
>Mature_107_residues
TKSELVAQLATRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARVGRNPKSGEKVQVPEKYVPHFK
PGKELRERVDGRAGEPLKHDSGGDDDQ

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=58.2417582417582, Blast_Score=110, Evalue=3e-26,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=1e-12,
Organism=Escherichia coli, GI1786644, Length=91, Percent_Identity=30.7692307692308, Blast_Score=61, Evalue=1e-11,
Organism=Escherichia coli, GI1788005, Length=92, Percent_Identity=33.695652173913, Blast_Score=59, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 11986; Mature: 11855

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHC
GRNPKSGEKVQVPEKYVPHFKPGKELRERVDGRAGEPLKHDSGGDDDQ
CCCCCCCCEEECCHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TKSELVAQLATRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHC
GRNPKSGEKVQVPEKYVPHFKPGKELRERVDGRAGEPLKHDSGGDDDQ
CCCCCCCCEEECCHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA