| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
Click here to switch to the map view.
The map label for this gene is 238026260
Identifier: 238026260
GI number: 238026260
Start: 623236
End: 623865
Strand: Reverse
Name: 238026260
Synonym: bglu_1g05930
Alternate gene names: NA
Gene position: 623865-623236 (Counterclockwise)
Preceding gene: 238026261
Following gene: 238026256
Centisome position: 15.97
GC content: 74.29
Gene sequence:
>630_bases CTGGCCACCGCGCAGCAGCTGGCCGAATGGCTGTCGGTATCGCCGCGCACGGTCTATCGCGACGTCCGCGACCTGCAGCT GTCGGGCGTGCCGATCGAGGGCGAGGCGGGGATCGGCTACCGCCTGAACCGCGCCGCGCACCTGCCGCCGCTGACCTTCA CCAGCGAGGAGCTGGCGGCGCTCGCGGCCGGCGCGCGCATGCTCGAATCGTGGGGCGGCGCGACCCTGGCGGGCGGGGCA CGCTCGGCGCTCGCCAAGATCGCCTCGGCGATGCCGGCCGACAAGCGCGTCGCGCTCGACCGCCTGCCCCTGTTCGCGCC GTCGATCCACGTGGACGCGGCGTTCCGCGAGGCCGTCGACGCGCTTCAGCTGGCCATCGACGGCCGGCGCGTCGTGCGCC TTTCCTATCGCGACAAGCGGGATGCGCCGAGCGAGCGGCGCGTCTGGCCGCTCGGCATGGCGTACTGGGGCGGGCAGTGG ACGGTGGCCGCCTGGTGCGAGCTGCGCGGCGCGTTCCGCAATTTCGACCTCGCGCGGATGCGCGGCATCGTGGCCTGCGA GGTCTATCCCGACGTCGCGGGGCGCCGGCTCGCCGATTTCCTGCGCACCGTGGAGCGCGGCAGCCACTGA
Upstream 100 bases:
>100_bases CGCACGGCAGCACGCCGGGCACGGCCGGCGCGCTCGTCTACCTGAACGCGCACGCATCGGTGTCGGCCGCGCTCGAACGC GCGCGGCGCGCGGGCGGCGC
Downstream 100 bases:
>100_bases GCGGCGCGCGCGGCGCTATTCGACCGCCTTCACCATGTCCTCGACCACCTTCTTGGCGTCGCCGAACACCATCATGGTCT TGTCCATGTAGAACAGCTCG
Product: Helix-turn-helix, type 11 domain-containing protein
Products: NA
Alternate protein names: Transcriptional Regulator; DeoR Family Transcriptional Regulator; Helix-Turn-Helix Domain Containing Protein Type; HTH Domain Family; DeoR-Family Transcriptional Regulator; Transcription Regulator Protein; HTH Type; Regulatory Protein; NB-Dependent Receptor; Repressor Transcription Regulator Protein; Transcriptional Regulator Protein; HTH Domain-Containing Protein; DeoR Family Transriptional Regulator; Transcription Regulator Protein DeoR Family; HTH Domain-Containing; Helix-Turn-Helix Domain-Containing Protein; Deor Family Transcriptional Regulator; HTH Domain Protein; Transcriptional Regulator-Like; Bacterial Regulatory Protein DeoR Family; Protein Containing HTH Domain; Transriptional Regulator DeoR Family; Regulatory Protein Deor; LOW QUALITY PROTEIN Helix-Turn-Helix Type
Number of amino acids: Translated: 209; Mature: 208
Protein sequence:
>209_residues MATAQQLAEWLSVSPRTVYRDVRDLQLSGVPIEGEAGIGYRLNRAAHLPPLTFTSEELAALAAGARMLESWGGATLAGGA RSALAKIASAMPADKRVALDRLPLFAPSIHVDAAFREAVDALQLAIDGRRVVRLSYRDKRDAPSERRVWPLGMAYWGGQW TVAAWCELRGAFRNFDLARMRGIVACEVYPDVAGRRLADFLRTVERGSH
Sequences:
>Translated_209_residues MATAQQLAEWLSVSPRTVYRDVRDLQLSGVPIEGEAGIGYRLNRAAHLPPLTFTSEELAALAAGARMLESWGGATLAGGA RSALAKIASAMPADKRVALDRLPLFAPSIHVDAAFREAVDALQLAIDGRRVVRLSYRDKRDAPSERRVWPLGMAYWGGQW TVAAWCELRGAFRNFDLARMRGIVACEVYPDVAGRRLADFLRTVERGSH >Mature_208_residues ATAQQLAEWLSVSPRTVYRDVRDLQLSGVPIEGEAGIGYRLNRAAHLPPLTFTSEELAALAAGARMLESWGGATLAGGAR SALAKIASAMPADKRVALDRLPLFAPSIHVDAAFREAVDALQLAIDGRRVVRLSYRDKRDAPSERRVWPLGMAYWGGQWT VAAWCELRGAFRNFDLARMRGIVACEVYPDVAGRRLADFLRTVERGSH
Specific function: Unknown
COG id: COG2378
COG function: function code K; Predicted transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22931; Mature: 22799
Theoretical pI: Translated: 9.84; Mature: 9.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATAQQLAEWLSVSPRTVYRDVRDLQLSGVPIEGEAGIGYRLNRAAHLPPLTFTSEELAA CCCHHHHHHHHCCCCHHHHHHHHHHEECCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHH LAAGARMLESWGGATLAGGARSALAKIASAMPADKRVALDRLPLFAPSIHVDAAFREAVD HHHHHHHHHHCCCCEECCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHH ALQLAIDGRRVVRLSYRDKRDAPSERRVWPLGMAYWGGQWTVAAWCELRGAFRNFDLARM HHHHHHCCCEEEEEECCCCCCCCCCCCEEECCCEEECCCCHHHHHHHHHHHHHCCCHHHH RGIVACEVYPDVAGRRLADFLRTVERGSH CCEEEEEECCCHHHHHHHHHHHHHHCCCC >Mature Secondary Structure ATAQQLAEWLSVSPRTVYRDVRDLQLSGVPIEGEAGIGYRLNRAAHLPPLTFTSEELAA CCHHHHHHHHCCCCHHHHHHHHHHEECCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHH LAAGARMLESWGGATLAGGARSALAKIASAMPADKRVALDRLPLFAPSIHVDAAFREAVD HHHHHHHHHHCCCCEECCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHH ALQLAIDGRRVVRLSYRDKRDAPSERRVWPLGMAYWGGQWTVAAWCELRGAFRNFDLARM HHHHHHCCCEEEEEECCCCCCCCCCCCEEECCCEEECCCCHHHHHHHHHHHHHCCCHHHH RGIVACEVYPDVAGRRLADFLRTVERGSH CCEEEEEECCCHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA