Definition Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence.
Accession NC_012724
Length 3,906,507

Click here to switch to the map view.

The map label for this gene is yhjE [H]

Identifier: 238026480

GI number: 238026480

Start: 889146

End: 890456

Strand: Reverse

Name: yhjE [H]

Synonym: bglu_1g08240

Alternate gene names: 238026480

Gene position: 890456-889146 (Counterclockwise)

Preceding gene: 238026481

Following gene: 238026479

Centisome position: 22.79

GC content: 69.79

Gene sequence:

>1311_bases
ATGTCCTCCACCCCAGCGACGGCCGACGCCGCGCAGCACGGATCGAGCACGGCCAGCCAGCGGCGCATCGTCTTCGCCAG
CTTCATCGGCACCGCGATCGAGTTCTACGATTTCTATGTCTACGCCACCGCCGCCGCGCTCGTGATCGGCCCGGTGTTCT
TCCCGCACGGCTCGGCCACCGCGCAGGCGCTGTCGGCGTTCGTCACGTTCGGCATCGCGTTCATCGCCCGGCCGATCGGC
TCGTTCCTGTTCGGCCACTTCGGCGACCGCTTCGGCCGCAAGTCCACGCTGGTCGCCTCGCTCTTGGTGATGGGCGTCTC
CACCACGGCGATCGGCTTCGTGCCGGGCTATGACGCGATCGGCACGGTCGCGCCGGTGCTGCTGTGCGTGCTGCGCTTCG
GCCAGGGCATCGGCCTGGGTGGCGAATGGGGCGGCGCGGCGCTGCTGGCCACCGAACACGCCCCGGCCGGCAAGCGCGGC
TGGTTCGGCATGTTCCCGCAGCTCGGCCCGTCGATCGGCTTCCTGATGTCGAACGGCCTGTTCTTCGCGCTCGCGATCGG
CCTGTCCGACGAGCAGTTCCGCAGCTGGGGCTGGCGCGTGCCGTTCCTGGTCAGCGCGGTGCTGGTGGCAGTCGGCCTGT
ACGTGCGCATGAAGATCGCCGAGACGCCCGCGTTCCGGGCCGCGATCGAGCGCAACGAGCGCGTGCGCGTGCCGGTGCTC
GCCCTGATCTCGCAGCACTGGGCGCCCACCCTGCTCGGCGCGCTGTCGATGGTGGTCTGCTATACGCTGTTCTACATCTC
GACGGTGTTCTCGCTGTCCTACGGCGTCGGCACGCTGCACATCGCGCGCACCGACTTCCTCGGCCTGCTCTGCATCGCAG
TGGTGTTCATGGCGATCGCCACGCCGATCTCGGCCTCGGCCGCCGATCGCTACGGCCGCAAGCCGGTGCTGATCGTCGGC
GGCCTGCTGGCCCTGCTGTCGGGCTTCACGATGGCCCCGCTGCTCGGCAGCGGCTCGATGCCGCTGGTCGCGCTCTACCT
GATCATCGAGCTGTTCCTGATGGGCGTGACCTTCGCGCCGATGGGCGCGCTGCTGCCCGAGCTGTTTCCCACCCACGTCC
GCTACACGGGGGCGGGCGTCGCCTACAACCTCGGCGGCATCCTCGGCGCCTCGATCGCGCCGTACATCGCGCAACTGCTT
GTCGCGCGCGGCGGGCTGTCGTGGGTGGGCGGCTACGTGTCGGCGGCCGCGGCGCTCAGCTTGATCGGCGTGCTGCTGAT
GCGCGAAACGCGCGACGCACGTCTGATGTGA

Upstream 100 bases:

>100_bases
CCGGCACCGGCGCAGCACGCGCGGGCCGGCTTCATGCCAATCATTCGAATATCCGGCCGGCACCCTCGCGTGCCGTTTGC
CCCGCACCACGGAAACCATC

Downstream 100 bases:

>100_bases
GCCGGCGGCGAGGCCGCGCGATCGGTCGTGCCGGCCCGCCGTGCGGCCATCGAGGGCGCGCGGGCACACCGCCGCCCGTC
AGCTTGCGGCCTCGGCCCGC

Product: general substrate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 435

Protein sequence:

>436_residues
MSSTPATADAAQHGSSTASQRRIVFASFIGTAIEFYDFYVYATAAALVIGPVFFPHGSATAQALSAFVTFGIAFIARPIG
SFLFGHFGDRFGRKSTLVASLLVMGVSTTAIGFVPGYDAIGTVAPVLLCVLRFGQGIGLGGEWGGAALLATEHAPAGKRG
WFGMFPQLGPSIGFLMSNGLFFALAIGLSDEQFRSWGWRVPFLVSAVLVAVGLYVRMKIAETPAFRAAIERNERVRVPVL
ALISQHWAPTLLGALSMVVCYTLFYISTVFSLSYGVGTLHIARTDFLGLLCIAVVFMAIATPISASAADRYGRKPVLIVG
GLLALLSGFTMAPLLGSGSMPLVALYLIIELFLMGVTFAPMGALLPELFPTHVRYTGAGVAYNLGGILGASIAPYIAQLL
VARGGLSWVGGYVSAAAALSLIGVLLMRETRDARLM

Sequences:

>Translated_436_residues
MSSTPATADAAQHGSSTASQRRIVFASFIGTAIEFYDFYVYATAAALVIGPVFFPHGSATAQALSAFVTFGIAFIARPIG
SFLFGHFGDRFGRKSTLVASLLVMGVSTTAIGFVPGYDAIGTVAPVLLCVLRFGQGIGLGGEWGGAALLATEHAPAGKRG
WFGMFPQLGPSIGFLMSNGLFFALAIGLSDEQFRSWGWRVPFLVSAVLVAVGLYVRMKIAETPAFRAAIERNERVRVPVL
ALISQHWAPTLLGALSMVVCYTLFYISTVFSLSYGVGTLHIARTDFLGLLCIAVVFMAIATPISASAADRYGRKPVLIVG
GLLALLSGFTMAPLLGSGSMPLVALYLIIELFLMGVTFAPMGALLPELFPTHVRYTGAGVAYNLGGILGASIAPYIAQLL
VARGGLSWVGGYVSAAAALSLIGVLLMRETRDARLM
>Mature_435_residues
SSTPATADAAQHGSSTASQRRIVFASFIGTAIEFYDFYVYATAAALVIGPVFFPHGSATAQALSAFVTFGIAFIARPIGS
FLFGHFGDRFGRKSTLVASLLVMGVSTTAIGFVPGYDAIGTVAPVLLCVLRFGQGIGLGGEWGGAALLATEHAPAGKRGW
FGMFPQLGPSIGFLMSNGLFFALAIGLSDEQFRSWGWRVPFLVSAVLVAVGLYVRMKIAETPAFRAAIERNERVRVPVLA
LISQHWAPTLLGALSMVVCYTLFYISTVFSLSYGVGTLHIARTDFLGLLCIAVVFMAIATPISASAADRYGRKPVLIVGG
LLALLSGFTMAPLLGSGSMPLVALYLIIELFLMGVTFAPMGALLPELFPTHVRYTGAGVAYNLGGILGASIAPYIAQLLV
ARGGLSWVGGYVSAAAALSLIGVLLMRETRDARLM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]

Homologues:

Organism=Escherichia coli, GI1789941, Length=440, Percent_Identity=52.7272727272727, Blast_Score=390, Evalue=1e-110,
Organism=Escherichia coli, GI1788292, Length=439, Percent_Identity=35.3075170842825, Blast_Score=257, Evalue=1e-69,
Organism=Escherichia coli, GI1790550, Length=427, Percent_Identity=30.6791569086651, Blast_Score=218, Evalue=4e-58,
Organism=Escherichia coli, GI1788942, Length=449, Percent_Identity=30.5122494432071, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI87082404, Length=414, Percent_Identity=25.6038647342995, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI87082231, Length=336, Percent_Identity=26.1904761904762, Blast_Score=76, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004736
- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196
- InterPro:   IPR005828
- InterPro:   IPR005829 [H]

Pfam domain/function: PF07690 MFS_1; PF00083 Sugar_tr [H]

EC number: NA

Molecular weight: Translated: 45886; Mature: 45754

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSTPATADAAQHGSSTASQRRIVFASFIGTAIEFYDFYVYATAAALVIGPVFFPHGSAT
CCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
AQALSAFVTFGIAFIARPIGSFLFGHFGDRFGRKSTLVASLLVMGVSTTAIGFVPGYDAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEECCCCCCHH
GTVAPVLLCVLRFGQGIGLGGEWGGAALLATEHAPAGKRGWFGMFPQLGPSIGFLMSNGL
HHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHCCE
FFALAIGLSDEQFRSWGWRVPFLVSAVLVAVGLYVRMKIAETPAFRAAIERNERVRVPVL
EEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHH
ALISQHWAPTLLGALSMVVCYTLFYISTVFSLSYGVGTLHIARTDFLGLLCIAVVFMAIA
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHH
TPISASAADRYGRKPVLIVGGLLALLSGFTMAPLLGSGSMPLVALYLIIELFLMGVTFAP
CCCCHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
MGALLPELFPTHVRYTGAGVAYNLGGILGASIAPYIAQLLVARGGLSWVGGYVSAAAALS
HHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LIGVLLMRETRDARLM
HHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SSTPATADAAQHGSSTASQRRIVFASFIGTAIEFYDFYVYATAAALVIGPVFFPHGSAT
CCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
AQALSAFVTFGIAFIARPIGSFLFGHFGDRFGRKSTLVASLLVMGVSTTAIGFVPGYDAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEECCCCCCHH
GTVAPVLLCVLRFGQGIGLGGEWGGAALLATEHAPAGKRGWFGMFPQLGPSIGFLMSNGL
HHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHCCE
FFALAIGLSDEQFRSWGWRVPFLVSAVLVAVGLYVRMKIAETPAFRAAIERNERVRVPVL
EEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHH
ALISQHWAPTLLGALSMVVCYTLFYISTVFSLSYGVGTLHIARTDFLGLLCIAVVFMAIA
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHH
TPISASAADRYGRKPVLIVGGLLALLSGFTMAPLLGSGSMPLVALYLIIELFLMGVTFAP
CCCCHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
MGALLPELFPTHVRYTGAGVAYNLGGILGASIAPYIAQLLVARGGLSWVGGYVSAAAALS
HHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LIGVLLMRETRDARLM
HHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]