| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238026072
Identifier: 238026072
GI number: 238026072
Start: 417703
End: 418554
Strand: Reverse
Name: 238026072
Synonym: bglu_1g04000
Alternate gene names: NA
Gene position: 418554-417703 (Counterclockwise)
Preceding gene: 238026075
Following gene: 238026071
Centisome position: 10.71
GC content: 60.92
Gene sequence:
>852_bases GTGATTGCCGTCGTCCTGATCGCGTATTTCGCCATCGCCGTGCTGGCCGCCGCCTTGTTCCTGTTGCCGGGCGTTCGGGC CAGCCTGTTCGGCTCGGTGGCGCAGTTTCACGGAAGATTAAGCCGGCGCGTTTCGGACCGAGCGCAGCGCACTCGCGGCC ATATTCTCAAATCGGCAAAAATTTCGCGAAACTCTTTAAGCGATCTGCAAAATTTACTGATTCGGCGACGCTTGCTGATT ATGGGCGCGGCAGGTATTCTTGCGACGCCTCCGTTGATCGCGATTGCGTTACGCGGTCGGCAATTATTCCAATACGACGA CACCATACGCGTTCCCGACGAAAAGATCGCCGCGCTGCTGCAAGGCGAACAGCTCGTCCCGCCGTTGCCGCTGCCGCCCG AAGTCTTCGCCACCCGCGAAGTCGAGCAGATCCGGCCCGCGCTGAAGGATGCGAGTCGCGACTGGAACTTGCTCGATCCG GATTTCCGCACGCGCTTGCTGCTCGTCTACAAGATCATGCACGAGCAGTACGGATACGAAATGGCGCTGCTCGAAGGCTA TCGCAGTCCCGAACGGCAGAACCGGCTTGCCCAGATGGGCACGAACGTGACGAACGCGGCCGCGTACCAGAGCTATCACC AGTTCGGTCTCGCGGCCGACAACGCGTTCCTGCGCGACGGCAAGCTGGTGATCTCCGAGAAGGACCCGTGGGCCATGCGC GGTTATCAGCTGTACGGTCAGGTCGCCGAGCAGGTGGGCCTGACCTGGGGTGGCCGATGGAAGATGATGGACCTCGGACA CGTCGAATTCCATAAACCCGGCTTCAAGCTGGGACATCCGCCGCCACAGTGA
Upstream 100 bases:
>100_bases TTAATTCGCAGCAATAATATCGCCCGGCCGACTCGAAGCAGGCCTGATTCTAAGAGCAAGACTTCTAAAAGACAATCGAT TGTAAATTTCGGGGATTTCA
Downstream 100 bases:
>100_bases CGGCGTCGCAAAACCTGAGGGCGGTATGGGGAAGATGAACGACAGCGCCGGCGGCCAAGCCGGCCAGCCACGCGCCCGGG GGCGCCGCGCCGGATGCGCG
Product: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins
Products: NA
Alternate protein names: D-Alanyl-D-Alanine Carboxypeptidase Family; Transmembrane Protein; LysM Domain-Containing Protein; Subfamily; D-Alanyl-D-Alanine Carboxypeptidase Family Protein
Number of amino acids: Translated: 283; Mature: 283
Protein sequence:
>283_residues MIAVVLIAYFAIAVLAAALFLLPGVRASLFGSVAQFHGRLSRRVSDRAQRTRGHILKSAKISRNSLSDLQNLLIRRRLLI MGAAGILATPPLIAIALRGRQLFQYDDTIRVPDEKIAALLQGEQLVPPLPLPPEVFATREVEQIRPALKDASRDWNLLDP DFRTRLLLVYKIMHEQYGYEMALLEGYRSPERQNRLAQMGTNVTNAAAYQSYHQFGLAADNAFLRDGKLVISEKDPWAMR GYQLYGQVAEQVGLTWGGRWKMMDLGHVEFHKPGFKLGHPPPQ
Sequences:
>Translated_283_residues MIAVVLIAYFAIAVLAAALFLLPGVRASLFGSVAQFHGRLSRRVSDRAQRTRGHILKSAKISRNSLSDLQNLLIRRRLLI MGAAGILATPPLIAIALRGRQLFQYDDTIRVPDEKIAALLQGEQLVPPLPLPPEVFATREVEQIRPALKDASRDWNLLDP DFRTRLLLVYKIMHEQYGYEMALLEGYRSPERQNRLAQMGTNVTNAAAYQSYHQFGLAADNAFLRDGKLVISEKDPWAMR GYQLYGQVAEQVGLTWGGRWKMMDLGHVEFHKPGFKLGHPPPQ >Mature_283_residues MIAVVLIAYFAIAVLAAALFLLPGVRASLFGSVAQFHGRLSRRVSDRAQRTRGHILKSAKISRNSLSDLQNLLIRRRLLI MGAAGILATPPLIAIALRGRQLFQYDDTIRVPDEKIAALLQGEQLVPPLPLPPEVFATREVEQIRPALKDASRDWNLLDP DFRTRLLLVYKIMHEQYGYEMALLEGYRSPERQNRLAQMGTNVTNAAAYQSYHQFGLAADNAFLRDGKLVISEKDPWAMR GYQLYGQVAEQVGLTWGGRWKMMDLGHVEFHKPGFKLGHPPPQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31836; Mature: 31836
Theoretical pI: Translated: 10.33; Mature: 10.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIAVVLIAYFAIAVLAAALFLLPGVRASLFGSVAQFHGRLSRRVSDRAQRTRGHILKSAK CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ISRNSLSDLQNLLIRRRLLIMGAAGILATPPLIAIALRGRQLFQYDDTIRVPDEKIAALL HHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHCCCCCEECCCCEECCHHHHHHHH QGEQLVPPLPLPPEVFATREVEQIRPALKDASRDWNLLDPDFRTRLLLVYKIMHEQYGYE CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCH MALLEGYRSPERQNRLAQMGTNVTNAAAYQSYHQFGLAADNAFLRDGKLVISEKDPWAMR HHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEECCEEEEECCCCCHHH GYQLYGQVAEQVGLTWGGRWKMMDLGHVEFHKPGFKLGHPPPQ HHHHHHHHHHHHCCCCCCCEEEEECCCCEECCCCCCCCCCCCC >Mature Secondary Structure MIAVVLIAYFAIAVLAAALFLLPGVRASLFGSVAQFHGRLSRRVSDRAQRTRGHILKSAK CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ISRNSLSDLQNLLIRRRLLIMGAAGILATPPLIAIALRGRQLFQYDDTIRVPDEKIAALL HHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHCCCCCEECCCCEECCHHHHHHHH QGEQLVPPLPLPPEVFATREVEQIRPALKDASRDWNLLDPDFRTRLLLVYKIMHEQYGYE CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCH MALLEGYRSPERQNRLAQMGTNVTNAAAYQSYHQFGLAADNAFLRDGKLVISEKDPWAMR HHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEECCEEEEECCCCCHHH GYQLYGQVAEQVGLTWGGRWKMMDLGHVEFHKPGFKLGHPPPQ HHHHHHHHHHHHCCCCCCCEEEEECCCCEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA