Click here to switch to the map view.

The map label for this gene is clpV1 [H]

Identifier: 238026067

GI number: 238026067

Start: 407505

End: 410174

Strand: Direct

Name: clpV1 [H]

Synonym: bglu_1g03950

Alternate gene names: 238026067

Gene position: 407505-410174 (Clockwise)

Preceding gene: 238026066

Following gene: 238026068

Centisome position: 10.43

GC content: 70.97

Gene sequence:

>2670_bases
ATGAGCACGCCCCTCAAAACCCTGATTGCCAAACTGAATCCCACCTGCCGCAAGGCGGCCGAACGCGCGGCCAGCCAGTG
CCTCGCGCGCGGCCACTACGAGGTCGATCTCGAGCACCTGTTCGTGGCGCTGCTCGACGAGACCTCGGGCGACATGCCGG
TGGTGCTGCGCGCGAGCGGCGTCGATCCGCACGCGCTGCGCCGCGACCTCGAGCGCGAGCTCGACACGCTCAAGAGCGGC
AACACGCGCACGCCGGTGTTCTCGGTGCATCTGAGCGAGCTGTTCCAGCAGGCCTGGCTGATTGCCTCGCTCGATGCGCA
GATCGGCCGGATCCGTTCCGGGCACCTGCTGCTCGCGCTGCTGAGCGCGCCGGACCTCGCGCAGTTCGCGCAGCGCATGT
CGCCGCAGTTCGCGCAGGTGCGCGTGACCGATCTGAAGCACAAGTTCGACGAGATCACGGCCGGCTCCCACGAGGCCGAG
CCGCGCGGCGCCGAGGCCGGGCACGACGGCGCGCCCGAGGCCGCCGCGCTGGCCGGTGCCGCGGGCGGCCCGTCGAAGAC
GCCCGCGCTCGACACCTACACCACCAACCTCACGCAGCGCGCGCGCGACGGCAAGATCGATCCGGTGATCGGCCGCGACG
CCGAGATCCGCCAGGCGATCGACATCCTGATGCGGCGCCGCCAGAACAACCCGATCATGACCGGCGAGGCCGGCGTCGGG
AAGACCGCCGTGGTGGAAGGGCTGGCGCTGCGGATCGCCGCGGCCGACGTGCCGCCGCCGCTCGCGGGCGTGGCGCTGCA
CGTGCTCGACATGGGGCTGCTGCAGGCCGGCGCGAGCGTGAAGGGCGAGTTCGAGAACCGCCTGAAGAGCGTGATCGACG
AGGTCAAGCAGAGCCCGCATCCGATCATCCTGTTCATCGACGAGGCGCACACCATCATCGGCGCCGGCGGCCAGGCCGGC
CAGAACGACGCGGCCAACCTGCTCAAGCCGGCGCTCGCGCGCGGCGAGCTGCGCACCATCGCGGCCACCACCTGGAGCGA
GTACAAGAAATACTTCGAGAAGGATGCGGCGCTCGCGCGGCGCTTCCAGGTGGTCAAGATCGAGGAGCCGAGCGAGCCGC
TGGCCGCCGCGATGCTGCGCGGCATGGCCGCGCTGATGGAGCGCCACTTCAACGTGCGGATTCTCGACGACGCGATCACC
GAGGCGGTGCGCCTGTCGCATCGCTACATCAGCGGCCGGCAGCTGCCGGACAAGGCGATCAGCGTGCTCGATACGGCCTG
CGCGAAGGTCGCGCTGGCGCAGAGCGCGACGCCGGCGGCCATCGACGACCTGAAGAAGCGCCTGGAGCGCACCGCCGCCG
AGATCGCCGCGCTCGAGCGCGAGGTGGCGGGCGGGGCCGCGCACGACGAGCGCCTCGCCGCGCTCGGCGCGGCGCGCGAC
GCCGATCTGGCCGCGCTGGCGGCGGCCGAGGCGCGCTATGCCGAGGAGCAGGCGATCGTCGCCGAGATCGTCGCGCTGCG
CGCGCAGATCGATGCCTCGCGCGAGGCATCGGCCGACGGCGAGCGGATCGACGCCGACGCGGTGCGCGCCCAGCTGGCCG
AGCGCGTGGCCGCGCTGAAGGCGGTGCAGGGCGGCGAGCCGATGGTGCCGCTGCAGGTGGACGCGCACGTGGTGGCCGAG
ATCGTCGCCGCGTGGACCGGCATCCCGCTCGGCCGCATGGTCAAGGACGAGATCGAGACCGTGATGAACCTGAAGGCGCT
GCTCGGCGCGCGCGTGATCGGTCAGGACCACGCGCTCGACGCGGTGGCGCAGCGCGTGCGCACCGCGACCGCCGGCCTCG
AGGATCCGAACAAGCCGCGCGGCGTGTTCCTGTTCGTCGGGCCGTCGGGCGTCGGCAAGACCGAGACCGCGCTCGCGCTG
GCCGACGTGCTGTACGGCGGCGAGCGCAAGATGGTCACCATCAACATGAGCGAGTACCAGGAGGCGCACAGCGTGTCGGG
CCTGAAGGGCTCGCCGCCGGGCTACGTCGGCTACGGCGAGGGCGGCGTGCTGACCGAGGCGGTGCGGCGCAACCCGTATT
CGGTGGTGCTGCTCGACGAGATCGAGAAGGCGCACCCGGACGTGCTCGAGATGTTCTTCCAGGTGTTCGACAAGGGCGTG
ATGGACGATGCCGAGGGCCGCGAGATCGACTTCCGCAACACGCTGATCATCCTGACCTCGAACGTCGGCTCGTCGGCGGT
GATGCAGGCCTGCCTGAACCAGCCCGCCGAGGCGCTGCCCGATCCCGACGCGCTGGCCGAGACGCTGCGCCCGGCGCTCT
ACAAGGCGTTCAAGCCGGCCTTCCTCGGCCGCATGAAGGTGGTGCCGTATTATCCGATCTCGGACGACGTGCTGGCCGAG
ATCATCGAGCTGAAGCTCGAGCGGATCGCGCGGCGCATCGAGGCGAACCACAAGGCCCGCTTCGAGTGGGACGAGTCGCT
GGTGGACGCCGTGCTGGCGCGCTGCACCGAGGTGGATTCGGGCGCGCGCAACGTCGATCACATCCTGAACGGCACGCTGC
TGCCCGAGATCGCCGGCCATGTGCTCGAACGGCTCGCCGAGGGCAGCGCGATCGAGCGCATCGCCGTGCGCGCGAGCGAG
GCGGGCGAGTTCGAGTACACCGTCAAGTAA

Upstream 100 bases:

>100_bases
CCGACGCGCGCTACGAACTGCACGTGATCCACTGAGCGCCGCGCCCGAACAGGCCAAGCCCCGAATCCAACGACCGAGCG
AACCGAGAGCCATCGACGTC

Downstream 100 bases:

>100_bases
CGCCGTATCCCCGCGGCGCGCGGCGGGCGGGCACAAGCGAGCCCGCCCCGCGCACGCCGCTTCACCGACCATCCCGCTGT
CACGACGACCATGCCGATTC

Product: putative type VI secretion system protein TssH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 889; Mature: 888

Protein sequence:

>889_residues
MSTPLKTLIAKLNPTCRKAAERAASQCLARGHYEVDLEHLFVALLDETSGDMPVVLRASGVDPHALRRDLERELDTLKSG
NTRTPVFSVHLSELFQQAWLIASLDAQIGRIRSGHLLLALLSAPDLAQFAQRMSPQFAQVRVTDLKHKFDEITAGSHEAE
PRGAEAGHDGAPEAAALAGAAGGPSKTPALDTYTTNLTQRARDGKIDPVIGRDAEIRQAIDILMRRRQNNPIMTGEAGVG
KTAVVEGLALRIAAADVPPPLAGVALHVLDMGLLQAGASVKGEFENRLKSVIDEVKQSPHPIILFIDEAHTIIGAGGQAG
QNDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQVVKIEEPSEPLAAAMLRGMAALMERHFNVRILDDAIT
EAVRLSHRYISGRQLPDKAISVLDTACAKVALAQSATPAAIDDLKKRLERTAAEIAALEREVAGGAAHDERLAALGAARD
ADLAALAAAEARYAEEQAIVAEIVALRAQIDASREASADGERIDADAVRAQLAERVAALKAVQGGEPMVPLQVDAHVVAE
IVAAWTGIPLGRMVKDEIETVMNLKALLGARVIGQDHALDAVAQRVRTATAGLEDPNKPRGVFLFVGPSGVGKTETALAL
ADVLYGGERKMVTINMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEIEKAHPDVLEMFFQVFDKGV
MDDAEGREIDFRNTLIILTSNVGSSAVMQACLNQPAEALPDPDALAETLRPALYKAFKPAFLGRMKVVPYYPISDDVLAE
IIELKLERIARRIEANHKARFEWDESLVDAVLARCTEVDSGARNVDHILNGTLLPEIAGHVLERLAEGSAIERIAVRASE
AGEFEYTVK

Sequences:

>Translated_889_residues
MSTPLKTLIAKLNPTCRKAAERAASQCLARGHYEVDLEHLFVALLDETSGDMPVVLRASGVDPHALRRDLERELDTLKSG
NTRTPVFSVHLSELFQQAWLIASLDAQIGRIRSGHLLLALLSAPDLAQFAQRMSPQFAQVRVTDLKHKFDEITAGSHEAE
PRGAEAGHDGAPEAAALAGAAGGPSKTPALDTYTTNLTQRARDGKIDPVIGRDAEIRQAIDILMRRRQNNPIMTGEAGVG
KTAVVEGLALRIAAADVPPPLAGVALHVLDMGLLQAGASVKGEFENRLKSVIDEVKQSPHPIILFIDEAHTIIGAGGQAG
QNDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQVVKIEEPSEPLAAAMLRGMAALMERHFNVRILDDAIT
EAVRLSHRYISGRQLPDKAISVLDTACAKVALAQSATPAAIDDLKKRLERTAAEIAALEREVAGGAAHDERLAALGAARD
ADLAALAAAEARYAEEQAIVAEIVALRAQIDASREASADGERIDADAVRAQLAERVAALKAVQGGEPMVPLQVDAHVVAE
IVAAWTGIPLGRMVKDEIETVMNLKALLGARVIGQDHALDAVAQRVRTATAGLEDPNKPRGVFLFVGPSGVGKTETALAL
ADVLYGGERKMVTINMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEIEKAHPDVLEMFFQVFDKGV
MDDAEGREIDFRNTLIILTSNVGSSAVMQACLNQPAEALPDPDALAETLRPALYKAFKPAFLGRMKVVPYYPISDDVLAE
IIELKLERIARRIEANHKARFEWDESLVDAVLARCTEVDSGARNVDHILNGTLLPEIAGHVLERLAEGSAIERIAVRASE
AGEFEYTVK
>Mature_888_residues
STPLKTLIAKLNPTCRKAAERAASQCLARGHYEVDLEHLFVALLDETSGDMPVVLRASGVDPHALRRDLERELDTLKSGN
TRTPVFSVHLSELFQQAWLIASLDAQIGRIRSGHLLLALLSAPDLAQFAQRMSPQFAQVRVTDLKHKFDEITAGSHEAEP
RGAEAGHDGAPEAAALAGAAGGPSKTPALDTYTTNLTQRARDGKIDPVIGRDAEIRQAIDILMRRRQNNPIMTGEAGVGK
TAVVEGLALRIAAADVPPPLAGVALHVLDMGLLQAGASVKGEFENRLKSVIDEVKQSPHPIILFIDEAHTIIGAGGQAGQ
NDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQVVKIEEPSEPLAAAMLRGMAALMERHFNVRILDDAITE
AVRLSHRYISGRQLPDKAISVLDTACAKVALAQSATPAAIDDLKKRLERTAAEIAALEREVAGGAAHDERLAALGAARDA
DLAALAAAEARYAEEQAIVAEIVALRAQIDASREASADGERIDADAVRAQLAERVAALKAVQGGEPMVPLQVDAHVVAEI
VAAWTGIPLGRMVKDEIETVMNLKALLGARVIGQDHALDAVAQRVRTATAGLEDPNKPRGVFLFVGPSGVGKTETALALA
DVLYGGERKMVTINMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEIEKAHPDVLEMFFQVFDKGVM
DDAEGREIDFRNTLIILTSNVGSSAVMQACLNQPAEALPDPDALAETLRPALYKAFKPAFLGRMKVVPYYPISDDVLAEI
IELKLERIARRIEANHKARFEWDESLVDAVLARCTEVDSGARNVDHILNGTLLPEIAGHVLERLAEGSAIERIAVRASEA
GEFEYTVK

Specific function: Required for secretion of hcp1 probably by providing the energy source for its translocation [H]

COG id: COG0542

COG function: function code O; ATPases with chaperone activity, ATP-binding subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the clpA/clpB family [H]

Homologues:

Organism=Homo sapiens, GI13540606, Length=321, Percent_Identity=34.8909657320872, Blast_Score=179, Evalue=8e-45,
Organism=Escherichia coli, GI1788943, Length=811, Percent_Identity=39.5807644882861, Blast_Score=531, Evalue=1e-152,
Organism=Escherichia coli, GI1787109, Length=413, Percent_Identity=38.9830508474576, Blast_Score=246, Evalue=4e-66,
Organism=Saccharomyces cerevisiae, GI6320464, Length=708, Percent_Identity=37.8531073446328, Blast_Score=453, Evalue=1e-128,
Organism=Saccharomyces cerevisiae, GI6323002, Length=773, Percent_Identity=35.4463130659767, Blast_Score=452, Evalue=1e-128,

Paralogues:

None

Copy number: 560 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR003959
- InterPro:   IPR017729
- InterPro:   IPR018368
- InterPro:   IPR001270
- InterPro:   IPR019489
- InterPro:   IPR023150 [H]

Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF10431 ClpB_D2-small [H]

EC number: NA

Molecular weight: Translated: 95581; Mature: 95450

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: PS00870 CLPAB_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPLKTLIAKLNPTCRKAAERAASQCLARGHYEVDLEHLFVALLDETSGDMPVVLRASG
CCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCEEEEECC
VDPHALRRDLERELDTLKSGNTRTPVFSVHLSELFQQAWLIASLDAQIGRIRSGHLLLAL
CCHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
LSAPDLAQFAQRMSPQFAQVRVTDLKHKFDEITAGSHEAEPRGAEAGHDGAPEAAALAGA
CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCC
AGGPSKTPALDTYTTNLTQRARDGKIDPVIGRDAEIRQAIDILMRRRQNNPIMTGEAGVG
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCC
KTAVVEGLALRIAAADVPPPLAGVALHVLDMGLLQAGASVKGEFENRLKSVIDEVKQSPH
HHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC
PIILFIDEAHTIIGAGGQAGQNDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALAR
CEEEEEECCCEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
RFQVVKIEEPSEPLAAAMLRGMAALMERHFNVRILDDAITEAVRLSHRYISGRQLPDKAI
HEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHCCCCCCHHHH
SVLDTACAKVALAQSATPAAIDDLKKRLERTAAEIAALEREVAGGAAHDERLAALGAARD
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
ADLAALAAAEARYAEEQAIVAEIVALRAQIDASREASADGERIDADAVRAQLAERVAALK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
AVQGGEPMVPLQVDAHVVAEIVAAWTGIPLGRMVKDEIETVMNLKALLGARVIGQDHALD
HHCCCCCCEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
AVAQRVRTATAGLEDPNKPRGVFLFVGPSGVGKTETALALADVLYGGERKMVTINMSEYQ
HHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHH
EAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEIEKAHPDVLEMFFQVFDKGV
HHHHCCCCCCCCCCEEECCCCCHHHHHHHCCCCEEEEEHHHHHCCHHHHHHHHHHHCCCC
MDDAEGREIDFRNTLIILTSNVGSSAVMQACLNQPAEALPDPDALAETLRPALYKAFKPA
CCCCCCCEEECCCEEEEEECCCCHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHH
FLGRMKVVPYYPISDDVLAEIIELKLERIARRIEANHKARFEWDESLVDAVLARCTEVDS
HHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC
GARNVDHILNGTLLPEIAGHVLERLAEGSAIERIAVRASEAGEFEYTVK
CCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEEC
>Mature Secondary Structure 
STPLKTLIAKLNPTCRKAAERAASQCLARGHYEVDLEHLFVALLDETSGDMPVVLRASG
CCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCEEEEECC
VDPHALRRDLERELDTLKSGNTRTPVFSVHLSELFQQAWLIASLDAQIGRIRSGHLLLAL
CCHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
LSAPDLAQFAQRMSPQFAQVRVTDLKHKFDEITAGSHEAEPRGAEAGHDGAPEAAALAGA
CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCC
AGGPSKTPALDTYTTNLTQRARDGKIDPVIGRDAEIRQAIDILMRRRQNNPIMTGEAGVG
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCC
KTAVVEGLALRIAAADVPPPLAGVALHVLDMGLLQAGASVKGEFENRLKSVIDEVKQSPH
HHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC
PIILFIDEAHTIIGAGGQAGQNDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALAR
CEEEEEECCCEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
RFQVVKIEEPSEPLAAAMLRGMAALMERHFNVRILDDAITEAVRLSHRYISGRQLPDKAI
HEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHCCCCCCHHHH
SVLDTACAKVALAQSATPAAIDDLKKRLERTAAEIAALEREVAGGAAHDERLAALGAARD
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
ADLAALAAAEARYAEEQAIVAEIVALRAQIDASREASADGERIDADAVRAQLAERVAALK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
AVQGGEPMVPLQVDAHVVAEIVAAWTGIPLGRMVKDEIETVMNLKALLGARVIGQDHALD
HHCCCCCCEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
AVAQRVRTATAGLEDPNKPRGVFLFVGPSGVGKTETALALADVLYGGERKMVTINMSEYQ
HHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHH
EAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEIEKAHPDVLEMFFQVFDKGV
HHHHCCCCCCCCCCEEECCCCCHHHHHHHCCCCEEEEEHHHHHCCHHHHHHHHHHHCCCC
MDDAEGREIDFRNTLIILTSNVGSSAVMQACLNQPAEALPDPDALAETLRPALYKAFKPA
CCCCCCCEEECCCEEEEEECCCCHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHH
FLGRMKVVPYYPISDDVLAEIIELKLERIARRIEANHKARFEWDESLVDAVLARCTEVDS
HHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC
GARNVDHILNGTLLPEIAGHVLERLAEGSAIERIAVRASEAGEFEYTVK
CCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]