| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is ycjP [C]
Identifier: 238026465
GI number: 238026465
Start: 872259
End: 873116
Strand: Direct
Name: ycjP [C]
Synonym: bglu_1g08090
Alternate gene names: 238026465
Gene position: 872259-873116 (Clockwise)
Preceding gene: 238026464
Following gene: 238026466
Centisome position: 22.33
GC content: 63.52
Gene sequence:
>858_bases ATGCAGCCTAAGATGACGATAAGCCGCGGCGTCATTTACGCGGTGCTGATCCTGTTCGCCCTGTACTTCCTGCTGCCGCT CTACGTGATGCTGTCCACGTCCTTCAAGGATCTCGACCAGCTGCGCACCGGCAACCTGCTCACGCCGCCGACCCACTGGA CCATCGATCCGTGGCTCAAGGCCTGGGGCACGGCCTGCACCGGCGTGCGCTGCGACGGCATGAAGCCGTTCTTCTTCAAC TCGCTGAAGATGGTGATCCCGGCCGTGCTGATCTCGTCGCTGATCGGCGCGTTCAACGGCTACGTGCTCACGCACTGGCG CTTTCGCGGCGTGGACGCGCTGTTTACGCTGCTGCTGGTGGGCTGCTTCATCCCGTTCCAGGTGATCCTGCTGCCGATGG CGCGCGTCGAGGGCCTGTTCGGCCTGGCCAACACCACCACCGGGCTGGTGCTGGTGCACGTGGTGTACGGCATCGCGTTC ACCACCATGTTCTTCCGCAACTTCTACGTCAGCGTGCCCGCCGAACTGGTGAAGGCCGCGCGCATCGACGGCGCGGGCTT CTTCACGATCTTCACGCGGATCCTGCTGCCGGTGTCGCTGCCGATCTTCATGGTTTGCCTGATCTGGCAGTTCACCCAGA TCTGGAACGACTTCCTGTTCGGCATCGTGTTCTCCGGCGTCGATTCGATGCCGATCACGGTCGCGCTGAACAATCTCGTG AACACGTCGACGGGCGTGAAGGAATACAACGTCGACATGGCCGGCGCGATCATCGCCGCGCTGCCGACGCTGCTCGTGTA CGTGATCGCCGGCCGCTATTTCGTGCGCGGGCTGACCGCGGGCGCGGTGAAGGGCTGA
Upstream 100 bases:
>100_bases GGGCAGCTCGGCGTGGGCGCGGCCTCGTCGGTGATGATGCTCGTGACCGTGGTCGCGGTGCTCGTGCCGCTGATGTATAT GGAATCGAGGAGCACGCGCA
Downstream 100 bases:
>100_bases CGGGCGCGGCCTTCCCGAACGATTTCCGAACCTACCGGCCGCGCATGCAGGGCGCGCGGCGCGCAGAACAGACGCGGCGC GCGGCGCCGCACCGAGACAG
Product: maltose ABC transporter permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 285; Mature: 285
Protein sequence:
>285_residues MQPKMTISRGVIYAVLILFALYFLLPLYVMLSTSFKDLDQLRTGNLLTPPTHWTIDPWLKAWGTACTGVRCDGMKPFFFN SLKMVIPAVLISSLIGAFNGYVLTHWRFRGVDALFTLLLVGCFIPFQVILLPMARVEGLFGLANTTTGLVLVHVVYGIAF TTMFFRNFYVSVPAELVKAARIDGAGFFTIFTRILLPVSLPIFMVCLIWQFTQIWNDFLFGIVFSGVDSMPITVALNNLV NTSTGVKEYNVDMAGAIIAALPTLLVYVIAGRYFVRGLTAGAVKG
Sequences:
>Translated_285_residues MQPKMTISRGVIYAVLILFALYFLLPLYVMLSTSFKDLDQLRTGNLLTPPTHWTIDPWLKAWGTACTGVRCDGMKPFFFN SLKMVIPAVLISSLIGAFNGYVLTHWRFRGVDALFTLLLVGCFIPFQVILLPMARVEGLFGLANTTTGLVLVHVVYGIAF TTMFFRNFYVSVPAELVKAARIDGAGFFTIFTRILLPVSLPIFMVCLIWQFTQIWNDFLFGIVFSGVDSMPITVALNNLV NTSTGVKEYNVDMAGAIIAALPTLLVYVIAGRYFVRGLTAGAVKG >Mature_285_residues MQPKMTISRGVIYAVLILFALYFLLPLYVMLSTSFKDLDQLRTGNLLTPPTHWTIDPWLKAWGTACTGVRCDGMKPFFFN SLKMVIPAVLISSLIGAFNGYVLTHWRFRGVDALFTLLLVGCFIPFQVILLPMARVEGLFGLANTTTGLVLVHVVYGIAF TTMFFRNFYVSVPAELVKAARIDGAGFFTIFTRILLPVSLPIFMVCLIWQFTQIWNDFLFGIVFSGVDSMPITVALNNLV NTSTGVKEYNVDMAGAIIAALPTLLVYVIAGRYFVRGLTAGAVKG
Specific function: Probably part of a binding-protein-dependent transport system PH1214/15/16. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0395
COG function: function code G; ABC-type sugar transport system, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1787571, Length=289, Percent_Identity=26.9896193771626, Blast_Score=101, Evalue=7e-23, Organism=Escherichia coli, GI1789860, Length=271, Percent_Identity=25.830258302583, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1790464, Length=301, Percent_Identity=27.2425249169435, Blast_Score=73, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 31537; Mature: 31537
Theoretical pI: Translated: 9.55; Mature: 9.55
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQPKMTISRGVIYAVLILFALYFLLPLYVMLSTSFKDLDQLRTGNLLTPPTHWTIDPWLK CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCHHHH AWGTACTGVRCDGMKPFFFNSLKMVIPAVLISSLIGAFNGYVLTHWRFRGVDALFTLLLV HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHCCHHHHHHHHHH GCFIPFQVILLPMARVEGLFGLANTTTGLVLVHVVYGIAFTTMFFRNFYVSVPAELVKAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH RIDGAGFFTIFTRILLPVSLPIFMVCLIWQFTQIWNDFLFGIVFSGVDSMPITVALNNLV HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH NTSTGVKEYNVDMAGAIIAALPTLLVYVIAGRYFVRGLTAGAVKG CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MQPKMTISRGVIYAVLILFALYFLLPLYVMLSTSFKDLDQLRTGNLLTPPTHWTIDPWLK CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCHHHH AWGTACTGVRCDGMKPFFFNSLKMVIPAVLISSLIGAFNGYVLTHWRFRGVDALFTLLLV HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHCCHHHHHHHHHH GCFIPFQVILLPMARVEGLFGLANTTTGLVLVHVVYGIAFTTMFFRNFYVSVPAELVKAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH RIDGAGFFTIFTRILLPVSLPIFMVCLIWQFTQIWNDFLFGIVFSGVDSMPITVALNNLV HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH NTSTGVKEYNVDMAGAIIAALPTLLVYVIAGRYFVRGLTAGAVKG CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9679194 [H]