| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is galE [H]
Identifier: 238026409
GI number: 238026409
Start: 807457
End: 808479
Strand: Reverse
Name: galE [H]
Synonym: bglu_1g07440
Alternate gene names: 238026409
Gene position: 808479-807457 (Counterclockwise)
Preceding gene: 238026410
Following gene: 238026408
Centisome position: 20.7
GC content: 69.7
Gene sequence:
>1023_bases ATGAGTGACAAAGGCACCATCCTCGTGACGGGCGGTGCGGGCTTCATCGGCTCGCATACGGCCGTCGAACTGCTCGGCCA CGGCTACGACGTCGTGATCGTCGACAACCTGGTCAACAGCAAGCGCGTGGCCGTCGACCGGATCGCCGAGATCGCGGGCC GCGCACCCGTGTTCCACGAGCTCGACGCGTGCGACGAGGCCGCGCTCGACAAGGTGTTCGACGCCCACCCGATCACGGCG GCGATCCACTTCGCGGCGCTCAAGGCGGTGGGCGAGTCGGTGGCCAAGCCGATCGACTATTACCGCAACAACCTGGGCAG CCTGCTCTCGCTGCTCGCGGTGATGCGCGCGCGCGAGGTCAGGCAGATGGTGTTCAGCTCGTCGGCGACCGTCTACGGCG TGCCCGAGCGCTCGCCGATCGACGAATCGTTTCCGCTCTCAGCCACCAACCCCTACGGCCAGACCAAGCTGATGGCCGAG CAGATCCTGCGCGACCTCGAGATCTCCGACCCGTCGTGGCGGATCGCGACGCTGCGCTACTTCAACCCGGTGGGCGCGCA CGAGAGCGGCCTGATCGGCGAGGACCCGGCCGGCCTGCCGAACAACCTGATGCCCTATGTCGCGCAGGTCGCGGTGGGCA AGCTCGAACGCCTGCGCGTATTCGGCAACGACTACCCGACGCCCGACGGCACCGGCGTGCGCGACTACATCCACGTGGTC GACCTGGCGCGCGGCCACCTCGCCGCGCTCGACGCGCTGCGCCAGCGCGACGCCAGCTTCACGGTGAACCTCGGCACCGG GCGCGGCTACAGCGTGCTCGACATCGTGCGCGCGTTCGAGGCCGCGAGCGGGCGCAAGGTGCCCTACGAAATCGTCGCGC GCCGGCCCGGCGACGTCGCCGAGTGCTACGCGGACCCGGCCCGCGCGGCCGAGCTGATCGGCTGGCGCGCCGAGTACGGC ATCGAGCGCATGTGCACCGACCACTGGCGCTGGCAGGAGAAGAATCCGCGCGGCTTCGCCTGA
Upstream 100 bases:
>100_bases CGAGAAAGTGTTGCGCGAGTTCGACGAGGCGAACGTCGTCGAACGCTATCGAGAAACCATCCGTGCACTGACAGGCACGG CACTCTGAAGGAGGGCAAGC
Downstream 100 bases:
>100_bases GCTGCGCGGGCGGCACGCGGCACGGCCAGCCCGCCCGGGCTCGGCCGCGCCGCCCGCGTGCCGGCCCGGCCGCGGATCCC GCGCAATCCCTTGACGCACA
Product: UDP-glucose 4-epimerase
Products: NA
Alternate protein names: Galactowaldenase; UDP-galactose 4-epimerase [H]
Number of amino acids: Translated: 340; Mature: 339
Protein sequence:
>340_residues MSDKGTILVTGGAGFIGSHTAVELLGHGYDVVIVDNLVNSKRVAVDRIAEIAGRAPVFHELDACDEAALDKVFDAHPITA AIHFAALKAVGESVAKPIDYYRNNLGSLLSLLAVMRAREVRQMVFSSSATVYGVPERSPIDESFPLSATNPYGQTKLMAE QILRDLEISDPSWRIATLRYFNPVGAHESGLIGEDPAGLPNNLMPYVAQVAVGKLERLRVFGNDYPTPDGTGVRDYIHVV DLARGHLAALDALRQRDASFTVNLGTGRGYSVLDIVRAFEAASGRKVPYEIVARRPGDVAECYADPARAAELIGWRAEYG IERMCTDHWRWQEKNPRGFA
Sequences:
>Translated_340_residues MSDKGTILVTGGAGFIGSHTAVELLGHGYDVVIVDNLVNSKRVAVDRIAEIAGRAPVFHELDACDEAALDKVFDAHPITA AIHFAALKAVGESVAKPIDYYRNNLGSLLSLLAVMRAREVRQMVFSSSATVYGVPERSPIDESFPLSATNPYGQTKLMAE QILRDLEISDPSWRIATLRYFNPVGAHESGLIGEDPAGLPNNLMPYVAQVAVGKLERLRVFGNDYPTPDGTGVRDYIHVV DLARGHLAALDALRQRDASFTVNLGTGRGYSVLDIVRAFEAASGRKVPYEIVARRPGDVAECYADPARAAELIGWRAEYG IERMCTDHWRWQEKNPRGFA >Mature_339_residues SDKGTILVTGGAGFIGSHTAVELLGHGYDVVIVDNLVNSKRVAVDRIAEIAGRAPVFHELDACDEAALDKVFDAHPITAA IHFAALKAVGESVAKPIDYYRNNLGSLLSLLAVMRAREVRQMVFSSSATVYGVPERSPIDESFPLSATNPYGQTKLMAEQ ILRDLEISDPSWRIATLRYFNPVGAHESGLIGEDPAGLPNNLMPYVAQVAVGKLERLRVFGNDYPTPDGTGVRDYIHVVD LARGHLAALDALRQRDASFTVNLGTGRGYSVLDIVRAFEAASGRKVPYEIVARRPGDVAECYADPARAAELIGWRAEYGI ERMCTDHWRWQEKNPRGFA
Specific function: Galactose metabolism; third step. [C]
COG id: COG1087
COG function: function code M; UDP-glucose 4-epimerase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sugar epimerase family [H]
Homologues:
Organism=Homo sapiens, GI56237023, Length=347, Percent_Identity=56.4841498559078, Blast_Score=411, Evalue=1e-115, Organism=Homo sapiens, GI56118217, Length=347, Percent_Identity=56.4841498559078, Blast_Score=411, Evalue=1e-115, Organism=Homo sapiens, GI189083684, Length=347, Percent_Identity=56.4841498559078, Blast_Score=411, Evalue=1e-115, Organism=Homo sapiens, GI42516563, Length=319, Percent_Identity=23.5109717868339, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI7657641, Length=275, Percent_Identity=25.8181818181818, Blast_Score=73, Evalue=4e-13, Organism=Escherichia coli, GI1786974, Length=334, Percent_Identity=52.9940119760479, Blast_Score=370, Evalue=1e-103, Organism=Escherichia coli, GI48994969, Length=354, Percent_Identity=25.1412429378531, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1788353, Length=362, Percent_Identity=25.414364640884, Blast_Score=70, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71982035, Length=344, Percent_Identity=54.9418604651163, Blast_Score=386, Evalue=1e-108, Organism=Caenorhabditis elegans, GI71982038, Length=346, Percent_Identity=54.6242774566474, Blast_Score=386, Evalue=1e-107, Organism=Saccharomyces cerevisiae, GI6319493, Length=347, Percent_Identity=51.0086455331412, Blast_Score=354, Evalue=1e-98, Organism=Drosophila melanogaster, GI19923002, Length=344, Percent_Identity=55.5232558139535, Blast_Score=386, Evalue=1e-108,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001509 - InterPro: IPR005886 - InterPro: IPR016040 - InterPro: IPR008089 [H]
Pfam domain/function: PF01370 Epimerase [H]
EC number: =5.1.3.2 [H]
Molecular weight: Translated: 37120; Mature: 36988
Theoretical pI: Translated: 6.05; Mature: 6.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDKGTILVTGGAGFIGSHTAVELLGHGYDVVIVDNLVNSKRVAVDRIAEIAGRAPVFHE CCCCCCEEEECCCCCCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCHHH LDACDEAALDKVFDAHPITAAIHFAALKAVGESVAKPIDYYRNNLGSLLSLLAVMRAREV HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RQMVFSSSATVYGVPERSPIDESFPLSATNPYGQTKLMAEQILRDLEISDPSWRIATLRY HHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEE FNPVGAHESGLIGEDPAGLPNNLMPYVAQVAVGKLERLRVFGNDYPTPDGTGVRDYIHVV CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH DLARGHLAALDALRQRDASFTVNLGTGRGYSVLDIVRAFEAASGRKVPYEIVARRPGDVA HHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCHH ECYADPARAAELIGWRAEYGIERMCTDHWRWQEKNPRGFA HHHCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure SDKGTILVTGGAGFIGSHTAVELLGHGYDVVIVDNLVNSKRVAVDRIAEIAGRAPVFHE CCCCCEEEECCCCCCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCHHH LDACDEAALDKVFDAHPITAAIHFAALKAVGESVAKPIDYYRNNLGSLLSLLAVMRAREV HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RQMVFSSSATVYGVPERSPIDESFPLSATNPYGQTKLMAEQILRDLEISDPSWRIATLRY HHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEE FNPVGAHESGLIGEDPAGLPNNLMPYVAQVAVGKLERLRVFGNDYPTPDGTGVRDYIHVV CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH DLARGHLAALDALRQRDASFTVNLGTGRGYSVLDIVRAFEAASGRKVPYEIVARRPGDVA HHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCHH ECYADPARAAELIGWRAEYGIERMCTDHWRWQEKNPRGFA HHHCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8978088; 8969509; 9384377 [H]