| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238026066
Identifier: 238026066
GI number: 238026066
Start: 406342
End: 407439
Strand: Direct
Name: 238026066
Synonym: bglu_1g03940
Alternate gene names: NA
Gene position: 406342-407439 (Clockwise)
Preceding gene: 238026065
Following gene: 238026067
Centisome position: 10.4
GC content: 70.86
Gene sequence:
>1098_bases ATGCCAACCGCGAAGCGGCGAATCGATCCTGGCGTAGTCGGGCAATTCCTCGACGAGCCGTATCGCTTCGAGTTCTTCCA GGCGGTGCGCTTGCTCGAAACCTGGTTCGCGCGGCGTGATCCGGAGAAGCCCGACGCGCTGCGGCCCGGCGAGATCGTCG AGCGGCGCCTGGCGTTCCGCAATTCGCTGTCGCTCGGCTTCCCGCCGAGCGAGATCGAGGAGGCGCAGTCGTTCGACGCG GCCGGCGAGCACGTGGCCGAGGAGGCGCGCGCGGCCGCGATCGGCAGCGAGGCGATCGACCGCGTGTCGATCATGCCGGC GTTCTTCGGCCTGCTGGGCGGCCAGGGCGCGCTGCCGCATCACTACACCGAGCAGGTGGTGGCGCGCGAGCACCTGAAGC GCGACCACGCGGCGCGCGCGTTCTTCGACGTGTTCTCGAACCGCGCCACCGCGCTGTTCTATTCGGCGTGGAAGAAGTAC CGGCTGCCGCTGCATTACGAACTCGACCGCGACGAGCGCTACCTGCCGCTGCTGCTCGCGCTGGCCGGCGTGTCGCACCG CGGCGCGCGGCGAGCGATGCAGGAAGGCACCGGCGCGGTGATCGACGAGGCGATCGCCGGCTACGCGCTGGCCGCGCGGC ACCGGCCCGTGTCGGCCGCCTATCTGCAGCGCACGCTGTCGGACTACTTCCAGGTGACGATCGGCGTCGAGCAGTTCGTC GGCAAGTGGTACGACGTGCCGCCCGACCAGCTGAGCGTGCTCGGCGAGATCAACGCCACGCTCGGCGCCACCGCGCTGGT GGGCGAGCGCGTCTGGCAGCGCGACATGCGCGCGAGGCTGGTGGTTGGCCCGCTCTCCAAGCGCGACTACGAGGCGTTCC TGCCCGGCGGCGACTGCGCGGTCGCGCTGGAGCGGATGCTGACGCTGGTGGCCGGCGTCACGCTCGAATACGAGGTCCGG CTGGTGCTCAAGCGCGCCGAGGTCGGCCCGACCATCCTCAACAACGGCGGGCGGCTCGGCTGGGACGCGTTCCTCTGCAC GCAGGAGGCGCGGCACGACCGCGCCGACGCGCGCTACGAACTGCACGTGATCCACTGA
Upstream 100 bases:
>100_bases TCGCGCGCATGCTCGACGTGTTCTTCGGGCTGTACGTCCACCTCAACAGCTTTGTGCAACTGATCGTCGTGTCCAAGCGC ACCGGCGAGGAGATCATGCG
Downstream 100 bases:
>100_bases GCGCCGCGCCCGAACAGGCCAAGCCCCGAATCCAACGACCGAGCGAACCGAGAGCCATCGACGTCATGAGCACGCCCCTC AAAACCCTGATTGCCAAACT
Product: putative type VI secretion system protein TssG
Products: NA
Alternate protein names: Type VI Secretion Protein Family; Cytoplasmic Protein; Replication/Virulence Associated Protein; Type VI Secretion System Protein ImpH; Type VI Secretion System Protein; Type VI Secretion Protein VasG; T6ss R; Type VI Secretion System Core Protein; Type VI Secretion System Protein EvpG; Conserved Protein; Protein ImpH; Secreted Protein; Cytoplasmic Protein SciB
Number of amino acids: Translated: 365; Mature: 364
Protein sequence:
>365_residues MPTAKRRIDPGVVGQFLDEPYRFEFFQAVRLLETWFARRDPEKPDALRPGEIVERRLAFRNSLSLGFPPSEIEEAQSFDA AGEHVAEEARAAAIGSEAIDRVSIMPAFFGLLGGQGALPHHYTEQVVAREHLKRDHAARAFFDVFSNRATALFYSAWKKY RLPLHYELDRDERYLPLLLALAGVSHRGARRAMQEGTGAVIDEAIAGYALAARHRPVSAAYLQRTLSDYFQVTIGVEQFV GKWYDVPPDQLSVLGEINATLGATALVGERVWQRDMRARLVVGPLSKRDYEAFLPGGDCAVALERMLTLVAGVTLEYEVR LVLKRAEVGPTILNNGGRLGWDAFLCTQEARHDRADARYELHVIH
Sequences:
>Translated_365_residues MPTAKRRIDPGVVGQFLDEPYRFEFFQAVRLLETWFARRDPEKPDALRPGEIVERRLAFRNSLSLGFPPSEIEEAQSFDA AGEHVAEEARAAAIGSEAIDRVSIMPAFFGLLGGQGALPHHYTEQVVAREHLKRDHAARAFFDVFSNRATALFYSAWKKY RLPLHYELDRDERYLPLLLALAGVSHRGARRAMQEGTGAVIDEAIAGYALAARHRPVSAAYLQRTLSDYFQVTIGVEQFV GKWYDVPPDQLSVLGEINATLGATALVGERVWQRDMRARLVVGPLSKRDYEAFLPGGDCAVALERMLTLVAGVTLEYEVR LVLKRAEVGPTILNNGGRLGWDAFLCTQEARHDRADARYELHVIH >Mature_364_residues PTAKRRIDPGVVGQFLDEPYRFEFFQAVRLLETWFARRDPEKPDALRPGEIVERRLAFRNSLSLGFPPSEIEEAQSFDAA GEHVAEEARAAAIGSEAIDRVSIMPAFFGLLGGQGALPHHYTEQVVAREHLKRDHAARAFFDVFSNRATALFYSAWKKYR LPLHYELDRDERYLPLLLALAGVSHRGARRAMQEGTGAVIDEAIAGYALAARHRPVSAAYLQRTLSDYFQVTIGVEQFVG KWYDVPPDQLSVLGEINATLGATALVGERVWQRDMRARLVVGPLSKRDYEAFLPGGDCAVALERMLTLVAGVTLEYEVRL VLKRAEVGPTILNNGGRLGWDAFLCTQEARHDRADARYELHVIH
Specific function: Unknown
COG id: COG3520
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40913; Mature: 40782
Theoretical pI: Translated: 6.75; Mature: 6.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTAKRRIDPGVVGQFLDEPYRFEFFQAVRLLETWFARRDPEKPDALRPGEIVERRLAFR CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH NSLSLGFPPSEIEEAQSFDAAGEHVAEEARAAAIGSEAIDRVSIMPAFFGLLGGQGALPH HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH HYTEQVVAREHLKRDHAARAFFDVFSNRATALFYSAWKKYRLPLHYELDRDERYLPLLLA HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH LAGVSHRGARRAMQEGTGAVIDEAIAGYALAARHRPVSAAYLQRTLSDYFQVTIGVEQFV HHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH GKWYDVPPDQLSVLGEINATLGATALVGERVWQRDMRARLVVGPLSKRDYEAFLPGGDCA HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHCCCCCHHH VALERMLTLVAGVTLEYEVRLVLKRAEVGPTILNNGGRLGWDAFLCTQEARHDRADARYE HHHHHHHHHHHCCCCEEHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCEEE LHVIH EEEEC >Mature Secondary Structure PTAKRRIDPGVVGQFLDEPYRFEFFQAVRLLETWFARRDPEKPDALRPGEIVERRLAFR CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH NSLSLGFPPSEIEEAQSFDAAGEHVAEEARAAAIGSEAIDRVSIMPAFFGLLGGQGALPH HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH HYTEQVVAREHLKRDHAARAFFDVFSNRATALFYSAWKKYRLPLHYELDRDERYLPLLLA HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH LAGVSHRGARRAMQEGTGAVIDEAIAGYALAARHRPVSAAYLQRTLSDYFQVTIGVEQFV HHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH GKWYDVPPDQLSVLGEINATLGATALVGERVWQRDMRARLVVGPLSKRDYEAFLPGGDCA HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHCCCCCHHH VALERMLTLVAGVTLEYEVRLVLKRAEVGPTILNNGGRLGWDAFLCTQEARHDRADARYE HHHHHHHHHHHCCCCEEHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCEEE LHVIH EEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA