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The map label for this gene is qseD [H]

Identifier: 238026226

GI number: 238026226

Start: 588668

End: 589624

Strand: Direct

Name: qseD [H]

Synonym: bglu_1g05570

Alternate gene names: 238026226

Gene position: 588668-589624 (Clockwise)

Preceding gene: 238026224

Following gene: 238026227

Centisome position: 15.07

GC content: 71.58

Gene sequence:

>957_bases
ATGGAACTGAAATGGCTCGAAGACTTCGTCTCGCTCGCGGAGACGCGCAGCTTCAGCCGTTCGGCCGAATCGCGGCACGT
CTCGCAGCCGGCGTTCTCGCGGCGCATCCAGGCGCTCGAGGCGTGGCTCGGCACCGAGCTGATCGACCGCTCCGTGTACC
CGACGCGGCTCACGCAGGCCGGCCAGGTGTTCCTCGAACAGGCGCTGACCATCCTCTCGCAGGCGCACGAGGCGCGCACG
GTGCTGCGCGGCCATGCGGCGGCGCCGGTGCCGACCATCGAATTCGCGGTGCCGCACACGCTTTCGCTGACCTATTTCCC
GTTCTGGCTGCAGCGCATCGAGGCCAAGCTGGGGCCGGTGCATACGCGGCTGCGCGCGCTGAACGTCCACGACGCGGTGC
TCTCGCTCGTCGAGGGCGGCTGCGACCTGGTGATGGGCTACCACCACCCGAGCCATCCGGTGGCGCTCGATCCGTCGCGC
TACGACATGCTGACGCTCGGCATGGAGCCGATCAGCCCGTTCTCGGCGCCGCTGCGCGCCGGCCGGCCGCGCTACACGCT
GCCCGGCGGCGCCGATGCGGCGGTGCCCTACCTGTCCTACACGCCGAACGCCTACCTGGGCCGGATGACCGAGGTGATCA
TCGCCAACGCGCGCGAGCCGCTGCATCTGGACCGGGTCTATGAGACCGACATGGCCGAGGGGCTCAAGGCGATGGCGCTG
GCCGGCCACGGCGTCGCGTTCCTGCCGCACAGCGCGGTCGAGGACGCGGTGGCGCGCGGCGAGCTGATCCGCCTCGACCG
GCCCGCGCGCGCGGGCGGCGCGCAGCCGTTCACGCTGACCATGGAGATCCGGCTCTATCGCGACAAGCTCGCCGTGCAGG
GCGACGAGGCGCGCCAGGCGCTGATGCGCGCGCTGTGGGACGCCGTCGTCGAGGAGCTCGCGCAGCGTGCGCGCTGA

Upstream 100 bases:

>100_bases
GGCAGGGCGCCGGGGGGCGGCCCGCGCGGGCGCCTTCGCCTGCGCCGCCGCCGCCCGGCTACAATGCGGGCTCCGCAATC
GCCGCGCAGCAAGGGTCCGC

Downstream 100 bases:

>100_bases
AATGCCGCTCGCAGAAGGCATGGCGATTGCTGGCGTTCATGGAGGGAACCCGCCGGTTGGCCGGCAATAGCGCGATCATG
CGCGAAACGCATAATCGAAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Quorum-sensing regulator protein D [H]

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MELKWLEDFVSLAETRSFSRSAESRHVSQPAFSRRIQALEAWLGTELIDRSVYPTRLTQAGQVFLEQALTILSQAHEART
VLRGHAAAPVPTIEFAVPHTLSLTYFPFWLQRIEAKLGPVHTRLRALNVHDAVLSLVEGGCDLVMGYHHPSHPVALDPSR
YDMLTLGMEPISPFSAPLRAGRPRYTLPGGADAAVPYLSYTPNAYLGRMTEVIIANAREPLHLDRVYETDMAEGLKAMAL
AGHGVAFLPHSAVEDAVARGELIRLDRPARAGGAQPFTLTMEIRLYRDKLAVQGDEARQALMRALWDAVVEELAQRAR

Sequences:

>Translated_318_residues
MELKWLEDFVSLAETRSFSRSAESRHVSQPAFSRRIQALEAWLGTELIDRSVYPTRLTQAGQVFLEQALTILSQAHEART
VLRGHAAAPVPTIEFAVPHTLSLTYFPFWLQRIEAKLGPVHTRLRALNVHDAVLSLVEGGCDLVMGYHHPSHPVALDPSR
YDMLTLGMEPISPFSAPLRAGRPRYTLPGGADAAVPYLSYTPNAYLGRMTEVIIANAREPLHLDRVYETDMAEGLKAMAL
AGHGVAFLPHSAVEDAVARGELIRLDRPARAGGAQPFTLTMEIRLYRDKLAVQGDEARQALMRALWDAVVEELAQRAR
>Mature_318_residues
MELKWLEDFVSLAETRSFSRSAESRHVSQPAFSRRIQALEAWLGTELIDRSVYPTRLTQAGQVFLEQALTILSQAHEART
VLRGHAAAPVPTIEFAVPHTLSLTYFPFWLQRIEAKLGPVHTRLRALNVHDAVLSLVEGGCDLVMGYHHPSHPVALDPSR
YDMLTLGMEPISPFSAPLRAGRPRYTLPGGADAAVPYLSYTPNAYLGRMTEVIIANAREPLHLDRVYETDMAEGLKAMAL
AGHGVAFLPHSAVEDAVARGELIRLDRPARAGGAQPFTLTMEIRLYRDKLAVQGDEARQALMRALWDAVVEELAQRAR

Specific function: Down-regulates expression of the flagellar regulon, decreasing motility [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790783, Length=286, Percent_Identity=33.5664335664336, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1787879, Length=267, Percent_Identity=29.5880149812734, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788887, Length=79, Percent_Identity=44.3037974683544, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1790399, Length=74, Percent_Identity=44.5945945945946, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1790208, Length=310, Percent_Identity=25.4838709677419, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35260; Mature: 35260

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELKWLEDFVSLAETRSFSRSAESRHVSQPAFSRRIQALEAWLGTELIDRSVYPTRLTQA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
GQVFLEQALTILSQAHEARTVLRGHAAAPVPTIEFAVPHTLSLTYFPFWLQRIEAKLGPV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEHHHHHHHHHHHHHHHCHH
HTRLRALNVHDAVLSLVEGGCDLVMGYHHPSHPVALDPSRYDMLTLGMEPISPFSAPLRA
HHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEECCCCCCEEEECCCCCCCCHHHHHC
GRPRYTLPGGADAAVPYLSYTPNAYLGRMTEVIIANAREPLHLDRVYETDMAEGLKAMAL
CCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
AGHGVAFLPHSAVEDAVARGELIRLDRPARAGGAQPFTLTMEIRLYRDKLAVQGDEARQA
CCCCEEECCHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEEEEEEEHHHHHCCCHHHHHH
LMRALWDAVVEELAQRAR
HHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MELKWLEDFVSLAETRSFSRSAESRHVSQPAFSRRIQALEAWLGTELIDRSVYPTRLTQA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
GQVFLEQALTILSQAHEARTVLRGHAAAPVPTIEFAVPHTLSLTYFPFWLQRIEAKLGPV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEHHHHHHHHHHHHHHHCHH
HTRLRALNVHDAVLSLVEGGCDLVMGYHHPSHPVALDPSRYDMLTLGMEPISPFSAPLRA
HHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEECCCCCCEEEECCCCCCCCHHHHHC
GRPRYTLPGGADAAVPYLSYTPNAYLGRMTEVIIANAREPLHLDRVYETDMAEGLKAMAL
CCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
AGHGVAFLPHSAVEDAVARGELIRLDRPARAGGAQPFTLTMEIRLYRDKLAVQGDEARQA
CCCCEEECCHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEEEEEEEHHHHHCCCHHHHHH
LMRALWDAVVEELAQRAR
HHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 7876157 [H]