| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is ydfG [H]
Identifier: 238026342
GI number: 238026342
Start: 732210
End: 732956
Strand: Reverse
Name: ydfG [H]
Synonym: bglu_1g06760
Alternate gene names: 238026342
Gene position: 732956-732210 (Counterclockwise)
Preceding gene: 238026343
Following gene: 238026341
Centisome position: 18.76
GC content: 69.61
Gene sequence:
>747_bases ATGATCGTGTTCGTCACCGGCGCATCCGCGGGATTCGGCGCCGCCATCGCCAGGGCCTTTGTCAAGGGCGGCCACCGCGT CGTCGCCAGCGCGCGCCGCAAGGATCGCCTCGACGCACTCGCCGCCGAACTGGGCGAGGCCCTGCTGCCCGTGGAGCTCG ACGTGCGCGACCGCGCCGCCGTGGCCGCCGTGCTGAAGGGCCTGCCCGCCGCGTTCACCGAGATCGACGTGCTCGTCAAC AATGCGGGTCTCGCGCTCGGCGTGGAGCCTGCCCAGAAGGCCAGCCTCGACGAGTGGCAGACCATGATCGACACCAACTG CTCGGGCCTCGTCACCGTCACGCACACGCTGCTGCCCGGCATGATCGCGCGCGGCCGGGGCCACATCTTCAATCTCGGCT CGGTCGCGGGTACCTATCCCTACGCCGGCGGCAACGTCTACGGCGCGACCAAGGCATTCGTCCGACAATTCAGCCTGAAC CTGCGCACCGACCTGCTCGGCACGCCGCTGCGCGTGACCGACATCGAGCCGGGCCTCTGCGGCGGCACCGAGTTCTCGAA CGTGCGCTTTCGCGGCGACGACGCCAAGGCCTCGAACGTCTACGCGAACGTCCAGCCGCTCACGGCCGAGGACATTGCCG ACACCATCTACTGGATCGCGACGCGCCCGGCCCACGTCAACATCAACACGGTCGAAATGATGCCCGTCGCCCAGGCACCG GCCGGCCTCGCCGTGCACCGCGGCTGA
Upstream 100 bases:
>100_bases GCCTGCCCGCCAAGGCCGGCGTCGCCTTGCCGCAACGCGGCAATGTCAGTAGGCTAACGCGTTCCCCATCGCTTCCTTTC ACCGACCAGGAGCAGCAGCA
Downstream 100 bases:
>100_bases GTGCTTCCGAGCCCCGCCGGAGCCCGCGCAGCAGGGCTCCGGCGGGGCTCGGGCCAGTCATCGCACACGCAACATTCGGT TACGAAAAGAGGCAGGGGCT
Product: Short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 248; Mature: 248
Protein sequence:
>248_residues MIVFVTGASAGFGAAIARAFVKGGHRVVASARRKDRLDALAAELGEALLPVELDVRDRAAVAAVLKGLPAAFTEIDVLVN NAGLALGVEPAQKASLDEWQTMIDTNCSGLVTVTHTLLPGMIARGRGHIFNLGSVAGTYPYAGGNVYGATKAFVRQFSLN LRTDLLGTPLRVTDIEPGLCGGTEFSNVRFRGDDAKASNVYANVQPLTAEDIADTIYWIATRPAHVNINTVEMMPVAQAP AGLAVHRG
Sequences:
>Translated_248_residues MIVFVTGASAGFGAAIARAFVKGGHRVVASARRKDRLDALAAELGEALLPVELDVRDRAAVAAVLKGLPAAFTEIDVLVN NAGLALGVEPAQKASLDEWQTMIDTNCSGLVTVTHTLLPGMIARGRGHIFNLGSVAGTYPYAGGNVYGATKAFVRQFSLN LRTDLLGTPLRVTDIEPGLCGGTEFSNVRFRGDDAKASNVYANVQPLTAEDIADTIYWIATRPAHVNINTVEMMPVAQAP AGLAVHRG >Mature_248_residues MIVFVTGASAGFGAAIARAFVKGGHRVVASARRKDRLDALAAELGEALLPVELDVRDRAAVAAVLKGLPAAFTEIDVLVN NAGLALGVEPAQKASLDEWQTMIDTNCSGLVTVTHTLLPGMIARGRGHIFNLGSVAGTYPYAGGNVYGATKAFVRQFSLN LRTDLLGTPLRVTDIEPGLCGGTEFSNVRFRGDDAKASNVYANVQPLTAEDIADTIYWIATRPAHVNINTVEMMPVAQAP AGLAVHRG
Specific function: Catalyzes the NADP-dependent oxidation of L-allo- threonine and L-serine [H]
COG id: COG4221
COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI109715829, Length=248, Percent_Identity=31.8548387096774, Blast_Score=119, Evalue=3e-27, Organism=Homo sapiens, GI40548397, Length=179, Percent_Identity=34.0782122905028, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI214010158, Length=179, Percent_Identity=34.0782122905028, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI214010156, Length=179, Percent_Identity=34.0782122905028, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI22758144, Length=179, Percent_Identity=34.0782122905028, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI7657478, Length=183, Percent_Identity=36.6120218579235, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI7706318, Length=188, Percent_Identity=35.1063829787234, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI150247226, Length=190, Percent_Identity=33.6842105263158, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI20149619, Length=186, Percent_Identity=30.6451612903226, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI22507405, Length=178, Percent_Identity=32.0224719101124, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI7705855, Length=192, Percent_Identity=30.2083333333333, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI157739938, Length=184, Percent_Identity=29.8913043478261, Blast_Score=78, Evalue=6e-15, Organism=Homo sapiens, GI19743808, Length=178, Percent_Identity=29.2134831460674, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI4557649, Length=178, Percent_Identity=29.2134831460674, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI10190704, Length=228, Percent_Identity=27.1929824561404, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI19923817, Length=189, Percent_Identity=26.4550264550265, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI50726952, Length=180, Percent_Identity=31.6666666666667, Blast_Score=66, Evalue=2e-11, Organism=Escherichia coli, GI1787820, Length=247, Percent_Identity=64.7773279352227, Blast_Score=346, Evalue=8e-97, Organism=Escherichia coli, GI1787335, Length=237, Percent_Identity=30.8016877637131, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI87082100, Length=180, Percent_Identity=36.1111111111111, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1786812, Length=240, Percent_Identity=27.5, Blast_Score=71, Evalue=7e-14, Organism=Caenorhabditis elegans, GI71994600, Length=239, Percent_Identity=24.6861924686192, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17559104, Length=247, Percent_Identity=28.3400809716599, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17560150, Length=184, Percent_Identity=29.3478260869565, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17538480, Length=189, Percent_Identity=27.5132275132275, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17560676, Length=202, Percent_Identity=27.7227722772277, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17562910, Length=247, Percent_Identity=26.3157894736842, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17560332, Length=246, Percent_Identity=29.2682926829268, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71994604, Length=238, Percent_Identity=23.9495798319328, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17562990, Length=186, Percent_Identity=29.5698924731183, Blast_Score=70, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17544670, Length=245, Percent_Identity=26.1224489795918, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17562908, Length=188, Percent_Identity=27.1276595744681, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI193204405, Length=189, Percent_Identity=26.984126984127, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17563726, Length=239, Percent_Identity=26.3598326359833, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=245, Percent_Identity=37.9591836734694, Blast_Score=162, Evalue=4e-41, Organism=Saccharomyces cerevisiae, GI6322067, Length=176, Percent_Identity=28.4090909090909, Blast_Score=68, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6322227, Length=199, Percent_Identity=24.1206030150754, Blast_Score=67, Evalue=2e-12, Organism=Drosophila melanogaster, GI116007236, Length=251, Percent_Identity=32.6693227091633, Blast_Score=114, Evalue=7e-26, Organism=Drosophila melanogaster, GI21358495, Length=184, Percent_Identity=30.9782608695652, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI281364494, Length=248, Percent_Identity=29.8387096774194, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI116007238, Length=186, Percent_Identity=34.9462365591398, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI23397609, Length=180, Percent_Identity=33.8888888888889, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI24643142, Length=235, Percent_Identity=28.936170212766, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI21357041, Length=182, Percent_Identity=31.3186813186813, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI28571526, Length=182, Percent_Identity=31.3186813186813, Blast_Score=81, Evalue=7e-16, Organism=Drosophila melanogaster, GI24584748, Length=181, Percent_Identity=30.3867403314917, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI161076933, Length=181, Percent_Identity=30.3867403314917, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24640442, Length=194, Percent_Identity=30.9278350515464, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI24641232, Length=255, Percent_Identity=29.4117647058824, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24641388, Length=250, Percent_Identity=30.4, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI116007234, Length=251, Percent_Identity=31.0756972111554, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI24663911, Length=247, Percent_Identity=27.9352226720648, Blast_Score=77, Evalue=9e-15, Organism=Drosophila melanogaster, GI24644339, Length=195, Percent_Identity=28.2051282051282, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI28571387, Length=250, Percent_Identity=28, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24580925, Length=230, Percent_Identity=29.1304347826087, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24648693, Length=249, Percent_Identity=27.3092369477912, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI21355889, Length=249, Percent_Identity=27.3092369477912, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI28574402, Length=180, Percent_Identity=30, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI24584744, Length=180, Percent_Identity=30, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI24648944, Length=239, Percent_Identity=26.7782426778243, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI17737361, Length=190, Percent_Identity=30, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26080; Mature: 26080
Theoretical pI: Translated: 7.06; Mature: 7.06
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIVFVTGASAGFGAAIARAFVKGGHRVVASARRKDRLDALAAELGEALLPVELDVRDRAA CEEEEECCCCCHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHH VAAVLKGLPAAFTEIDVLVNNAGLALGVEPAQKASLDEWQTMIDTNCSGLVTVTHTLLPG HHHHHHCCCHHHHEEEEEEECCCEEEECCCHHHCCHHHHHHHHHCCCCCEEEHHHHHHHH MIARGRGHIFNLGSVAGTYPYAGGNVYGATKAFVRQFSLNLRTDLLGTPLRVTDIEPGLC HHHCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCEEEEECCCCCC GGTEFSNVRFRGDDAKASNVYANVQPLTAEDIADTIYWIATRPAHVNINTVEMMPVAQAP CCCCCCCEEEECCCCCCCCEEEECCCCCHHHHHHHEEEEEECCCEEEEEEEEEEECCCCC AGLAVHRG CCEEEECC >Mature Secondary Structure MIVFVTGASAGFGAAIARAFVKGGHRVVASARRKDRLDALAAELGEALLPVELDVRDRAA CEEEEECCCCCHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHH VAAVLKGLPAAFTEIDVLVNNAGLALGVEPAQKASLDEWQTMIDTNCSGLVTVTHTLLPG HHHHHHCCCHHHHEEEEEEECCCEEEECCCHHHCCHHHHHHHHHCCCCCEEEHHHHHHHH MIARGRGHIFNLGSVAGTYPYAGGNVYGATKAFVRQFSLNLRTDLLGTPLRVTDIEPGLC HHHCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCEEEEECCCCCC GGTEFSNVRFRGDDAKASNVYANVQPLTAEDIADTIYWIATRPAHVNINTVEMMPVAQAP CCCCCCCEEEECCCCCCCCEEEECCCCCHHHHHHHEEEEEECCCEEEEEEEEEEECCCCC AGLAVHRG CCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11677608; 12644504 [H]