| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
Click here to switch to the map view.
The map label for this gene is obg [H]
Identifier: 238026155
GI number: 238026155
Start: 512553
End: 513674
Strand: Direct
Name: obg [H]
Synonym: bglu_1g04850
Alternate gene names: 238026155
Gene position: 512553-513674 (Clockwise)
Preceding gene: 238026154
Following gene: 238026156
Centisome position: 13.12
GC content: 68.45
Gene sequence:
>1122_bases ATGAAGTTCATTGACGAAGCGCGAATCGAGGTCATCGCCGGCGACGGAGGCGATGGCAGCGCGTCGATGCGCCGCGAGAA GTTCGTTCCGTTCGGCGGGCCGGACGGCGGCGACGGCGGCCGGGGCGGCAGCGTCTACGCGGTCGCGGATCGCAACATCA ACACGCTGATCGATTATCGATACGCGAAGAAGCACCTGGCGCGCAACGGCGAGAACGGCCGCGGCTCCGACTGCTATGGC AAGGGCGGCGACGACATCACGCTGCGCATGCCGGTCGGCACCGTCATCACCGACCTGGACACGGGCGAACTGATCGCCGA CCTGACCGAGCACGAGCAGAAGGTGCTCGTCGCGCAGGGCGGCGCGGGCGGCCTCGGCAACCTGCACTTCAAGTCGAGCA CGAACCGCGCGCCGCGCCAGAAGACCGAAGGCAAGCCCGGCGAGCGCCGCATGCTGCGGCTCGAGCTCAAGGTGCTGGCC GATGTCGGCCTGCTCGGCATGCCGAATGCGGGCAAGTCCACCTTCATCTCGTCGGTGTCGAACGCGAAGCCGAAGATCGC CGACTACCCGTTCACGACGCTCGCGCCGAATCTCGGCGTGGTGCGCGTGGGGCCGAGCAAGAGCTTCGTGATCGCCGACA TTCCGGGCCTGATCGAAGGCGCCGCCGAGGGCGCGGGCCTCGGCCACCAGTTCCTGCGCCACCTCCAGCGCACCGGCGTG CTGCTGCATCTGGTCGATCTGGCGCCGTTCGACGAAGGTGTCGATCCCGTGGCGGAAGCGACGGCGATCGTCGGCGAACT GCGCAAGTACGATGAAGCGCTCTACCAGAAGCCGCGCTGGCTCGTGCTGAACAAGCTCGACATGGTGCCGGAGGACGAAC GCGCCGCGCGTGTTGCCGATTTCGTCAGCCGCTTCGGCTGGGACGGCCCGGTGTTCGAGATTTCCGCACTGACGGGGCAG GGCTGCGAGAACCTCGTCTATGCCGTCTATGACTACCTCGTCGAGCATTCGGACGCGCATCGCGCCTCCGAGGCCGAGGA CCTGGCCGCCGACGTGCGCTTTCGCGACGCCCCCGCGCCGGGTGGCGGCGAGGCGCCGCCGGAGCCCGAAGCCGGCGACT GA
Upstream 100 bases:
>100_bases TTCCGATCCGGGCCGGCGCGGCAACCTGGCCGCACGGCCGATTGGTCAAGCGCGGCGCCACGCGGCACAATATTGGATCA ATTCAGGCGGAGCTTGACGG
Downstream 100 bases:
>100_bases ACCGGCCGCCGGGCCATTAACCGGGCTTGGCCGACGCGGCATCCGAACCGGCGCGTGCCTCGGCCGATGGACGGCGAGCC CGCGCCGGCGCCGGTCCGAC
Product: GTPase CgtA
Products: NA
Alternate protein names: GTP-binding protein obg [H]
Number of amino acids: Translated: 373; Mature: 373
Protein sequence:
>373_residues MKFIDEARIEVIAGDGGDGSASMRREKFVPFGGPDGGDGGRGGSVYAVADRNINTLIDYRYAKKHLARNGENGRGSDCYG KGGDDITLRMPVGTVITDLDTGELIADLTEHEQKVLVAQGGAGGLGNLHFKSSTNRAPRQKTEGKPGERRMLRLELKVLA DVGLLGMPNAGKSTFISSVSNAKPKIADYPFTTLAPNLGVVRVGPSKSFVIADIPGLIEGAAEGAGLGHQFLRHLQRTGV LLHLVDLAPFDEGVDPVAEATAIVGELRKYDEALYQKPRWLVLNKLDMVPEDERAARVADFVSRFGWDGPVFEISALTGQ GCENLVYAVYDYLVEHSDAHRASEAEDLAADVRFRDAPAPGGGEAPPEPEAGD
Sequences:
>Translated_373_residues MKFIDEARIEVIAGDGGDGSASMRREKFVPFGGPDGGDGGRGGSVYAVADRNINTLIDYRYAKKHLARNGENGRGSDCYG KGGDDITLRMPVGTVITDLDTGELIADLTEHEQKVLVAQGGAGGLGNLHFKSSTNRAPRQKTEGKPGERRMLRLELKVLA DVGLLGMPNAGKSTFISSVSNAKPKIADYPFTTLAPNLGVVRVGPSKSFVIADIPGLIEGAAEGAGLGHQFLRHLQRTGV LLHLVDLAPFDEGVDPVAEATAIVGELRKYDEALYQKPRWLVLNKLDMVPEDERAARVADFVSRFGWDGPVFEISALTGQ GCENLVYAVYDYLVEHSDAHRASEAEDLAADVRFRDAPAPGGGEAPPEPEAGD >Mature_373_residues MKFIDEARIEVIAGDGGDGSASMRREKFVPFGGPDGGDGGRGGSVYAVADRNINTLIDYRYAKKHLARNGENGRGSDCYG KGGDDITLRMPVGTVITDLDTGELIADLTEHEQKVLVAQGGAGGLGNLHFKSSTNRAPRQKTEGKPGERRMLRLELKVLA DVGLLGMPNAGKSTFISSVSNAKPKIADYPFTTLAPNLGVVRVGPSKSFVIADIPGLIEGAAEGAGLGHQFLRHLQRTGV LLHLVDLAPFDEGVDPVAEATAIVGELRKYDEALYQKPRWLVLNKLDMVPEDERAARVADFVSRFGWDGPVFEISALTGQ GCENLVYAVYDYLVEHSDAHRASEAEDLAADVRFRDAPAPGGGEAPPEPEAGD
Specific function: An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in t
COG id: COG0536
COG function: function code R; Predicted GTPase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI24308117, Length=336, Percent_Identity=38.9880952380952, Blast_Score=187, Evalue=1e-47, Organism=Homo sapiens, GI111955139, Length=359, Percent_Identity=35.933147632312, Blast_Score=176, Evalue=4e-44, Organism=Homo sapiens, GI111955063, Length=193, Percent_Identity=37.8238341968912, Blast_Score=116, Evalue=4e-26, Organism=Homo sapiens, GI58761500, Length=136, Percent_Identity=31.6176470588235, Blast_Score=72, Evalue=1e-12, Organism=Escherichia coli, GI1789574, Length=336, Percent_Identity=58.3333333333333, Blast_Score=366, Evalue=1e-102, Organism=Escherichia coli, GI1787454, Length=100, Percent_Identity=36, Blast_Score=69, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17508313, Length=327, Percent_Identity=38.2262996941896, Blast_Score=155, Evalue=4e-38, Organism=Caenorhabditis elegans, GI17552324, Length=313, Percent_Identity=30.9904153354633, Blast_Score=130, Evalue=1e-30, Organism=Caenorhabditis elegans, GI17509631, Length=128, Percent_Identity=34.375, Blast_Score=74, Evalue=9e-14, Organism=Saccharomyces cerevisiae, GI6321962, Length=197, Percent_Identity=37.5634517766497, Blast_Score=124, Evalue=3e-29, Organism=Saccharomyces cerevisiae, GI6321773, Length=155, Percent_Identity=29.0322580645161, Blast_Score=64, Evalue=3e-11, Organism=Drosophila melanogaster, GI24585318, Length=312, Percent_Identity=40.7051282051282, Blast_Score=179, Evalue=4e-45, Organism=Drosophila melanogaster, GI20129375, Length=341, Percent_Identity=36.3636363636364, Blast_Score=155, Evalue=5e-38, Organism=Drosophila melanogaster, GI24640873, Length=134, Percent_Identity=34.3283582089552, Blast_Score=75, Evalue=8e-14, Organism=Drosophila melanogaster, GI24640877, Length=134, Percent_Identity=34.3283582089552, Blast_Score=75, Evalue=8e-14, Organism=Drosophila melanogaster, GI24640875, Length=134, Percent_Identity=34.3283582089552, Blast_Score=75, Evalue=8e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014100 - InterPro: IPR006074 - InterPro: IPR006073 - InterPro: IPR006169 - InterPro: IPR002917 - InterPro: IPR005225 [H]
Pfam domain/function: PF01018 GTP1_OBG; PF01926 MMR_HSR1 [H]
EC number: NA
Molecular weight: Translated: 39850; Mature: 39850
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: PS00905 GTP1_OBG
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFIDEARIEVIAGDGGDGSASMRREKFVPFGGPDGGDGGRGGSVYAVADRNINTLIDYR CCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHH YAKKHLARNGENGRGSDCYGKGGDDITLRMPVGTVITDLDTGELIADLTEHEQKVLVAQG HHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCEEECCCCHHHHHHHHHCCCEEEEEEC GAGGLGNLHFKSSTNRAPRQKTEGKPGERRMLRLELKVLADVGLLGMPNAGKSTFISSVS CCCCCCCEEECCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH NAKPKIADYPFTTLAPNLGVVRVGPSKSFVIADIPGLIEGAAEGAGLGHQFLRHLQRTGV CCCCCCCCCCHHHHCCCCCEEEECCCCCEEEEECCHHHHHHHCCCCHHHHHHHHHHHCCE LLHLVDLAPFDEGVDPVAEATAIVGELRKYDEALYQKPRWLVLNKLDMVPEDERAARVAD EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCCCHHHHHHHHH FVSRFGWDGPVFEISALTGQGCENLVYAVYDYLVEHSDAHRASEAEDLAADVRFRDAPAP HHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCEEECCCCC GGGEAPPEPEAGD CCCCCCCCCCCCC >Mature Secondary Structure MKFIDEARIEVIAGDGGDGSASMRREKFVPFGGPDGGDGGRGGSVYAVADRNINTLIDYR CCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHH YAKKHLARNGENGRGSDCYGKGGDDITLRMPVGTVITDLDTGELIADLTEHEQKVLVAQG HHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCEEECCCCHHHHHHHHHCCCEEEEEEC GAGGLGNLHFKSSTNRAPRQKTEGKPGERRMLRLELKVLADVGLLGMPNAGKSTFISSVS CCCCCCCEEECCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH NAKPKIADYPFTTLAPNLGVVRVGPSKSFVIADIPGLIEGAAEGAGLGHQFLRHLQRTGV CCCCCCCCCCHHHHCCCCCEEEECCCCCEEEEECCHHHHHHHCCCCHHHHHHHHHHHCCE LLHLVDLAPFDEGVDPVAEATAIVGELRKYDEALYQKPRWLVLNKLDMVPEDERAARVAD EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCCCHHHHHHHHH FVSRFGWDGPVFEISALTGQGCENLVYAVYDYLVEHSDAHRASEAEDLAADVRFRDAPAP HHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCEEECCCCC GGGEAPPEPEAGD CCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA