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The map label for this gene is araH [H]

Identifier: 238026191

GI number: 238026191

Start: 550454

End: 551470

Strand: Direct

Name: araH [H]

Synonym: bglu_1g05220

Alternate gene names: 238026191

Gene position: 550454-551470 (Clockwise)

Preceding gene: 238026190

Following gene: 238026192

Centisome position: 14.09

GC content: 65.39

Gene sequence:

>1017_bases
ATGCAAGCCAAGGAAAGTATCACGCAGGCAGCCGCCAAACGCACGGCCGAAGCCTTGATTCCGCAGACCAGCGACCGGCA
GAAGTGGTGGCAGCAGATCACCGACTACAGCCTGATCGTGATCTTCGCGGTGATGTTCATCACCATGTCGGTGACGGTCG
ATCACTTCTTCTCGATCGACAACATGCTCGGGCTCGCGCTGTCGATCTCGCAGATCGGCATGGTCGCCTGCACCATGATG
TTCTGTCTCGCCTCGCGCGACTTCGACCTGTCGATCGGCTCGACGGTGGCGTTCTCGGGCGTGCTCTGCGCGATGGTGCT
CAACGCCACCGACAACACCTTCGTGGCGATCGTCGCGGCAATCGCGGCGGGTGCCGCGATCGGTTTCGTCAACGGCGCGG
TGATCGCCTACCTGCGCATCAACGCGCTGATCACCACGCTCGCCACCATGGAGATCGTGCGCGGGCTCGGCTTCATCGTC
TCGCACGGCCAGGCGGTGGGCGTCTCGTCGGAGACCTTCATCGCGCTGGGCGGCCTCACGCTGTTCGGCGTATCGCTGCC
GATCTGGGTCACGCTGCTCTGCTTCATCGTGTTCGGCGTGCTGCTGAACCAGACCGTCTACGGCCGCAACACGCTGGCGA
TCGGCGGCAATCCGGAAGCCTCGCGCCTGGCCGGCATCAACGTCGAGCGCACGCGCGTCTGGATCTTCCTGATCCAGGGC
GCCGTGACGGCGCTGGCGGGCGTGATCCTCGCCTCGCGGATCACCTCGGGCCAGCCGAACGCGGCCGAGGGCTTCGAGCT
CAACGTGATCTCGGCCTGCGTGCTCGGCGGCGTGTCGCTGCTGGGCGGGCGCGCAACCATCTCGGGCGTGGTGATCGGCG
TGCTGATCATGGGCACGGTCGAGAACGTGATGAACCTGCTCAACATCGACGCGTTCTACCAGTACCTGGTGCGCGGCGCG
ATCCTGCTCGCCGCGGTGCTGCTCGATCAGTTGAAGAACCGCGGCGCGCGCGACTGA

Upstream 100 bases:

>100_bases
CGCAGGGGCCGGCCGAGCAGGCCGCCTGAGCGGCGGGCGCGGGCGAACGAATCAACATGGAGATGGCGCGGCCTGGCCGC
GCGACGCAGGGAGCGACACG

Downstream 100 bases:

>100_bases
CGCGCCGGGAGGAACCCCAGATGAACCAAGCAATGGCGGCCGACGCGGCGCGCGGCGCGCGCTACCCGAGCCTGACCGAT
CGCGCCGTGCTGATCACGGG

Product: L-arabinose transporter permease protein

Products: ADP; phosphate; arabinose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MQAKESITQAAAKRTAEALIPQTSDRQKWWQQITDYSLIVIFAVMFITMSVTVDHFFSIDNMLGLALSISQIGMVACTMM
FCLASRDFDLSIGSTVAFSGVLCAMVLNATDNTFVAIVAAIAAGAAIGFVNGAVIAYLRINALITTLATMEIVRGLGFIV
SHGQAVGVSSETFIALGGLTLFGVSLPIWVTLLCFIVFGVLLNQTVYGRNTLAIGGNPEASRLAGINVERTRVWIFLIQG
AVTALAGVILASRITSGQPNAAEGFELNVISACVLGGVSLLGGRATISGVVIGVLIMGTVENVMNLLNIDAFYQYLVRGA
ILLAAVLLDQLKNRGARD

Sequences:

>Translated_338_residues
MQAKESITQAAAKRTAEALIPQTSDRQKWWQQITDYSLIVIFAVMFITMSVTVDHFFSIDNMLGLALSISQIGMVACTMM
FCLASRDFDLSIGSTVAFSGVLCAMVLNATDNTFVAIVAAIAAGAAIGFVNGAVIAYLRINALITTLATMEIVRGLGFIV
SHGQAVGVSSETFIALGGLTLFGVSLPIWVTLLCFIVFGVLLNQTVYGRNTLAIGGNPEASRLAGINVERTRVWIFLIQG
AVTALAGVILASRITSGQPNAAEGFELNVISACVLGGVSLLGGRATISGVVIGVLIMGTVENVMNLLNIDAFYQYLVRGA
ILLAAVLLDQLKNRGARD
>Mature_338_residues
MQAKESITQAAAKRTAEALIPQTSDRQKWWQQITDYSLIVIFAVMFITMSVTVDHFFSIDNMLGLALSISQIGMVACTMM
FCLASRDFDLSIGSTVAFSGVLCAMVLNATDNTFVAIVAAIAAGAAIGFVNGAVIAYLRINALITTLATMEIVRGLGFIV
SHGQAVGVSSETFIALGGLTLFGVSLPIWVTLLCFIVFGVLLNQTVYGRNTLAIGGNPEASRLAGINVERTRVWIFLIQG
AVTALAGVILASRITSGQPNAAEGFELNVISACVLGGVSLLGGRATISGVVIGVLIMGTVENVMNLLNIDAFYQYLVRGA
ILLAAVLLDQLKNRGARD

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693152, Length=318, Percent_Identity=56.9182389937107, Blast_Score=341, Evalue=5e-95,
Organism=Escherichia coli, GI1790191, Length=312, Percent_Identity=35.5769230769231, Blast_Score=166, Evalue=3e-42,
Organism=Escherichia coli, GI1788896, Length=325, Percent_Identity=31.3846153846154, Blast_Score=159, Evalue=3e-40,
Organism=Escherichia coli, GI1790524, Length=323, Percent_Identity=28.4829721362229, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1789992, Length=132, Percent_Identity=48.4848484848485, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1787793, Length=245, Percent_Identity=35.1020408163265, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1788471, Length=268, Percent_Identity=36.9402985074627, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI87082395, Length=244, Percent_Identity=30.7377049180328, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1787794, Length=265, Percent_Identity=28.3018867924528, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI145693214, Length=287, Percent_Identity=27.1777003484321, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35675; Mature: 35675

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAKESITQAAAKRTAEALIPQTSDRQKWWQQITDYSLIVIFAVMFITMSVTVDHFFSID
CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
NMLGLALSISQIGMVACTMMFCLASRDFDLSIGSTVAFSGVLCAMVLNATDNTFVAIVAA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
IAAGAAIGFVNGAVIAYLRINALITTLATMEIVRGLGFIVSHGQAVGVSSETFIALGGLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEECCHH
LFGVSLPIWVTLLCFIVFGVLLNQTVYGRNTLAIGGNPEASRLAGINVERTRVWIFLIQG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHCCCCEEHHEEEEHHHHH
AVTALAGVILASRITSGQPNAAEGFELNVISACVLGGVSLLGGRATISGVVIGVLIMGTV
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
ENVMNLLNIDAFYQYLVRGAILLAAVLLDQLKNRGARD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQAKESITQAAAKRTAEALIPQTSDRQKWWQQITDYSLIVIFAVMFITMSVTVDHFFSID
CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
NMLGLALSISQIGMVACTMMFCLASRDFDLSIGSTVAFSGVLCAMVLNATDNTFVAIVAA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
IAAGAAIGFVNGAVIAYLRINALITTLATMEIVRGLGFIVSHGQAVGVSSETFIALGGLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEECCHH
LFGVSLPIWVTLLCFIVFGVLLNQTVYGRNTLAIGGNPEASRLAGINVERTRVWIFLIQG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHCCCCEEHHEEEEHHHHH
AVTALAGVILASRITSGQPNAAEGFELNVISACVLGGVSLLGGRATISGVVIGVLIMGTV
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
ENVMNLLNIDAFYQYLVRGAILLAAVLLDQLKNRGARD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; arabinose [Periplasm]; H2O [C]

Specific reaction: ATP + arabinose [Periplasm] + H2O = ADP + phosphate + arabinose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2445996; 9097040; 9278503; 8045430 [H]