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The map label for this gene is ygiD [H]

Identifier: 238026088

GI number: 238026088

Start: 434074

End: 434865

Strand: Reverse

Name: ygiD [H]

Synonym: bglu_1g04160

Alternate gene names: 238026088

Gene position: 434865-434074 (Counterclockwise)

Preceding gene: 238026089

Following gene: 238026086

Centisome position: 11.13

GC content: 73.23

Gene sequence:

>792_bases
ATGAGCCGCCTTCCCTCGCTCTACCTGTCCCACGGCGCGCCGACGCTGCCGATCGACCCGTCCCTGCCTGCGCCGGCCTT
CACGCAGTTGGGCGCCGAACTGCCGCGCCCGCGCGCGGTGCTGATGCTGTCCGCGCACTGGTGCACGCTCGCGCCGGCCG
CCAGCATCGCGACGCGGCCCGACACGATCCACGATTTCCACGGCTTCCCGCGCGAGCTCTACGCGCTGCGCTACCCGGCG
CCCGGAGCGCCCGAGCTGGCGCGCCAGGCGGCGGCGCGGCTCGGCGGGGCCGGCATCGCCGCCACCACCACCGAATACGG
GCTCGATCACGGCGCCTGGGTGCCGATGCTGCTGATGTTTCCCGAGGCCGACATCCCCGTGGCGCAGCTGTCGATCCAGC
CGCGCTCGGACGCCGCGCACCACTTCCGGGTCGGCCGCGCGCTGCGTTCGCTGCGCGACGAGGGCGTGATGGTGATCGGC
TCCGGCCAGATCACGCACAACCTGCGCGAGGCCGATTTCGGCGCGACGCCGGCCGACGCCGATCCGCGCGTCGACGAATT
CACCAGCTGGTTCGAGGAACGGCTCGCGCGGCGCGAGATCGACTCGCTGCTCGACTATCGCCGGCTGGCGCCGCACGCGC
AGCGCATGCATCCGACCGACGAGCACCTGCTGCCGGTGTTCGCGGCGCTCGGCGCGGCCGACGACGACTACCGCCTCGGC
ATCCAGGCGCTCGGCACCTACCAGCGCGTGCTGGCGATGACGAACTACGTGTTCGCCCCCGGCGCGACCTGA

Upstream 100 bases:

>100_bases
ATTGACAACCGTTGGGAATCAATCAAATCCTTCCAGGCCGATTTATCGAAGGACCGCGAACGCCTATAGTCGCAGTCGTC
ACGATTCCCGGTCCCCCGCC

Downstream 100 bases:

>100_bases
GCGCCGTCGGCTCACCATGCAAAAAGCCCGCCCGGGCGTGCCGGGCGGGCTTTTTTTTACCGCCGCACCGCGCCTGACGG
CGGGTGCGGCGAGCGCAGCG

Product: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MSRLPSLYLSHGAPTLPIDPSLPAPAFTQLGAELPRPRAVLMLSAHWCTLAPAASIATRPDTIHDFHGFPRELYALRYPA
PGAPELARQAAARLGGAGIAATTTEYGLDHGAWVPMLLMFPEADIPVAQLSIQPRSDAAHHFRVGRALRSLRDEGVMVIG
SGQITHNLREADFGATPADADPRVDEFTSWFEERLARREIDSLLDYRRLAPHAQRMHPTDEHLLPVFAALGAADDDYRLG
IQALGTYQRVLAMTNYVFAPGAT

Sequences:

>Translated_263_residues
MSRLPSLYLSHGAPTLPIDPSLPAPAFTQLGAELPRPRAVLMLSAHWCTLAPAASIATRPDTIHDFHGFPRELYALRYPA
PGAPELARQAAARLGGAGIAATTTEYGLDHGAWVPMLLMFPEADIPVAQLSIQPRSDAAHHFRVGRALRSLRDEGVMVIG
SGQITHNLREADFGATPADADPRVDEFTSWFEERLARREIDSLLDYRRLAPHAQRMHPTDEHLLPVFAALGAADDDYRLG
IQALGTYQRVLAMTNYVFAPGAT
>Mature_262_residues
SRLPSLYLSHGAPTLPIDPSLPAPAFTQLGAELPRPRAVLMLSAHWCTLAPAASIATRPDTIHDFHGFPRELYALRYPAP
GAPELARQAAARLGGAGIAATTTEYGLDHGAWVPMLLMFPEADIPVAQLSIQPRSDAAHHFRVGRALRSLRDEGVMVIGS
GQITHNLREADFGATPADADPRVDEFTSWFEERLARREIDSLLDYRRLAPHAQRMHPTDEHLLPVFAALGAADDDYRLGI
QALGTYQRVLAMTNYVFAPGAT

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=255, Percent_Identity=36.8627450980392, Blast_Score=171, Evalue=3e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 28700; Mature: 28569

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRLPSLYLSHGAPTLPIDPSLPAPAFTQLGAELPRPRAVLMLSAHWCTLAPAASIATRP
CCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCHHHHCCHHHHCCCC
DTIHDFHGFPRELYALRYPAPGAPELARQAAARLGGAGIAATTTEYGLDHGAWVPMLLMF
CCHHHHCCCCHHHHEEECCCCCCHHHHHHHHHHHCCCCCEECHHHHCCCCCCHHHHHEEC
PEADIPVAQLSIQPRSDAAHHFRVGRALRSLRDEGVMVIGSGQITHNLREADFGATPADA
CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHCCCCCCCCC
DPRVDEFTSWFEERLARREIDSLLDYRRLAPHAQRMHPTDEHLLPVFAALGAADDDYRLG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHCCCCCCHHHH
IQALGTYQRVLAMTNYVFAPGAT
HHHHHHHHHHHHHHHHEECCCCC
>Mature Secondary Structure 
SRLPSLYLSHGAPTLPIDPSLPAPAFTQLGAELPRPRAVLMLSAHWCTLAPAASIATRP
CCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCHHHHCCHHHHCCCC
DTIHDFHGFPRELYALRYPAPGAPELARQAAARLGGAGIAATTTEYGLDHGAWVPMLLMF
CCHHHHCCCCHHHHEEECCCCCCHHHHHHHHHHHCCCCCEECHHHHCCCCCCHHHHHEEC
PEADIPVAQLSIQPRSDAAHHFRVGRALRSLRDEGVMVIGSGQITHNLREADFGATPADA
CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHCCCCCCCCC
DPRVDEFTSWFEERLARREIDSLLDYRRLAPHAQRMHPTDEHLLPVFAALGAADDDYRLG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHCCCCCCHHHH
IQALGTYQRVLAMTNYVFAPGAT
HHHHHHHHHHHHHHHHEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]