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The map label for this gene is pcaR [H]

Identifier: 238026356

GI number: 238026356

Start: 742136

End: 742936

Strand: Direct

Name: pcaR [H]

Synonym: bglu_1g06900

Alternate gene names: 238026356

Gene position: 742136-742936 (Clockwise)

Preceding gene: 238026354

Following gene: 238026358

Centisome position: 19.0

GC content: 72.03

Gene sequence:

>801_bases
GTGTACACCGTGTCGAATTTCGCCCGTATCGACGAAGCGCTCGACCAGCGCAAGTTCGTGACGGCGCTCGCGCGCGGGCT
CGAACTGCTGCGCGCGTTCCGGCCCGGCGAGCCGCTGCTGGGCAACCGCGACCTGGTCGAGCGCACCGGCTTGCCCAAGG
CCACCGTGAACCGCCTTGCCTACACGCTGACTGCGCTCGGCTATCTGCGCTTCGACGCGGCGCTCGGCAAGTACGCGCTC
GACGCGGGCGTGCTCTCGCTCGGCTATGCGCTGCTGTCGGGTTCGGGCACGCTCGATCTCGCGCGCCCGCACATGCAGGC
GCTGGCGCGCGAGGTCGGGGCGGCTGTTTCACTCGGCTGCCGCGAGGGCCTCGAGATGATCTACCTGGAGACGATCCGCA
GCGAGACCGCGCTGACGCTCGGGCTCGCGCCCGGTTCGCGGCTGTCGATGCTGACCAGCTCGATGGGGCGCGCCTATCTG
GCGGTGCAGCCGCCCGAGGTGCGTGCGGCGCTGCTCGCCCGGCTGAAGCAGGCGGCAGGGCCGGCGCGCGTGGCGGCCGC
GCGCGTGGCCGCGGCCGAGCGCGCGCTCGACGATTTCGCGGCCGATGGCTGCTGTTATTCGTTTCGCGACTGGCATGACG
ACGTCAACGCGGTGGCGGTGCCGTTTCGCGAGCCGCACCAGGCACGCTGGCTGATCCTCAGCTGCAGCGGGCCGGCCTCG
TCGATGGGGGAGGCGCTGTTTCGCGAGCGCATCGGGCCGCAATTGCGCGCGCTCGCGCGCCGGCTCGGCGAGCTCGCCTA
G

Upstream 100 bases:

>100_bases
GCGGATCGTCCCATTGGAAAGCGGTGGTGCTCATCGTGTCGGCTCCTTGCTTGACTGGAGTTCCGCACTGCGGAACAATG
TTTTGCAATTTTGAGATTGA

Downstream 100 bases:

>100_bases
CGCGCGGCGGCCTGCGCGCCGGTGCCGGCGGTGTGCCGCGCGCCAACCCGGCCGCGCGGCGTCAGACCGGCGCGGGCTGG
GTGAAGGCCGGCCCCTGCAT

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MYTVSNFARIDEALDQRKFVTALARGLELLRAFRPGEPLLGNRDLVERTGLPKATVNRLAYTLTALGYLRFDAALGKYAL
DAGVLSLGYALLSGSGTLDLARPHMQALAREVGAAVSLGCREGLEMIYLETIRSETALTLGLAPGSRLSMLTSSMGRAYL
AVQPPEVRAALLARLKQAAGPARVAAARVAAAERALDDFAADGCCYSFRDWHDDVNAVAVPFREPHQARWLILSCSGPAS
SMGEALFRERIGPQLRALARRLGELA

Sequences:

>Translated_266_residues
MYTVSNFARIDEALDQRKFVTALARGLELLRAFRPGEPLLGNRDLVERTGLPKATVNRLAYTLTALGYLRFDAALGKYAL
DAGVLSLGYALLSGSGTLDLARPHMQALAREVGAAVSLGCREGLEMIYLETIRSETALTLGLAPGSRLSMLTSSMGRAYL
AVQPPEVRAALLARLKQAAGPARVAAARVAAAERALDDFAADGCCYSFRDWHDDVNAVAVPFREPHQARWLILSCSGPAS
SMGEALFRERIGPQLRALARRLGELA
>Mature_266_residues
MYTVSNFARIDEALDQRKFVTALARGLELLRAFRPGEPLLGNRDLVERTGLPKATVNRLAYTLTALGYLRFDAALGKYAL
DAGVLSLGYALLSGSGTLDLARPHMQALAREVGAAVSLGCREGLEMIYLETIRSETALTLGLAPGSRLSMLTSSMGRAYL
AVQPPEVRAALLARLKQAAGPARVAAARVAAAERALDDFAADGCCYSFRDWHDDVNAVAVPFREPHQARWLILSCSGPAS
SMGEALFRERIGPQLRALARRLGELA

Specific function: Positive regulator of all genes within the pca regulon, pcaBDC, pcaIJ and pcaF. Also required for the chemotactic response to aromatic compounds [H]

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI87082359, Length=226, Percent_Identity=25.6637168141593, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1789999, Length=210, Percent_Identity=26.6666666666667, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012794
- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 28657; Mature: 28657

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYTVSNFARIDEALDQRKFVTALARGLELLRAFRPGEPLLGNRDLVERTGLPKATVNRLA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCHHHHHHHH
YTLTALGYLRFDAALGKYALDAGVLSLGYALLSGSGTLDLARPHMQALAREVGAAVSLGC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
REGLEMIYLETIRSETALTLGLAPGSRLSMLTSSMGRAYLAVQPPEVRAALLARLKQAAG
HHCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHCC
PARVAAARVAAAERALDDFAADGCCYSFRDWHDDVNAVAVPFREPHQARWLILSCSGPAS
HHHHHHHHHHHHHHHHHHHHCCCCEECHHHHCCCCCEEEECCCCCCCCEEEEEECCCCHH
SMGEALFRERIGPQLRALARRLGELA
HHHHHHHHHHCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MYTVSNFARIDEALDQRKFVTALARGLELLRAFRPGEPLLGNRDLVERTGLPKATVNRLA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCHHHHHHHH
YTLTALGYLRFDAALGKYALDAGVLSLGYALLSGSGTLDLARPHMQALAREVGAAVSLGC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
REGLEMIYLETIRSETALTLGLAPGSRLSMLTSSMGRAYLAVQPPEVRAALLARLKQAAG
HHCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHCC
PARVAAARVAAAERALDDFAADGCCYSFRDWHDDVNAVAVPFREPHQARWLILSCSGPAS
HHHHHHHHHHHHHHHHHHHHCCCCEECHHHHCCCCCEEEECCCCCCCCEEEEEECCCCHH
SMGEALFRERIGPQLRALARRLGELA
HHHHHHHHHHCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8083169 [H]