Definition Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence.
Accession NC_012724
Length 3,906,507

Click here to switch to the map view.

The map label for this gene is 238026066

Identifier: 238026066

GI number: 238026066

Start: 406342

End: 407439

Strand: Direct

Name: 238026066

Synonym: bglu_1g03940

Alternate gene names: NA

Gene position: 406342-407439 (Clockwise)

Preceding gene: 238026065

Following gene: 238026067

Centisome position: 10.4

GC content: 70.86

Gene sequence:

>1098_bases
ATGCCAACCGCGAAGCGGCGAATCGATCCTGGCGTAGTCGGGCAATTCCTCGACGAGCCGTATCGCTTCGAGTTCTTCCA
GGCGGTGCGCTTGCTCGAAACCTGGTTCGCGCGGCGTGATCCGGAGAAGCCCGACGCGCTGCGGCCCGGCGAGATCGTCG
AGCGGCGCCTGGCGTTCCGCAATTCGCTGTCGCTCGGCTTCCCGCCGAGCGAGATCGAGGAGGCGCAGTCGTTCGACGCG
GCCGGCGAGCACGTGGCCGAGGAGGCGCGCGCGGCCGCGATCGGCAGCGAGGCGATCGACCGCGTGTCGATCATGCCGGC
GTTCTTCGGCCTGCTGGGCGGCCAGGGCGCGCTGCCGCATCACTACACCGAGCAGGTGGTGGCGCGCGAGCACCTGAAGC
GCGACCACGCGGCGCGCGCGTTCTTCGACGTGTTCTCGAACCGCGCCACCGCGCTGTTCTATTCGGCGTGGAAGAAGTAC
CGGCTGCCGCTGCATTACGAACTCGACCGCGACGAGCGCTACCTGCCGCTGCTGCTCGCGCTGGCCGGCGTGTCGCACCG
CGGCGCGCGGCGAGCGATGCAGGAAGGCACCGGCGCGGTGATCGACGAGGCGATCGCCGGCTACGCGCTGGCCGCGCGGC
ACCGGCCCGTGTCGGCCGCCTATCTGCAGCGCACGCTGTCGGACTACTTCCAGGTGACGATCGGCGTCGAGCAGTTCGTC
GGCAAGTGGTACGACGTGCCGCCCGACCAGCTGAGCGTGCTCGGCGAGATCAACGCCACGCTCGGCGCCACCGCGCTGGT
GGGCGAGCGCGTCTGGCAGCGCGACATGCGCGCGAGGCTGGTGGTTGGCCCGCTCTCCAAGCGCGACTACGAGGCGTTCC
TGCCCGGCGGCGACTGCGCGGTCGCGCTGGAGCGGATGCTGACGCTGGTGGCCGGCGTCACGCTCGAATACGAGGTCCGG
CTGGTGCTCAAGCGCGCCGAGGTCGGCCCGACCATCCTCAACAACGGCGGGCGGCTCGGCTGGGACGCGTTCCTCTGCAC
GCAGGAGGCGCGGCACGACCGCGCCGACGCGCGCTACGAACTGCACGTGATCCACTGA

Upstream 100 bases:

>100_bases
TCGCGCGCATGCTCGACGTGTTCTTCGGGCTGTACGTCCACCTCAACAGCTTTGTGCAACTGATCGTCGTGTCCAAGCGC
ACCGGCGAGGAGATCATGCG

Downstream 100 bases:

>100_bases
GCGCCGCGCCCGAACAGGCCAAGCCCCGAATCCAACGACCGAGCGAACCGAGAGCCATCGACGTCATGAGCACGCCCCTC
AAAACCCTGATTGCCAAACT

Product: putative type VI secretion system protein TssG

Products: NA

Alternate protein names: Type VI Secretion Protein Family; Cytoplasmic Protein; Replication/Virulence Associated Protein; Type VI Secretion System Protein ImpH; Type VI Secretion System Protein; Type VI Secretion Protein VasG; T6ss R; Type VI Secretion System Core Protein; Type VI Secretion System Protein EvpG; Conserved Protein; Protein ImpH; Secreted Protein; Cytoplasmic Protein SciB

Number of amino acids: Translated: 365; Mature: 364

Protein sequence:

>365_residues
MPTAKRRIDPGVVGQFLDEPYRFEFFQAVRLLETWFARRDPEKPDALRPGEIVERRLAFRNSLSLGFPPSEIEEAQSFDA
AGEHVAEEARAAAIGSEAIDRVSIMPAFFGLLGGQGALPHHYTEQVVAREHLKRDHAARAFFDVFSNRATALFYSAWKKY
RLPLHYELDRDERYLPLLLALAGVSHRGARRAMQEGTGAVIDEAIAGYALAARHRPVSAAYLQRTLSDYFQVTIGVEQFV
GKWYDVPPDQLSVLGEINATLGATALVGERVWQRDMRARLVVGPLSKRDYEAFLPGGDCAVALERMLTLVAGVTLEYEVR
LVLKRAEVGPTILNNGGRLGWDAFLCTQEARHDRADARYELHVIH

Sequences:

>Translated_365_residues
MPTAKRRIDPGVVGQFLDEPYRFEFFQAVRLLETWFARRDPEKPDALRPGEIVERRLAFRNSLSLGFPPSEIEEAQSFDA
AGEHVAEEARAAAIGSEAIDRVSIMPAFFGLLGGQGALPHHYTEQVVAREHLKRDHAARAFFDVFSNRATALFYSAWKKY
RLPLHYELDRDERYLPLLLALAGVSHRGARRAMQEGTGAVIDEAIAGYALAARHRPVSAAYLQRTLSDYFQVTIGVEQFV
GKWYDVPPDQLSVLGEINATLGATALVGERVWQRDMRARLVVGPLSKRDYEAFLPGGDCAVALERMLTLVAGVTLEYEVR
LVLKRAEVGPTILNNGGRLGWDAFLCTQEARHDRADARYELHVIH
>Mature_364_residues
PTAKRRIDPGVVGQFLDEPYRFEFFQAVRLLETWFARRDPEKPDALRPGEIVERRLAFRNSLSLGFPPSEIEEAQSFDAA
GEHVAEEARAAAIGSEAIDRVSIMPAFFGLLGGQGALPHHYTEQVVAREHLKRDHAARAFFDVFSNRATALFYSAWKKYR
LPLHYELDRDERYLPLLLALAGVSHRGARRAMQEGTGAVIDEAIAGYALAARHRPVSAAYLQRTLSDYFQVTIGVEQFVG
KWYDVPPDQLSVLGEINATLGATALVGERVWQRDMRARLVVGPLSKRDYEAFLPGGDCAVALERMLTLVAGVTLEYEVRL
VLKRAEVGPTILNNGGRLGWDAFLCTQEARHDRADARYELHVIH

Specific function: Unknown

COG id: COG3520

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40913; Mature: 40782

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTAKRRIDPGVVGQFLDEPYRFEFFQAVRLLETWFARRDPEKPDALRPGEIVERRLAFR
CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
NSLSLGFPPSEIEEAQSFDAAGEHVAEEARAAAIGSEAIDRVSIMPAFFGLLGGQGALPH
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
HYTEQVVAREHLKRDHAARAFFDVFSNRATALFYSAWKKYRLPLHYELDRDERYLPLLLA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
LAGVSHRGARRAMQEGTGAVIDEAIAGYALAARHRPVSAAYLQRTLSDYFQVTIGVEQFV
HHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GKWYDVPPDQLSVLGEINATLGATALVGERVWQRDMRARLVVGPLSKRDYEAFLPGGDCA
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHCCCCCHHH
VALERMLTLVAGVTLEYEVRLVLKRAEVGPTILNNGGRLGWDAFLCTQEARHDRADARYE
HHHHHHHHHHHCCCCEEHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCEEE
LHVIH
EEEEC
>Mature Secondary Structure 
PTAKRRIDPGVVGQFLDEPYRFEFFQAVRLLETWFARRDPEKPDALRPGEIVERRLAFR
CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
NSLSLGFPPSEIEEAQSFDAAGEHVAEEARAAAIGSEAIDRVSIMPAFFGLLGGQGALPH
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
HYTEQVVAREHLKRDHAARAFFDVFSNRATALFYSAWKKYRLPLHYELDRDERYLPLLLA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
LAGVSHRGARRAMQEGTGAVIDEAIAGYALAARHRPVSAAYLQRTLSDYFQVTIGVEQFV
HHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GKWYDVPPDQLSVLGEINATLGATALVGERVWQRDMRARLVVGPLSKRDYEAFLPGGDCA
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHCCCCCHHH
VALERMLTLVAGVTLEYEVRLVLKRAEVGPTILNNGGRLGWDAFLCTQEARHDRADARYE
HHHHHHHHHHHCCCCEEHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCEEE
LHVIH
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA