| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238025909
Identifier: 238025909
GI number: 238025909
Start: 249599
End: 250231
Strand: Reverse
Name: 238025909
Synonym: bglu_1g02350
Alternate gene names: NA
Gene position: 250231-249599 (Counterclockwise)
Preceding gene: 238025910
Following gene: 238025908
Centisome position: 6.41
GC content: 65.72
Gene sequence:
>633_bases ATGGCCCGCACCCGAGCGCCCGACCACGAATCCCAGCGCGAGCAGATCCTCGATCTCGCCGCCAGCAAATTCGCGCAAAC CAGCTACCCGAGCACCTCGATGACCGACCTCGCCGCCGCGAGCGGTACCTCGAAGGCGCGTCTCTACCACTACTACGAAA GCAAGGAAGCGATCCTGTTCGACCTGCTCGACCGCTATACCAAGCGGCTGATGCTGATCATCGCGGAAGTCCAGGGCACC AGCCAGCGGCGCGGGCTCAGCGAGCGCGAGGCGTTCGCCGAACTGATCCGCGCATTCCTCTCCGAATATGAGACGTCGCA CAGCCGGCATGTCGCGCTGCTCAACGACGTGAAATATCTGGAAAACACGCAGCGTCAGGTGATCCTCGACCGGCAGCGCG ACATCGTCGCCGCGTTCACGCGCCAGATCGAGCGTGCCTATCCCGGGCGCGTGTCGCGCGAGAACCAGACGGCCGTCACG ATGATGGTGTTCGGCATGATCAACTGGACCTTCACTTGGCTGAAGCCGGGCGGGCGCCTCGGCTACCGCGACTTCGCCGA GCAGGTGATCGGGTTGATCGAGCGCGGGCTCGGCGGCGAGAACGCGGGCGCGGACCCGACGCGCGCGGCCTGA
Upstream 100 bases:
>100_bases CTCGCTGCGCGCGGTACCGGCCGCCGCGCCGCGCTGAGCGCCACCGCTGCCTTCGTCCACCGCGGCAGGCCCGCCGCCCC GATCCGACTCCACCAACGCC
Downstream 100 bases:
>100_bases ACGGCGCCGTCCACGCCCAGGCAGGCCGGCGCCGAGCGTTGTGGCGAGGTCACACGCCGAATTTCGGTCGATGAAATAAT TGCTTTTAAATCAACAACTT
Product: putative TetR-family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator TetR Family; Transcription Regulator Protein; Transcriptional Regulator Of Paa Operon; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator Tetr Family; Paa Operon Transcriptional Regulator; TetR-Family Transcriptional Regulator; Regulatory Protein TetR; TetR Family Transcriptional Repressor; TetR/AcrR Family Transcriptional Regulator; TetR-Family Trasncriptional Regulator; TetR Family Regulatory
Number of amino acids: Translated: 210; Mature: 209
Protein sequence:
>210_residues MARTRAPDHESQREQILDLAASKFAQTSYPSTSMTDLAAASGTSKARLYHYYESKEAILFDLLDRYTKRLMLIIAEVQGT SQRRGLSEREAFAELIRAFLSEYETSHSRHVALLNDVKYLENTQRQVILDRQRDIVAAFTRQIERAYPGRVSRENQTAVT MMVFGMINWTFTWLKPGGRLGYRDFAEQVIGLIERGLGGENAGADPTRAA
Sequences:
>Translated_210_residues MARTRAPDHESQREQILDLAASKFAQTSYPSTSMTDLAAASGTSKARLYHYYESKEAILFDLLDRYTKRLMLIIAEVQGT SQRRGLSEREAFAELIRAFLSEYETSHSRHVALLNDVKYLENTQRQVILDRQRDIVAAFTRQIERAYPGRVSRENQTAVT MMVFGMINWTFTWLKPGGRLGYRDFAEQVIGLIERGLGGENAGADPTRAA >Mature_209_residues ARTRAPDHESQREQILDLAASKFAQTSYPSTSMTDLAAASGTSKARLYHYYESKEAILFDLLDRYTKRLMLIIAEVQGTS QRRGLSEREAFAELIRAFLSEYETSHSRHVALLNDVKYLENTQRQVILDRQRDIVAAFTRQIERAYPGRVSRENQTAVTM MVFGMINWTFTWLKPGGRLGYRDFAEQVIGLIERGLGGENAGADPTRAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23843; Mature: 23712
Theoretical pI: Translated: 9.22; Mature: 9.22
Prosite motif: PS50977 HTH_TETR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARTRAPDHESQREQILDLAASKFAQTSYPSTSMTDLAAASGTSKARLYHYYESKEAILF CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHEEHHCCCHHHHH DLLDRYTKRLMLIIAEVQGTSQRRGLSEREAFAELIRAFLSEYETSHSRHVALLNDVKYL HHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH ENTQRQVILDRQRDIVAAFTRQIERAYPGRVSRENQTAVTMMVFGMINWTFTWLKPGGRL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHEEEEECCCCCC GYRDFAEQVIGLIERGLGGENAGADPTRAA CHHHHHHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure ARTRAPDHESQREQILDLAASKFAQTSYPSTSMTDLAAASGTSKARLYHYYESKEAILF CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHEEHHCCCHHHHH DLLDRYTKRLMLIIAEVQGTSQRRGLSEREAFAELIRAFLSEYETSHSRHVALLNDVKYL HHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH ENTQRQVILDRQRDIVAAFTRQIERAYPGRVSRENQTAVTMMVFGMINWTFTWLKPGGRL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHEEEEECCCCCC GYRDFAEQVIGLIERGLGGENAGADPTRAA CHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA