| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is ahpC [C]
Identifier: 238026354
GI number: 238026354
Start: 740099
End: 740740
Strand: Direct
Name: ahpC [C]
Synonym: bglu_1g06880
Alternate gene names: 238026354
Gene position: 740099-740740 (Clockwise)
Preceding gene: 238026350
Following gene: 238026356
Centisome position: 18.95
GC content: 60.59
Gene sequence:
>642_bases ATGAGTCTACGTCTCGGCGACACCGCGCCCGATTTCGAGCAGGATTCGAGTCTCGGCCGCATCAAGTTCCACGAGTGGCT CGGCGACAGCTGGGGTGTGCTGTTCTCGCATCCGGCCGACTATACGCCCGTCTGCACCACCGAGCTGGGCCTGACCGCCA AGCTCAAGGACGAGTTCGAGAAGCGCAACGTCAAGGCGATCGCGCTGTCGGTCGACAATGTCGAATCGCACAAAGGCTGG ATCAACGACATCAACGAAACGCAGGCGACCAGTGTGAATTTTCCGATCCTCGCGGACAGCGACCGGAAGGTGTCGGAACT CTACGACATGATTCACCCGAACGCGAACGAGACGCTGACGGTGCGTTCGCTGTTCGTGATCGATCCGAAGAAGAAGGTGC GCCTGACCATCACCTATCCGGCCAGCACCGGCCGCAACTTCGACGAAGTGCTGCGCGTGATCGATTCGCTGCAGTTGACC GACAACTACAAGGTGGCGACGCCGGGCAACTGGAAGGACGGCGACGACGTGGTGATCGTGCCGTCGCTGAAGGACGAGGA CGAACTGAAGCAACGCTTTCCGAAGGGCTACAAGGCGCTGCGTCCGTACCTGCGCCTCACGCCGCAACCGAACAAGCAGT GA
Upstream 100 bases:
>100_bases ATCGTTGCCGCAACAGCCGGTTGACGTAAGCTAGAAGGCTCGGCTGCGTGCTTGCCGCGCGCGGCATCCGTCATCGAATC ATCACCGCAGGAGGAGCACC
Downstream 100 bases:
>100_bases GACGGCGCGCGGCGCGAGCCGCGCTTGCCTGCCGGCTTGCCGGCCGCACCAACCGCAACGGGCATCGCCGATCGCGCTGC CCGTTTTGCATGGCGCCTGC
Product: putative oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 213; Mature: 212
Protein sequence:
>213_residues MSLRLGDTAPDFEQDSSLGRIKFHEWLGDSWGVLFSHPADYTPVCTTELGLTAKLKDEFEKRNVKAIALSVDNVESHKGW INDINETQATSVNFPILADSDRKVSELYDMIHPNANETLTVRSLFVIDPKKKVRLTITYPASTGRNFDEVLRVIDSLQLT DNYKVATPGNWKDGDDVVIVPSLKDEDELKQRFPKGYKALRPYLRLTPQPNKQ
Sequences:
>Translated_213_residues MSLRLGDTAPDFEQDSSLGRIKFHEWLGDSWGVLFSHPADYTPVCTTELGLTAKLKDEFEKRNVKAIALSVDNVESHKGW INDINETQATSVNFPILADSDRKVSELYDMIHPNANETLTVRSLFVIDPKKKVRLTITYPASTGRNFDEVLRVIDSLQLT DNYKVATPGNWKDGDDVVIVPSLKDEDELKQRFPKGYKALRPYLRLTPQPNKQ >Mature_212_residues SLRLGDTAPDFEQDSSLGRIKFHEWLGDSWGVLFSHPADYTPVCTTELGLTAKLKDEFEKRNVKAIALSVDNVESHKGWI NDINETQATSVNFPILADSDRKVSELYDMIHPNANETLTVRSLFVIDPKKKVRLTITYPASTGRNFDEVLRVIDSLQLTD NYKVATPGNWKDGDDVVIVPSLKDEDELKQRFPKGYKALRPYLRLTPQPNKQ
Specific function: Directly Reduces Organic Hydroperoxides In Its Reduced Dithiol Form. [C]
COG id: COG0450
COG function: function code O; Peroxiredoxin
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Homo sapiens, GI4758638, Length=222, Percent_Identity=52.7027027027027, Blast_Score=231, Evalue=3e-61, Organism=Homo sapiens, GI32189392, Length=190, Percent_Identity=33.6842105263158, Blast_Score=106, Evalue=1e-23, Organism=Homo sapiens, GI4505591, Length=181, Percent_Identity=30.3867403314917, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI32455266, Length=181, Percent_Identity=30.3867403314917, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI32455264, Length=181, Percent_Identity=30.3867403314917, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI5453549, Length=166, Percent_Identity=30.7228915662651, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI32483377, Length=161, Percent_Identity=30.4347826086957, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI5802974, Length=161, Percent_Identity=30.4347826086957, Blast_Score=82, Evalue=5e-16, Organism=Escherichia coli, GI1786822, Length=154, Percent_Identity=31.1688311688312, Blast_Score=76, Evalue=1e-15, Organism=Caenorhabditis elegans, GI25153706, Length=199, Percent_Identity=41.7085427135678, Blast_Score=167, Evalue=4e-42, Organism=Caenorhabditis elegans, GI193204376, Length=189, Percent_Identity=30.6878306878307, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI32565831, Length=189, Percent_Identity=30.6878306878307, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17554494, Length=196, Percent_Identity=30.6122448979592, Blast_Score=90, Evalue=7e-19, Organism=Saccharomyces cerevisiae, GI6319407, Length=212, Percent_Identity=55.188679245283, Blast_Score=235, Evalue=4e-63, Organism=Saccharomyces cerevisiae, GI6323613, Length=193, Percent_Identity=29.0155440414508, Blast_Score=81, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6320661, Length=193, Percent_Identity=29.0155440414508, Blast_Score=75, Evalue=8e-15, Organism=Drosophila melanogaster, GI24581278, Length=219, Percent_Identity=52.0547945205479, Blast_Score=227, Evalue=5e-60, Organism=Drosophila melanogaster, GI24652436, Length=203, Percent_Identity=52.2167487684729, Blast_Score=202, Evalue=2e-52, Organism=Drosophila melanogaster, GI24652434, Length=203, Percent_Identity=51.7241379310345, Blast_Score=201, Evalue=4e-52, Organism=Drosophila melanogaster, GI17975518, Length=203, Percent_Identity=51.7241379310345, Blast_Score=200, Evalue=5e-52, Organism=Drosophila melanogaster, GI17738015, Length=200, Percent_Identity=31.5, Blast_Score=95, Evalue=3e-20, Organism=Drosophila melanogaster, GI17157991, Length=168, Percent_Identity=32.1428571428571, Blast_Score=94, Evalue=7e-20, Organism=Drosophila melanogaster, GI24641739, Length=168, Percent_Identity=32.1428571428571, Blast_Score=94, Evalue=7e-20, Organism=Drosophila melanogaster, GI24656348, Length=176, Percent_Identity=30.1136363636364, Blast_Score=86, Evalue=1e-17, Organism=Drosophila melanogaster, GI17864676, Length=176, Percent_Identity=30.1136363636364, Blast_Score=86, Evalue=1e-17, Organism=Drosophila melanogaster, GI21357347, Length=193, Percent_Identity=26.4248704663212, Blast_Score=84, Evalue=5e-17,
Paralogues:
None
Copy number: 300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2250 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 6040 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1580 Molecules/Cell In: Stationary-Phase
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000866 - InterPro: IPR019479 - InterPro: IPR022915 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF10417 1-cysPrx_C; PF00578 AhpC-TSA [H]
EC number: =1.11.1.15 [H]
Molecular weight: Translated: 24164; Mature: 24032
Theoretical pI: Translated: 5.73; Mature: 5.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLRLGDTAPDFEQDSSLGRIKFHEWLGDSWGVLFSHPADYTPVCTTELGLTAKLKDEFE CCEECCCCCCCCCCCCCCCEEEEHHHCCCCCCEEEECCCCCCCEEECCCCCEEHHHHHHH KRNVKAIALSVDNVESHKGWINDINETQATSVNFPILADSDRKVSELYDMIHPNANETLT HCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHCCCCCCEEE VRSLFVIDPKKKVRLTITYPASTGRNFDEVLRVIDSLQLTDNYKVATPGNWKDGDDVVIV EEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHEECCCCEEECCCCCCCCCCCEEEE PSLKDEDELKQRFPKGYKALRPYLRLTPQPNKQ CCCCCHHHHHHHCCCCHHHHHHHEECCCCCCCC >Mature Secondary Structure SLRLGDTAPDFEQDSSLGRIKFHEWLGDSWGVLFSHPADYTPVCTTELGLTAKLKDEFE CEECCCCCCCCCCCCCCCEEEEHHHCCCCCCEEEECCCCCCCEEECCCCCEEHHHHHHH KRNVKAIALSVDNVESHKGWINDINETQATSVNFPILADSDRKVSELYDMIHPNANETLT HCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHCCCCCCEEE VRSLFVIDPKKKVRLTITYPASTGRNFDEVLRVIDSLQLTDNYKVATPGNWKDGDDVVIV EEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHEECCCCEEECCCCCCCCCCCEEEE PSLKDEDELKQRFPKGYKALRPYLRLTPQPNKQ CCCCCHHHHHHHCCCCHHHHHHHEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9537320 [H]