| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238026043
Identifier: 238026043
GI number: 238026043
Start: 380315
End: 383110
Strand: Reverse
Name: 238026043
Synonym: bglu_1g03700
Alternate gene names: NA
Gene position: 383110-380315 (Counterclockwise)
Preceding gene: 238026044
Following gene: 238026042
Centisome position: 9.81
GC content: 68.24
Gene sequence:
>2796_bases ATGGCCTCGATCGACGAACTGAAACAACGCATCGACCTGCACGACCTCGCCGATCGCCTCGGCTTGAAGCGCGGTCGTGG CGGCGACCGCGCGCTCTATCACTCGCCGCAGCACGACGACAAGAGCCCGTCCCTTTCGATCTACGTGAACCACCCGAAGC ACGGCACCGGCTGGCGCGACCATAGCGCCGACGCCGGCGGCTCGTGTATCGACCTGGTCATTCACGCGCGCGGCGGCACG GTCGCCGACGCGGTGCGCTACCTGCACGACACGTACGGCATCCCGCTCGACCGCCAGGCGCCGGCCGAGCGCCGCGAGAA AACGACCGTCGAATACATCGCCGATCGGTGCTTCGCCGAGCGCGACCAGGCGCGCGATTACCTCGTCGGCCGTGGCATTT CCGCAGCCGCGATCGACGCGGCGATCGCCGCGCGCTCGCTCGGCTTCAATACGTGGACCAGCTCGAAGGTCGCGGCCGGC GAAGTGGGTCACGCCGGCTCGGCCGCCGCGTTCATCGTGCGCGCGCCTGGCGACGGCCGCGTCGTTGCCGTCGACATGCG CTATGTCGATCCGGCGCTCAACGGCGGCGTCAAGACGCAAACCCAGGGCGACAAGGCCGGTTACGGCTGGACGGCCGATC CTCGCCGGCTCGACAAGGCGAAGCGCGTGTTCATCGTCGAAAGCGCGATCAACGCGCTGTCGATCGACACCTGCGCGATG CCTGGCGCCGCCGCGCTCGCGCTGCGCGGCCTGGCGAACGTCGACGGCATCGACTTCGCGTTCCTGCGCGGCAAACAGGT CGTGATCTGCCTGGACAACGACGAGCCGTTCGCGGACGGCCACCCGCGCGCCGGCCGCCGCCCTGGGCCGGAAGCTGCCT GGGCGCTCTACGAACGGCTCACGGCGCTGAACATCAGCGCCGTGCTCGTCGACCAGGCGAATTGGTTCGCCGACCTCGCG GACGGCGAGAAGGCCGTCAAGCCGATCAATGACGTGAACGACTACCTTCAACTGCGCGGCCCGGCCGATCTGCAGCGCGC ACTCGACCAGCTCGAGCCGTGGCTCATCGCCGGCCTCGCCGGCGACGCCACGCGTCGCGGCCGGCCGCGCATCTTCCTGC CGTCGCACGACTTCGCGCAGTACTGGCGTTTCCGCGTGCGGCCGGACTTCACCAGCTACATCACGAAGATGGACAAGAAC GAGGAAAGCGGCGTCGAGACGCCCGTCATGACGGACCTGTGCGGCTTCCGCATCGCCGGCATCAGCCGCGTGTCCGTGGC GAGCGCGACGTCGACGATGACGGGCGACGCCGACCAGGCGCCGACCGTCTATTTCGCCGTGTCAGTCCAGGCGCCGCGCC ACGGTGCGCAGCTCGTGCGCCGCGTCATGCTCGACGACCAGCTCCACAACGTCGACCAGTGGGGCAAGTTCGGCCCGATC TGGGCGCCGGCGCCGTTCAAGCGCATGGTCAACATCCTGGAGCGCGGCGCCGACCTCGGCGCACGCCAGGCGGCGAACTT CGTCGGCCTCGCCTGGCGCGATGGCCGCCTGATCGTCAACGAAGGCCCGGACTGCTACTTCACCGAAGCCGACAAGCAGT GCCCGTACCACAACCTGACCTTCCCGACCGGCCCGGCCAGCGATGCGCGTCGCGTGATCGCCGCATACCAGGCGACGTTC AAGCAGAACGCCGCGACGATTCCGCTCGTGTGGGCGCTCGGTGGCCACCTGAAGGCGCTGCTCGGTTTCTGGCCGCACAT CACGATCCAGGCGAACAAGGGCGCCGGTAAGTCGACGCTCATCAAGCGGCTCGAACGCTCGCTCGCCTTCACAATGTTCT CCGGGCAGTCGTTGCAGACCGAGTTCCGCCTGCTGACCAGCATCAGCCACACGAGCCACCCGGTCGGATGGGAAGAGCTG TCCGCCCGCCGGCAGGACGTGATCGACAAGGCGGTCGGGCTATTGCAGGAGAACTACCAGTACACCGTGACGCGTCGCGG CACCGACATGACGGAATACCTGCTGTGCGCGCCCGTGATGCTGGCCGGCGAGGACGTTCCGGTGCGCAGCCTGCTTGGCA AGCTCGTGCGCACGACGCTGACCGGCAAGCGCGGCCCGCTGATGCCCGACGACCTGCCGCGCTTCCCGGTTCGCCAGTGG CTCGAATTCCTCGCCGGCCTCGACAAGCGCGCCGTGTCCGACCAGTACGCGACGCTGCGCGACAAGGCGCTGGCCAACTG CCGCGCGAGCGGCGAGGACGACGGCGCCAAGCGGATGGCCGGCAACTATGCGGCAGTCGCCTTGGCCTGGCGCTACCTGT GCGAGTTCGCCGGCATGGACCCGAGCGAAGGCGACTTCCCACGCGACCTGCTCGCCGAAATGAACGGCCACATCGCCGAG ACGAGCGCCGATCGAGAGCCGTGGGTCTGGATCATGGAAACCGCGCTGTCGGAAATGGACTGCGGCAACTACAAGCACCC GTACACCTTCGACACCGTGGACGGCGAGTTCTGCCTGCTCATCAACACCGGCCACGTGATGGACCACATCGCCCATACGA GCGCGCTACGCGACAAATGGAACGGCCTGCCCGTGAAATCCGACCGTGTGTTCAAGGCGCAGCTCAAGCACGCCGGCGTC ATCGTCGGCGACAAGGAAGTCGAACGCCGCATCTACACGCGCCGCGTGCGCTACCTCACGCCAATCTCGCTCGAGCGCCT GGCCGCATTCGGCCTGCACGTGTCCATCCGCGAAGACCTGGCCACCGACGCACTGCAAGGGGGGGCCGCCGCGTGA
Upstream 100 bases:
>100_bases TTGCCTTCCCCGCGTCGGCCGGCGCGCTCCGCGCGCTCGTCGACAGCCCCGCGACACCCGGCAACCCTGCCGCCCTCTCC CTGCATCAACAGCACTAACG
Downstream 100 bases:
>100_bases CGCCCTCTCAGCCGATGCGGCCGCCGTGCGGCCGTACCCCTTCCCTCATTCTTTCCGGCCGCGTAGCGGCCCTGTATTCG GGTTTCCGGTGCGTGCGTCG
Product: CHC2-type zinc finger protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 931; Mature: 930
Protein sequence:
>931_residues MASIDELKQRIDLHDLADRLGLKRGRGGDRALYHSPQHDDKSPSLSIYVNHPKHGTGWRDHSADAGGSCIDLVIHARGGT VADAVRYLHDTYGIPLDRQAPAERREKTTVEYIADRCFAERDQARDYLVGRGISAAAIDAAIAARSLGFNTWTSSKVAAG EVGHAGSAAAFIVRAPGDGRVVAVDMRYVDPALNGGVKTQTQGDKAGYGWTADPRRLDKAKRVFIVESAINALSIDTCAM PGAAALALRGLANVDGIDFAFLRGKQVVICLDNDEPFADGHPRAGRRPGPEAAWALYERLTALNISAVLVDQANWFADLA DGEKAVKPINDVNDYLQLRGPADLQRALDQLEPWLIAGLAGDATRRGRPRIFLPSHDFAQYWRFRVRPDFTSYITKMDKN EESGVETPVMTDLCGFRIAGISRVSVASATSTMTGDADQAPTVYFAVSVQAPRHGAQLVRRVMLDDQLHNVDQWGKFGPI WAPAPFKRMVNILERGADLGARQAANFVGLAWRDGRLIVNEGPDCYFTEADKQCPYHNLTFPTGPASDARRVIAAYQATF KQNAATIPLVWALGGHLKALLGFWPHITIQANKGAGKSTLIKRLERSLAFTMFSGQSLQTEFRLLTSISHTSHPVGWEEL SARRQDVIDKAVGLLQENYQYTVTRRGTDMTEYLLCAPVMLAGEDVPVRSLLGKLVRTTLTGKRGPLMPDDLPRFPVRQW LEFLAGLDKRAVSDQYATLRDKALANCRASGEDDGAKRMAGNYAAVALAWRYLCEFAGMDPSEGDFPRDLLAEMNGHIAE TSADREPWVWIMETALSEMDCGNYKHPYTFDTVDGEFCLLINTGHVMDHIAHTSALRDKWNGLPVKSDRVFKAQLKHAGV IVGDKEVERRIYTRRVRYLTPISLERLAAFGLHVSIREDLATDALQGGAAA
Sequences:
>Translated_931_residues MASIDELKQRIDLHDLADRLGLKRGRGGDRALYHSPQHDDKSPSLSIYVNHPKHGTGWRDHSADAGGSCIDLVIHARGGT VADAVRYLHDTYGIPLDRQAPAERREKTTVEYIADRCFAERDQARDYLVGRGISAAAIDAAIAARSLGFNTWTSSKVAAG EVGHAGSAAAFIVRAPGDGRVVAVDMRYVDPALNGGVKTQTQGDKAGYGWTADPRRLDKAKRVFIVESAINALSIDTCAM PGAAALALRGLANVDGIDFAFLRGKQVVICLDNDEPFADGHPRAGRRPGPEAAWALYERLTALNISAVLVDQANWFADLA DGEKAVKPINDVNDYLQLRGPADLQRALDQLEPWLIAGLAGDATRRGRPRIFLPSHDFAQYWRFRVRPDFTSYITKMDKN EESGVETPVMTDLCGFRIAGISRVSVASATSTMTGDADQAPTVYFAVSVQAPRHGAQLVRRVMLDDQLHNVDQWGKFGPI WAPAPFKRMVNILERGADLGARQAANFVGLAWRDGRLIVNEGPDCYFTEADKQCPYHNLTFPTGPASDARRVIAAYQATF KQNAATIPLVWALGGHLKALLGFWPHITIQANKGAGKSTLIKRLERSLAFTMFSGQSLQTEFRLLTSISHTSHPVGWEEL SARRQDVIDKAVGLLQENYQYTVTRRGTDMTEYLLCAPVMLAGEDVPVRSLLGKLVRTTLTGKRGPLMPDDLPRFPVRQW LEFLAGLDKRAVSDQYATLRDKALANCRASGEDDGAKRMAGNYAAVALAWRYLCEFAGMDPSEGDFPRDLLAEMNGHIAE TSADREPWVWIMETALSEMDCGNYKHPYTFDTVDGEFCLLINTGHVMDHIAHTSALRDKWNGLPVKSDRVFKAQLKHAGV IVGDKEVERRIYTRRVRYLTPISLERLAAFGLHVSIREDLATDALQGGAAA >Mature_930_residues ASIDELKQRIDLHDLADRLGLKRGRGGDRALYHSPQHDDKSPSLSIYVNHPKHGTGWRDHSADAGGSCIDLVIHARGGTV ADAVRYLHDTYGIPLDRQAPAERREKTTVEYIADRCFAERDQARDYLVGRGISAAAIDAAIAARSLGFNTWTSSKVAAGE VGHAGSAAAFIVRAPGDGRVVAVDMRYVDPALNGGVKTQTQGDKAGYGWTADPRRLDKAKRVFIVESAINALSIDTCAMP GAAALALRGLANVDGIDFAFLRGKQVVICLDNDEPFADGHPRAGRRPGPEAAWALYERLTALNISAVLVDQANWFADLAD GEKAVKPINDVNDYLQLRGPADLQRALDQLEPWLIAGLAGDATRRGRPRIFLPSHDFAQYWRFRVRPDFTSYITKMDKNE ESGVETPVMTDLCGFRIAGISRVSVASATSTMTGDADQAPTVYFAVSVQAPRHGAQLVRRVMLDDQLHNVDQWGKFGPIW APAPFKRMVNILERGADLGARQAANFVGLAWRDGRLIVNEGPDCYFTEADKQCPYHNLTFPTGPASDARRVIAAYQATFK QNAATIPLVWALGGHLKALLGFWPHITIQANKGAGKSTLIKRLERSLAFTMFSGQSLQTEFRLLTSISHTSHPVGWEELS ARRQDVIDKAVGLLQENYQYTVTRRGTDMTEYLLCAPVMLAGEDVPVRSLLGKLVRTTLTGKRGPLMPDDLPRFPVRQWL EFLAGLDKRAVSDQYATLRDKALANCRASGEDDGAKRMAGNYAAVALAWRYLCEFAGMDPSEGDFPRDLLAEMNGHIAET SADREPWVWIMETALSEMDCGNYKHPYTFDTVDGEFCLLINTGHVMDHIAHTSALRDKWNGLPVKSDRVFKAQLKHAGVI VGDKEVERRIYTRRVRYLTPISLERLAAFGLHVSIREDLATDALQGGAAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 102396; Mature: 102265
Theoretical pI: Translated: 7.38; Mature: 7.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASIDELKQRIDLHDLADRLGLKRGRGGDRALYHSPQHDDKSPSLSIYVNHPKHGTGWRD CCCHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC HSADAGGSCIDLVIHARGGTVADAVRYLHDTYGIPLDRQAPAERREKTTVEYIADRCFAE CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH RDQARDYLVGRGISAAAIDAAIAARSLGFNTWTSSKVAAGEVGHAGSAAAFIVRAPGDGR HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC VVAVDMRYVDPALNGGVKTQTQGDKAGYGWTADPRRLDKAKRVFIVESAINALSIDTCAM EEEEEEEECCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHEEEEEEHHHHHEECHHHCC PGAAALALRGLANVDGIDFAFLRGKQVVICLDNDEPFADGHPRAGRRPGPEAAWALYERL CCHHHHHHHHCCCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH TALNISAVLVDQANWFADLADGEKAVKPINDVNDYLQLRGPADLQRALDQLEPWLIAGLA HHHCEEEEEEECCCHHHHHCCCHHHHCCHHHHHHHHCCCCCHHHHHHHHHCCCEEEEECC GDATRRGRPRIFLPSHDFAQYWRFRVRPDFTSYITKMDKNEESGVETPVMTDLCGFRIAG CCCCCCCCCEEECCCCHHHHHHEEECCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC ISRVSVASATSTMTGDADQAPTVYFAVSVQAPRHGAQLVRRVMLDDQLHNVDQWGKFGPI CCCEEHHHCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCHHHCCCCCCC WAPAPFKRMVNILERGADLGARQAANFVGLAWRDGRLIVNEGPDCYFTEADKQCPYHNLT CCCHHHHHHHHHHHCCCCCCHHHHCCEEEEEEECCEEEEECCCCEEEECCCCCCCCCCCC FPTGPASDARRVIAAYQATFKQNAATIPLVWALGGHLKALLGFWPHITIQANKGAGKSTL CCCCCCHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCEEEEEECCCCCHHHH IKRLERSLAFTMFSGQSLQTEFRLLTSISHTSHPVGWEELSARRQDVIDKAVGLLQENYQ HHHHHHHHEEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCE YTVTRRGTDMTEYLLCAPVMLAGEDVPVRSLLGKLVRTTLTGKRGPLMPDDLPRFPVRQW EEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH LEFLAGLDKRAVSDQYATLRDKALANCRASGEDDGAKRMAGNYAAVALAWRYLCEFAGMD HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCC PSEGDFPRDLLAEMNGHIAETSADREPWVWIMETALSEMDCGNYKHPYTFDTVDGEFCLL CCCCCCCHHHHHHCCCCEEECCCCCCCEEEHHHHHHHHCCCCCCCCCEEEECCCCCEEEE INTGHVMDHIAHTSALRDKWNGLPVKSDRVFKAQLKHAGVIVGDKEVERRIYTRRVRYLT EECCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCEEECCHHHHHHHHHHHHHHCC PISLERLAAFGLHVSIREDLATDALQGGAAA CCCHHHHHHHCCEEEEHHHHHHHHHCCCCCC >Mature Secondary Structure ASIDELKQRIDLHDLADRLGLKRGRGGDRALYHSPQHDDKSPSLSIYVNHPKHGTGWRD CCHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC HSADAGGSCIDLVIHARGGTVADAVRYLHDTYGIPLDRQAPAERREKTTVEYIADRCFAE CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH RDQARDYLVGRGISAAAIDAAIAARSLGFNTWTSSKVAAGEVGHAGSAAAFIVRAPGDGR HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC VVAVDMRYVDPALNGGVKTQTQGDKAGYGWTADPRRLDKAKRVFIVESAINALSIDTCAM EEEEEEEECCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHEEEEEEHHHHHEECHHHCC PGAAALALRGLANVDGIDFAFLRGKQVVICLDNDEPFADGHPRAGRRPGPEAAWALYERL CCHHHHHHHHCCCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH TALNISAVLVDQANWFADLADGEKAVKPINDVNDYLQLRGPADLQRALDQLEPWLIAGLA HHHCEEEEEEECCCHHHHHCCCHHHHCCHHHHHHHHCCCCCHHHHHHHHHCCCEEEEECC GDATRRGRPRIFLPSHDFAQYWRFRVRPDFTSYITKMDKNEESGVETPVMTDLCGFRIAG CCCCCCCCCEEECCCCHHHHHHEEECCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC ISRVSVASATSTMTGDADQAPTVYFAVSVQAPRHGAQLVRRVMLDDQLHNVDQWGKFGPI CCCEEHHHCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCHHHCCCCCCC WAPAPFKRMVNILERGADLGARQAANFVGLAWRDGRLIVNEGPDCYFTEADKQCPYHNLT CCCHHHHHHHHHHHCCCCCCHHHHCCEEEEEEECCEEEEECCCCEEEECCCCCCCCCCCC FPTGPASDARRVIAAYQATFKQNAATIPLVWALGGHLKALLGFWPHITIQANKGAGKSTL CCCCCCHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCEEEEEECCCCCHHHH IKRLERSLAFTMFSGQSLQTEFRLLTSISHTSHPVGWEELSARRQDVIDKAVGLLQENYQ HHHHHHHHEEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCE YTVTRRGTDMTEYLLCAPVMLAGEDVPVRSLLGKLVRTTLTGKRGPLMPDDLPRFPVRQW EEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH LEFLAGLDKRAVSDQYATLRDKALANCRASGEDDGAKRMAGNYAAVALAWRYLCEFAGMD HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCC PSEGDFPRDLLAEMNGHIAETSADREPWVWIMETALSEMDCGNYKHPYTFDTVDGEFCLL CCCCCCCHHHHHHCCCCEEECCCCCCCEEEHHHHHHHHCCCCCCCCCEEEECCCCCEEEE INTGHVMDHIAHTSALRDKWNGLPVKSDRVFKAQLKHAGVIVGDKEVERRIYTRRVRYLT EECCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCEEECCHHHHHHHHHHHHHHCC PISLERLAAFGLHVSIREDLATDALQGGAAA CCCHHHHHHHCCEEEEHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA