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The map label for this gene is ypjD [C]

Identifier: 238026163

GI number: 238026163

Start: 521224

End: 522123

Strand: Direct

Name: ypjD [C]

Synonym: bglu_1g04930

Alternate gene names: 238026163

Gene position: 521224-522123 (Clockwise)

Preceding gene: 238026160

Following gene: 238026164

Centisome position: 13.34

GC content: 69.11

Gene sequence:

>900_bases
ATGGATATTGTACTGTATGCCCTCACCGCGCTCCTGTACGGCGGCCTGGCCGTCGCGGGATGGCGGGCGCACCGTTCCGG
CCTCGTGCAGCCGCTCGCCGCGAGCGTGCCGCCGGTGCCGGGCGAGCCCGGCGCGCCGGCCACCGCCGTGGGTGGTGCGG
ACCGCGCGTTGTTGTTCGCCGCGCTGCTCGCGCATGGCGTGCTGCTGCATGCCACGATCTTTCCGCACGATGCAATGGTG
TTCGGCTTCGCGTTCGCGCTCTCGGCGATGTTCTGGCTCGGCGCGGGTATCTATTGGATCGAGAGCTTCTTCTTTCCGCT
CGACGGCCTGCGCCTGCTGGTGCTGCCGCTGGCCTGCCTCGCCTCGCTGCTGCCGCTCGTGTTCGGCGGCGTGCGGGTGC
TGCCCTATGCCGCCGCGCCGCTGTTCAAGATGCACTTCCTGATCGCGAACATCGCCTATGGCTTGTTCGTGATCGCGGCC
CTGCACGCGGTGCTGATGCTGATGACCGAGCGGCGTCTGCAGGCGCTGCGGCAGGGCGGCAGGATCGGCTCGGCGGGCGT
GTTGACGAGCTGGCTCGAAACGCTGCCGCCGCTGCTCACGCTCGAGAAGCTGCTGTTCCGCCTGATCGGCGCCGGCTTCG
TGCTGCTCACGCTGACGCTCGCCTCGGGCATCCTGTTCAGCGAGCAGGTCGATGCGCGCGCTTTGCGCTTCGACCATAAG
ACGGTGTTCGCGATCCTCTCGTGGTGCATGTTCGGCGGTATTCTTGTCGCGCGTCGGCTGTCCGGCTGGCGCGGGCGCGG
CGCCGCGCGCTGGGTGCTCGCCTCGTTCGGCGCGCTGCTGCTCGCCTACGTCGGCAGCCGTTTCGTGCTCGAGGTGCTGC
TGCACCGTCCCGTGGTCTGA

Upstream 100 bases:

>100_bases
GATTGTCGAGCATGGGGAGCGATGGACAGTGGGGCCCGAAGGCGCGCGTGCTATATATTGACAGCCGTCGCGTGCAAGGG
GCCTAGTGTAAACTTCGAAC

Downstream 100 bases:

>100_bases
TGGTCTCAAAGCGATGCGTAACCTTCTGCTGTTGATTCTCCTGTTCATTGCCGGCTCCTGGGTCTCGCGCAAGCTGCGTC
AGGCGCAGGAGCGCGCGAAT

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: ORF5 [H]

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MDIVLYALTALLYGGLAVAGWRAHRSGLVQPLAASVPPVPGEPGAPATAVGGADRALLFAALLAHGVLLHATIFPHDAMV
FGFAFALSAMFWLGAGIYWIESFFFPLDGLRLLVLPLACLASLLPLVFGGVRVLPYAAAPLFKMHFLIANIAYGLFVIAA
LHAVLMLMTERRLQALRQGGRIGSAGVLTSWLETLPPLLTLEKLLFRLIGAGFVLLTLTLASGILFSEQVDARALRFDHK
TVFAILSWCMFGGILVARRLSGWRGRGAARWVLASFGALLLAYVGSRFVLEVLLHRPVV

Sequences:

>Translated_299_residues
MDIVLYALTALLYGGLAVAGWRAHRSGLVQPLAASVPPVPGEPGAPATAVGGADRALLFAALLAHGVLLHATIFPHDAMV
FGFAFALSAMFWLGAGIYWIESFFFPLDGLRLLVLPLACLASLLPLVFGGVRVLPYAAAPLFKMHFLIANIAYGLFVIAA
LHAVLMLMTERRLQALRQGGRIGSAGVLTSWLETLPPLLTLEKLLFRLIGAGFVLLTLTLASGILFSEQVDARALRFDHK
TVFAILSWCMFGGILVARRLSGWRGRGAARWVLASFGALLLAYVGSRFVLEVLLHRPVV
>Mature_299_residues
MDIVLYALTALLYGGLAVAGWRAHRSGLVQPLAASVPPVPGEPGAPATAVGGADRALLFAALLAHGVLLHATIFPHDAMV
FGFAFALSAMFWLGAGIYWIESFFFPLDGLRLLVLPLACLASLLPLVFGGVRVLPYAAAPLFKMHFLIANIAYGLFVIAA
LHAVLMLMTERRLQALRQGGRIGSAGVLTSWLETLPPLLTLEKLLFRLIGAGFVLLTLTLASGILFSEQVDARALRFDHK
TVFAILSWCMFGGILVARRLSGWRGRGAARWVLASFGALLLAYVGSRFVLEVLLHRPVV

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 32138; Mature: 32138

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIVLYALTALLYGGLAVAGWRAHRSGLVQPLAASVPPVPGEPGAPATAVGGADRALLFA
CHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
ALLAHGVLLHATIFPHDAMVFGFAFALSAMFWLGAGIYWIESFFFPLDGLRLLVLPLACL
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
ASLLPLVFGGVRVLPYAAAPLFKMHFLIANIAYGLFVIAALHAVLMLMTERRLQALRQGG
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RIGSAGVLTSWLETLPPLLTLEKLLFRLIGAGFVLLTLTLASGILFSEQVDARALRFDHK
CCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVFAILSWCMFGGILVARRLSGWRGRGAARWVLASFGALLLAYVGSRFVLEVLLHRPVV
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDIVLYALTALLYGGLAVAGWRAHRSGLVQPLAASVPPVPGEPGAPATAVGGADRALLFA
CHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
ALLAHGVLLHATIFPHDAMVFGFAFALSAMFWLGAGIYWIESFFFPLDGLRLLVLPLACL
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
ASLLPLVFGGVRVLPYAAAPLFKMHFLIANIAYGLFVIAALHAVLMLMTERRLQALRQGG
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RIGSAGVLTSWLETLPPLLTLEKLLFRLIGAGFVLLTLTLASGILFSEQVDARALRFDHK
CCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVFAILSWCMFGGILVARRLSGWRGRGAARWVLASFGALLLAYVGSRFVLEVLLHRPVV
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7553451 [H]