| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is ugpE [H]
Identifier: 238025982
GI number: 238025982
Start: 324773
End: 325618
Strand: Direct
Name: ugpE [H]
Synonym: bglu_1g03080
Alternate gene names: 238025982
Gene position: 324773-325618 (Clockwise)
Preceding gene: 238025981
Following gene: 238025983
Centisome position: 8.31
GC content: 65.37
Gene sequence:
>846_bases ATGATCGAGAATCGCAAGGGCTTCGACCGGTTCTGTCACGCGGTGCTGATCGCAGGCGCCGCGCTCCTGCTGTTTCCCGT CTACGTGGGCTTTTGCGCCGCGACGATGAGTTCGGCCGAGGTGTTCACGGTGCCGATGTCGCTGGTGCCGAGCACGCACC TGTTCGAGAACATCGCCACCATCTGGCATCGCGGCAGCGGCGCCACCACCGCGCCGTTCGGCGTGCTGCTGATGAACAGC CTGGTGATGGCGCTGGCAATCGCGTTCGGCAAGATCGCCGTGTCGATCCTGTCGGCCTACGCGATCGTCTACTTCCGCTT CCCGCTGCGCAACGCCGCGTTCTGGGTGATCTTCGTCACGCTGATGCTGCCGGTGGAGGTGCGCATCTTCCCGACCGTGC AGGTGGTGTCCACGCTCGGCATGACCAACGGCTACGCGGGCCTGACGCTGCCGCTGATGGCCTCGGCCACGGCCACCTTC CTGTTCCGGCAGTTCTTCATGACGCTGCCCGACGAGCTGATGGACGCCGCCCGAATCGACGGGGCCGGGCCGCTGCGCTT CTTCTGGGACGTGGTGCTGCCGCTGTCGCACACCAGCATCGCGGCGCTGTTCGTGATCACCTTCATCTACGGCTGGAACC AGTATTTGTGGCCGATCCTGATCACCACCGACGGCGCGATGTCCACCGCCGTGGTCGGCATCAAGACCATGATCGCGAGC GGCGACGCGGCCACCGAATGGCATCTCGTGATGGCCGCCACGCTGCTGACGATGCTGCCGCCGCTGGTGGTGGTGCTGGC GATGCAGCGCTGGTTCGTGCGCGGCCTGGTGGACACCGAAAAATAA
Upstream 100 bases:
>100_bases ACATCGGCAGCTCGGGCGCGCAGTCGGTGGTGCTGATGGTGATCGTGGTCGCGCTGACCGTGGTGCAATTCCGCTTCGTC GAACGCCGGGTGCAATACGC
Downstream 100 bases:
>100_bases CCCGCTTTATCCGGAGAGTTGCGAAGCATGGCTGCACTGAGCTTGAACGGCGTCAGGAAGACCTATGACGGCAAGCATGC CGTGCTGCACGGCATCGACG
Product: glycerol-3-phosphate transporter membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 281; Mature: 281
Protein sequence:
>281_residues MIENRKGFDRFCHAVLIAGAALLLFPVYVGFCAATMSSAEVFTVPMSLVPSTHLFENIATIWHRGSGATTAPFGVLLMNS LVMALAIAFGKIAVSILSAYAIVYFRFPLRNAAFWVIFVTLMLPVEVRIFPTVQVVSTLGMTNGYAGLTLPLMASATATF LFRQFFMTLPDELMDAARIDGAGPLRFFWDVVLPLSHTSIAALFVITFIYGWNQYLWPILITTDGAMSTAVVGIKTMIAS GDAATEWHLVMAATLLTMLPPLVVVLAMQRWFVRGLVDTEK
Sequences:
>Translated_281_residues MIENRKGFDRFCHAVLIAGAALLLFPVYVGFCAATMSSAEVFTVPMSLVPSTHLFENIATIWHRGSGATTAPFGVLLMNS LVMALAIAFGKIAVSILSAYAIVYFRFPLRNAAFWVIFVTLMLPVEVRIFPTVQVVSTLGMTNGYAGLTLPLMASATATF LFRQFFMTLPDELMDAARIDGAGPLRFFWDVVLPLSHTSIAALFVITFIYGWNQYLWPILITTDGAMSTAVVGIKTMIAS GDAATEWHLVMAATLLTMLPPLVVVLAMQRWFVRGLVDTEK >Mature_281_residues MIENRKGFDRFCHAVLIAGAALLLFPVYVGFCAATMSSAEVFTVPMSLVPSTHLFENIATIWHRGSGATTAPFGVLLMNS LVMALAIAFGKIAVSILSAYAIVYFRFPLRNAAFWVIFVTLMLPVEVRIFPTVQVVSTLGMTNGYAGLTLPLMASATATF LFRQFFMTLPDELMDAARIDGAGPLRFFWDVVLPLSHTSIAALFVITFIYGWNQYLWPILITTDGAMSTAVVGIKTMIAS GDAATEWHLVMAATLLTMLPPLVVVLAMQRWFVRGLVDTEK
Specific function: Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0395
COG function: function code G; ABC-type sugar transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1789860, Length=281, Percent_Identity=66.5480427046263, Blast_Score=384, Evalue=1e-108, Organism=Escherichia coli, GI1787571, Length=284, Percent_Identity=25.7042253521127, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1790464, Length=217, Percent_Identity=29.0322580645161, Blast_Score=66, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 30774; Mature: 30774
Theoretical pI: Translated: 7.63; Mature: 7.63
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 5.3 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 5.3 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIENRKGFDRFCHAVLIAGAALLLFPVYVGFCAATMSSAEVFTVPMSLVPSTHLFENIAT CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHCCHHHHHHHHHH IWHRGSGATTAPFGVLLMNSLVMALAIAFGKIAVSILSAYAIVYFRFPLRNAAFWVIFVT HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH LMLPVEVRIFPTVQVVSTLGMTNGYAGLTLPLMASATATFLFRQFFMTLPDELMDAARID HHHHHHEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC GAGPLRFFWDVVLPLSHTSIAALFVITFIYGWNQYLWPILITTDGAMSTAVVGIKTMIAS CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHEEEEEEECCCCHHHHHHHHHHHHHC GDAATEWHLVMAATLLTMLPPLVVVLAMQRWFVRGLVDTEK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MIENRKGFDRFCHAVLIAGAALLLFPVYVGFCAATMSSAEVFTVPMSLVPSTHLFENIAT CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHCCHHHHHHHHHH IWHRGSGATTAPFGVLLMNSLVMALAIAFGKIAVSILSAYAIVYFRFPLRNAAFWVIFVT HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH LMLPVEVRIFPTVQVVSTLGMTNGYAGLTLPLMASATATFLFRQFFMTLPDELMDAARID HHHHHHEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC GAGPLRFFWDVVLPLSHTSIAALFVITFIYGWNQYLWPILITTDGAMSTAVVGIKTMIAS CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHEEEEEEECCCCHHHHHHHHHHHHHC GDAATEWHLVMAATLLTMLPPLVVVLAMQRWFVRGLVDTEK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA