| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238026173
Identifier: 238026173
GI number: 238026173
Start: 531488
End: 532882
Strand: Reverse
Name: 238026173
Synonym: bglu_1g05040
Alternate gene names: NA
Gene position: 532882-531488 (Counterclockwise)
Preceding gene: 238026174
Following gene: 238026172
Centisome position: 13.64
GC content: 76.27
Gene sequence:
>1395_bases ATGCCCCTCGCGACGCGCTGCCCTCACTGTGAAACCGTCTTCCGGATCAGCCCCGAGCATCTGAAGCTGCACGGCGGCCT GGCACGTTGCGGCCACTGTCAGCAGGTGTTCGACGCAGTGAATGCACTCGTCGACCCCGATTCCGAACTCGCCCCGCCGG CCGCCGAGCCGGCCTCCACGGCGGGCGCCGCACCGCCCCCGCCGCGCGTGTTCCCGGCCACCGCGCCGCACGCCGCGACC ACGCCCCCGATGGGCGCCAGCTTCGAGCCCGGCGCCTGGGACATGCGGGCGCCGTGGCTCGACGGCGGCATCGATCCGAC GCTGCGCCACCACGGCGGCAACACCGGCCCGGCCCCGCTCCTGCCGGTCGCCGCCGCCGCCGCGCGCGAAGTGCCCGCCA ATGAGGCCGGCTTGGCCCGCGGCGAACCTGTCGTGCCGCCCGCCTCCGGATCGGCCCCCGTCGCCACGCCCGCGGCCGAT CCTGCATCCGAGCGCGTACCGGGGCCCTTGCCCGCGCCCGCATCCGAACCCGTAGCCGAATCCGCGGCCGCCCCCGCACG CGAGCCTGCCCCGGCACCGGCGGACGCAACGCCCGCGGCGCCGGCCGACCACGGCCCCGGGTCCGGCCTCGCCGCGCCGG CGCATGGCGCGAGCGACGCCGATCTCGCGGGGCTCGTTGCCGCGCTGCCGCGCGCCATGGCCGAGCCTTCGTTCGGCGCC GCGCCGCCCGCCGGTGGGCACGACGACGGGGCCCGCGCCCCCCGCGGCGGCGCCGAGTCCGGCGCGCCTGGCATGCCGCC CCGTGAAACCGAGCCGTTCGCGGTCGAACCGGAGCAGGACGATCGCATCCATTTCGCGATGACGCGCGAGTCGCCGGCCG GCCGGCGCGGCAGCAACGGCCGGCAGATGCTCGGCGGCTTCCTGGCGGGACTGCTGATCGTGGTGCTGGCCGGCCAGCTC GCCTGGTGGCTGCGCGAGCCGCTGCTGACGAACTGGCCGGCGGCTCAGCCGCTGTTCGCGCGGGCCTGCGCTGCGCTGGG CTGCACGGTCGAGCCACCGCGCGCGATCGACGGCCTGCGGCTCGGCGCGTCCGACCTGCGCCAGCTAGACGGCCCGCGCG TGCTCGAACTGAAGGTGCCGCTGTCGAACCACGCTGCGCTCGCGCTCGCCTATCCCTCGATCGAGCTGACGCTGCTCGAC GCATCGAACCACGTGGCCGCGCGCCGCGTGCTCGCGCCCGCCGACTACGTCCCTCCCGGCACGCGCATCGAGGCGGGCCT CGCCGCCGGCACGACCGAAACGATGTTCGTGCGAATCGACACGGCGCCCGGCGCCGCCGATGGCGCACCCGGCATCGCCG CCTCGAACTTCCGCGTCCAGATTTTCTACCCGTGA
Upstream 100 bases:
>100_bases GCGCGAACACGAAGGCTGGGTCTGTCTGGCCGGAACACGACGCGAAAGCCATTAGAATAGGGGCTGTCCACCACTCCGGC CCCCGTGCTGACCGGCCATC
Downstream 100 bases:
>100_bases CGGGTCCGTCGCGGCCCCGTCCTGCACGGCGCGCCCGCATGGCGCGCCGGCCTCAACCTCGGCGTCGCACGACGCCCCTC TCCGGAGTAAGAATATGAGC
Product: zinc finger/thioredoxin domain-containing protein
Products: NA
Alternate protein names: Zinc Finger/Thioredoxin; Zinc Finger/Thioredoxin Domain Protein; Transmembrane Protein; FHA Domain-Containing Protein
Number of amino acids: Translated: 464; Mature: 463
Protein sequence:
>464_residues MPLATRCPHCETVFRISPEHLKLHGGLARCGHCQQVFDAVNALVDPDSELAPPAAEPASTAGAAPPPPRVFPATAPHAAT TPPMGASFEPGAWDMRAPWLDGGIDPTLRHHGGNTGPAPLLPVAAAAAREVPANEAGLARGEPVVPPASGSAPVATPAAD PASERVPGPLPAPASEPVAESAAAPAREPAPAPADATPAAPADHGPGSGLAAPAHGASDADLAGLVAALPRAMAEPSFGA APPAGGHDDGARAPRGGAESGAPGMPPRETEPFAVEPEQDDRIHFAMTRESPAGRRGSNGRQMLGGFLAGLLIVVLAGQL AWWLREPLLTNWPAAQPLFARACAALGCTVEPPRAIDGLRLGASDLRQLDGPRVLELKVPLSNHAALALAYPSIELTLLD ASNHVAARRVLAPADYVPPGTRIEAGLAAGTTETMFVRIDTAPGAADGAPGIAASNFRVQIFYP
Sequences:
>Translated_464_residues MPLATRCPHCETVFRISPEHLKLHGGLARCGHCQQVFDAVNALVDPDSELAPPAAEPASTAGAAPPPPRVFPATAPHAAT TPPMGASFEPGAWDMRAPWLDGGIDPTLRHHGGNTGPAPLLPVAAAAAREVPANEAGLARGEPVVPPASGSAPVATPAAD PASERVPGPLPAPASEPVAESAAAPAREPAPAPADATPAAPADHGPGSGLAAPAHGASDADLAGLVAALPRAMAEPSFGA APPAGGHDDGARAPRGGAESGAPGMPPRETEPFAVEPEQDDRIHFAMTRESPAGRRGSNGRQMLGGFLAGLLIVVLAGQL AWWLREPLLTNWPAAQPLFARACAALGCTVEPPRAIDGLRLGASDLRQLDGPRVLELKVPLSNHAALALAYPSIELTLLD ASNHVAARRVLAPADYVPPGTRIEAGLAAGTTETMFVRIDTAPGAADGAPGIAASNFRVQIFYP >Mature_463_residues PLATRCPHCETVFRISPEHLKLHGGLARCGHCQQVFDAVNALVDPDSELAPPAAEPASTAGAAPPPPRVFPATAPHAATT PPMGASFEPGAWDMRAPWLDGGIDPTLRHHGGNTGPAPLLPVAAAAAREVPANEAGLARGEPVVPPASGSAPVATPAADP ASERVPGPLPAPASEPVAESAAAPAREPAPAPADATPAAPADHGPGSGLAAPAHGASDADLAGLVAALPRAMAEPSFGAA PPAGGHDDGARAPRGGAESGAPGMPPRETEPFAVEPEQDDRIHFAMTRESPAGRRGSNGRQMLGGFLAGLLIVVLAGQLA WWLREPLLTNWPAAQPLFARACAALGCTVEPPRAIDGLRLGASDLRQLDGPRVLELKVPLSNHAALALAYPSIELTLLDA SNHVAARRVLAPADYVPPGTRIEAGLAAGTTETMFVRIDTAPGAADGAPGIAASNFRVQIFYP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47010; Mature: 46879
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLATRCPHCETVFRISPEHLKLHGGLARCGHCQQVFDAVNALVDPDSELAPPAAEPAST CCCCCCCCCCCCEEEECHHHEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC AGAAPPPPRVFPATAPHAATTPPMGASFEPGAWDMRAPWLDGGIDPTLRHHGGNTGPAPL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCH LPVAAAAAREVPANEAGLARGEPVVPPASGSAPVATPAADPASERVPGPLPAPASEPVAE HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH SAAAPAREPAPAPADATPAAPADHGPGSGLAAPAHGASDADLAGLVAALPRAMAEPSFGA HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC APPAGGHDDGARAPRGGAESGAPGMPPRETEPFAVEPEQDDRIHFAMTRESPAGRRGSNG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCCCCCCCCCH RQMLGGFLAGLLIVVLAGQLAWWLREPLLTNWPAAQPLFARACAALGCTVEPPRAIDGLR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHCCCC LGASDLRQLDGPRVLELKVPLSNHAALALAYPSIELTLLDASNHVAARRVLAPADYVPPG CCHHHHHHCCCCEEEEEECCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHCCCCCCCCC TRIEAGLAAGTTETMFVRIDTAPGAADGAPGIAASNFRVQIFYP CEEECCCCCCCCEEEEEEEECCCCCCCCCCCCEECCEEEEEECC >Mature Secondary Structure PLATRCPHCETVFRISPEHLKLHGGLARCGHCQQVFDAVNALVDPDSELAPPAAEPAST CCCCCCCCCCCEEEECHHHEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC AGAAPPPPRVFPATAPHAATTPPMGASFEPGAWDMRAPWLDGGIDPTLRHHGGNTGPAPL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCH LPVAAAAAREVPANEAGLARGEPVVPPASGSAPVATPAADPASERVPGPLPAPASEPVAE HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH SAAAPAREPAPAPADATPAAPADHGPGSGLAAPAHGASDADLAGLVAALPRAMAEPSFGA HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC APPAGGHDDGARAPRGGAESGAPGMPPRETEPFAVEPEQDDRIHFAMTRESPAGRRGSNG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCCCCCCCCCH RQMLGGFLAGLLIVVLAGQLAWWLREPLLTNWPAAQPLFARACAALGCTVEPPRAIDGLR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHCCCC LGASDLRQLDGPRVLELKVPLSNHAALALAYPSIELTLLDASNHVAARRVLAPADYVPPG CCHHHHHHCCCCEEEEEECCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHCCCCCCCCC TRIEAGLAAGTTETMFVRIDTAPGAADGAPGIAASNFRVQIFYP CEEECCCCCCCCEEEEEEEECCCCCCCCCCCCEECCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA