| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238025787
Identifier: 238025787
GI number: 238025787
Start: 125175
End: 127970
Strand: Reverse
Name: 238025787
Synonym: bglu_1g01120
Alternate gene names: NA
Gene position: 127970-125175 (Counterclockwise)
Preceding gene: 238025788
Following gene: 238025786
Centisome position: 3.28
GC content: 68.31
Gene sequence:
>2796_bases ATGGCCTCGATCGACGAACTGAAACAGCGCATCGACCTGCACGACCTGGCCGACCGCCTCGGCATGAAGCGCGGCCGCGG CGGCGATCGTGCGCTCTACCACTCGCCGCAGCACGAGGACAAGAGCCCGTCGCTGTCCATCTTCGTCAACCACCCGAAGC ACGGCACCGGCTGGCGCGACCACAGCGCCGACACGGGCGGATCCTGCGTGGATCTCGTCATGTACGCCCGCGGCGGATCC GTCGCCGATGCCGTGCGCTACCTCCACGACGCCTACGGCATCCCCACCACGGCGCCGGCCGCTGCCGGCGAGCGCCGCGA GAAATCGAAGATCGATTACATCGCCGACAAGTGCCTGGCCGAGCGCGACGGCGCCCGCGCCTATCTCGCCGGCCGGGGCA TTTCGGCGGCCGCGATCGATGCAGCGATCGCCGCGCGATCGCTCGGCTTCAACACCTGGACGAGCTCGAAGGTGGCCGCC GGCGAAGTCGGCCATGCCGGGCCGGCCGCCGCGTTCGTGGTGCGCTCGCCGCACGACGGCCGCGTGGTAGCCGTCGACAT GCGCTACCTCGATCCCGCCATCAATGGCGGCGTCAAGACGCAGACGCAGGGCGACAAAGCCGGCTTCGGCTGGACGGCCG ATCCGCGCCGGCTCGCCAAGGCCAAGCGCGTCTACGTCGTCGAAAGCGCGATCAATGCCCTGTCGATCGACAGCTGCGCG CTGCCCGGCGCCGCCGCGCTCGCGCTGCGCGGCTTGGCGAACGTCGGCGACATCGATTTCACGTTTCTCCGTGGCCGCCA GGTCGTCATCTGCCTGGACAACGATGAACCGTTCGGCGACGGCCACCCGCGCGCCGGCCACCGGCCTGGCCCTGAAGCTG CCTGGGCGCTCTACGAACGCCTGACGAGCCTGAATATCAGCGCAGTGCTGGTCGACCAGGCCGAGTGGCTGGCCGACCTC GGCGACGGCGAAGCGAAGGCAAAGCCGATCAACGACGTGAACGACTACCTGCAGGTGCGCGGCGCCGACCAGCTCGGGCG CGCGCTCGACCAGCTCGAACCGTGGTTGATCGCCGGCCTGGCCGGCGACGCCACGCGCCGCGGCCGGCCGCGCATCTTCC TGCCCTCGCACGATTTCGCGCAGTATTGGCGCTTCCGCGTGCGGCCCGACTTCACCAGCTACATCACGAAGATGGACCGC AACGAGGAATCGGGCGTGGAAACGCCCGTCATGACCGACCTGTGCGGCTTCCGGATCGCCGGCATTAGCCGCGTGTCCGT GGCGAGCGCGACGGCCACCATGACGGGCGACGACGACCAGGCGCCGACCGTCTATTTCGCTGTCTCCGTGCAGGCGCCGC GGCACGGCCCGCAGCTGATTCGCCGCGTGATGCTCGACGACCAGCTGCACAACGTCGACCAGTGGGGCAAGTTCGGTCCG ATCTGGGCACCGGCGCCGTTTAAGCGCATGGTCAACATCCTGGAGCGCGGCGCCGACCTCGGCGCGCGCCAGGCCGCCAA TTTCGTCGGCCTGGCCTGGCGCGATGGCCGGCTGATCGTCAACGAAGGCCCCGACTGCTATTTCACCGAAGCCGACAAGC AGTGCCCGTATCACAACCTGACCTTCCCCAGCGGCCCGATCGGCGACGCGCGCCGCGTGATCACGGCCTATCAGGCGACG TTCAAGCAGAACGCGGCCACCATCCCCTTGGTATGGGCGCTCGGCGGCCACCTGAAGGCGCTGCTGGGCTTCTGGCCGCA CATGACCGTGCAGGCCAACAAGGGCGCCGGCAAGTCGACGCTGATCAAGCGCCTGGAACGCTCGCTGGCCTTCACCATGT TTTCCGGCCAGTCCCTGCAGACCGAATTCCGGCTGCTGACCAGCATTAGCCACACGAGCCACCCGGTCGGCTGGGAAGAA CTGTCCGCGCGCCGGCAAGACGTGATCGACAAGGCCGTGGGCCTGCTGCAAGAGAACTACCAGTACACCGTCACCCGCCG CGGCACCGACATGACCGAATACCTGTTGTGCGCGCCCGTGATGCTGGCCGGCGAGGATGTGCCCGTGCGCAGCTTGCTCG GCAAGCTGGTGCGCACCACGCTGACCGGCAAGCGCGGCCCGCTGCTGCCCGACGACCTGCCCCGCTTCCCAGTTCGACAG TGGCTCGAATTCCTCGCCGGCCTGGATAAGCGCAGCGTGCTGGACCAGTACGGCAAGCTGCGCGACAAGGCGCTGGCCAA CTGCCGCGCGAGCGGCGAGGATGACGGCGCCAAGCGGATGGCCGGCAACTACGCGGCGCTCGCGCTGGCCTGGCGCTACC TATGCGACTTCGCCGGCATGGACCCGAGCGAAGGCGACTTTCCCCGCGACCTGCTGACCGAAATGAACGGCCACGTCGCC GAAACCAGCGCCGACCGCGAGCCCTGGGTCTGGATCATGGAAACGATCCTGTCGGAAATCGACGGCGGCAACTACAAGCA CCCCTTCACGTTCGATACCGTCGACGGCGAGTTCTGCCTGCTGCTGCGCTCCGGGCATGTGATGGACCACATCGCCCATA CCAGCTCGCTGCGCGACAAGTGGAACGGCCTGCCGGTCAAGTCCGATCGCGTGTTCAAGGCGCAGCTCAAGCACGCCGGC GTCGTCGTCGGCGAAAAAGAGGTGGAGCGACGCATCTACACCCGCCGCGTGGCGCACCTGGTGCCGATTTCCCTGGAGCG CCTGGCCGCCTTCGGCCTCTACGTGTCCGTGCGCGAGGACCTGGCCAGCGACGCTTTGCAGGGCGCAGCCGCATGA
Upstream 100 bases:
>100_bases CTGGCCTTCCCCGAGTCGGCCGAAGCGCTGCACGCCCTTGTCCTTTCCCCGGCCACCACCGGCAACCCGACCCAAGCAAC ACCGGAGCACCAGCAATAAG
Downstream 100 bases:
>100_bases CCCGCTCTCACCGCCCGCGGCCGCCGTGCGGCCGCTGCCCTTACCCCGCATTTTCCGGCCGCGCAGCGGCCCTGAATTCG GCCTTCCCGTGCGCGCCGGC
Product: CHC2-type zinc finger protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 931; Mature: 930
Protein sequence:
>931_residues MASIDELKQRIDLHDLADRLGMKRGRGGDRALYHSPQHEDKSPSLSIFVNHPKHGTGWRDHSADTGGSCVDLVMYARGGS VADAVRYLHDAYGIPTTAPAAAGERREKSKIDYIADKCLAERDGARAYLAGRGISAAAIDAAIAARSLGFNTWTSSKVAA GEVGHAGPAAAFVVRSPHDGRVVAVDMRYLDPAINGGVKTQTQGDKAGFGWTADPRRLAKAKRVYVVESAINALSIDSCA LPGAAALALRGLANVGDIDFTFLRGRQVVICLDNDEPFGDGHPRAGHRPGPEAAWALYERLTSLNISAVLVDQAEWLADL GDGEAKAKPINDVNDYLQVRGADQLGRALDQLEPWLIAGLAGDATRRGRPRIFLPSHDFAQYWRFRVRPDFTSYITKMDR NEESGVETPVMTDLCGFRIAGISRVSVASATATMTGDDDQAPTVYFAVSVQAPRHGPQLIRRVMLDDQLHNVDQWGKFGP IWAPAPFKRMVNILERGADLGARQAANFVGLAWRDGRLIVNEGPDCYFTEADKQCPYHNLTFPSGPIGDARRVITAYQAT FKQNAATIPLVWALGGHLKALLGFWPHMTVQANKGAGKSTLIKRLERSLAFTMFSGQSLQTEFRLLTSISHTSHPVGWEE LSARRQDVIDKAVGLLQENYQYTVTRRGTDMTEYLLCAPVMLAGEDVPVRSLLGKLVRTTLTGKRGPLLPDDLPRFPVRQ WLEFLAGLDKRSVLDQYGKLRDKALANCRASGEDDGAKRMAGNYAALALAWRYLCDFAGMDPSEGDFPRDLLTEMNGHVA ETSADREPWVWIMETILSEIDGGNYKHPFTFDTVDGEFCLLLRSGHVMDHIAHTSSLRDKWNGLPVKSDRVFKAQLKHAG VVVGEKEVERRIYTRRVAHLVPISLERLAAFGLYVSVREDLASDALQGAAA
Sequences:
>Translated_931_residues MASIDELKQRIDLHDLADRLGMKRGRGGDRALYHSPQHEDKSPSLSIFVNHPKHGTGWRDHSADTGGSCVDLVMYARGGS VADAVRYLHDAYGIPTTAPAAAGERREKSKIDYIADKCLAERDGARAYLAGRGISAAAIDAAIAARSLGFNTWTSSKVAA GEVGHAGPAAAFVVRSPHDGRVVAVDMRYLDPAINGGVKTQTQGDKAGFGWTADPRRLAKAKRVYVVESAINALSIDSCA LPGAAALALRGLANVGDIDFTFLRGRQVVICLDNDEPFGDGHPRAGHRPGPEAAWALYERLTSLNISAVLVDQAEWLADL GDGEAKAKPINDVNDYLQVRGADQLGRALDQLEPWLIAGLAGDATRRGRPRIFLPSHDFAQYWRFRVRPDFTSYITKMDR NEESGVETPVMTDLCGFRIAGISRVSVASATATMTGDDDQAPTVYFAVSVQAPRHGPQLIRRVMLDDQLHNVDQWGKFGP IWAPAPFKRMVNILERGADLGARQAANFVGLAWRDGRLIVNEGPDCYFTEADKQCPYHNLTFPSGPIGDARRVITAYQAT FKQNAATIPLVWALGGHLKALLGFWPHMTVQANKGAGKSTLIKRLERSLAFTMFSGQSLQTEFRLLTSISHTSHPVGWEE LSARRQDVIDKAVGLLQENYQYTVTRRGTDMTEYLLCAPVMLAGEDVPVRSLLGKLVRTTLTGKRGPLLPDDLPRFPVRQ WLEFLAGLDKRSVLDQYGKLRDKALANCRASGEDDGAKRMAGNYAALALAWRYLCDFAGMDPSEGDFPRDLLTEMNGHVA ETSADREPWVWIMETILSEIDGGNYKHPFTFDTVDGEFCLLLRSGHVMDHIAHTSSLRDKWNGLPVKSDRVFKAQLKHAG VVVGEKEVERRIYTRRVAHLVPISLERLAAFGLYVSVREDLASDALQGAAA >Mature_930_residues ASIDELKQRIDLHDLADRLGMKRGRGGDRALYHSPQHEDKSPSLSIFVNHPKHGTGWRDHSADTGGSCVDLVMYARGGSV ADAVRYLHDAYGIPTTAPAAAGERREKSKIDYIADKCLAERDGARAYLAGRGISAAAIDAAIAARSLGFNTWTSSKVAAG EVGHAGPAAAFVVRSPHDGRVVAVDMRYLDPAINGGVKTQTQGDKAGFGWTADPRRLAKAKRVYVVESAINALSIDSCAL PGAAALALRGLANVGDIDFTFLRGRQVVICLDNDEPFGDGHPRAGHRPGPEAAWALYERLTSLNISAVLVDQAEWLADLG DGEAKAKPINDVNDYLQVRGADQLGRALDQLEPWLIAGLAGDATRRGRPRIFLPSHDFAQYWRFRVRPDFTSYITKMDRN EESGVETPVMTDLCGFRIAGISRVSVASATATMTGDDDQAPTVYFAVSVQAPRHGPQLIRRVMLDDQLHNVDQWGKFGPI WAPAPFKRMVNILERGADLGARQAANFVGLAWRDGRLIVNEGPDCYFTEADKQCPYHNLTFPSGPIGDARRVITAYQATF KQNAATIPLVWALGGHLKALLGFWPHMTVQANKGAGKSTLIKRLERSLAFTMFSGQSLQTEFRLLTSISHTSHPVGWEEL SARRQDVIDKAVGLLQENYQYTVTRRGTDMTEYLLCAPVMLAGEDVPVRSLLGKLVRTTLTGKRGPLLPDDLPRFPVRQW LEFLAGLDKRSVLDQYGKLRDKALANCRASGEDDGAKRMAGNYAALALAWRYLCDFAGMDPSEGDFPRDLLTEMNGHVAE TSADREPWVWIMETILSEIDGGNYKHPFTFDTVDGEFCLLLRSGHVMDHIAHTSSLRDKWNGLPVKSDRVFKAQLKHAGV VVGEKEVERRIYTRRVAHLVPISLERLAAFGLYVSVREDLASDALQGAAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 102082; Mature: 101951
Theoretical pI: Translated: 7.53; Mature: 7.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASIDELKQRIDLHDLADRLGMKRGRGGDRALYHSPQHEDKSPSLSIFVNHPKHGTGWRD CCCHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC HSADTGGSCVDLVMYARGGSVADAVRYLHDAYGIPTTAPAAAGERREKSKIDYIADKCLA CCCCCCCCCEEHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH ERDGARAYLAGRGISAAAIDAAIAARSLGFNTWTSSKVAAGEVGHAGPAAAFVVRSPHDG HCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC RVVAVDMRYLDPAINGGVKTQTQGDKAGFGWTADPRRLAKAKRVYVVESAINALSIDSCA CEEEEEHHHHCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHEEEEHHHHHHCCCCCCC LPGAAALALRGLANVGDIDFTFLRGRQVVICLDNDEPFGDGHPRAGHRPGPEAAWALYER CCHHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH LTSLNISAVLVDQAEWLADLGDGEAKAKPINDVNDYLQVRGADQLGRALDQLEPWLIAGL HHHCCCEEEEECCHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCEEEEEC AGDATRRGRPRIFLPSHDFAQYWRFRVRPDFTSYITKMDRNEESGVETPVMTDLCGFRIA CCCCCCCCCCEEECCCCHHHHHHHEECCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHC GISRVSVASATATMTGDDDQAPTVYFAVSVQAPRHGPQLIRRVMLDDQLHNVDQWGKFGP CCCCEEEHHCEEEECCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCHHHCCCCCC IWAPAPFKRMVNILERGADLGARQAANFVGLAWRDGRLIVNEGPDCYFTEADKQCPYHNL CCCCHHHHHHHHHHHCCCCCCHHHHCCEEEEEEECCEEEEECCCCEEEECCCCCCCCCCC TFPSGPIGDARRVITAYQATFKQNAATIPLVWALGGHLKALLGFWPHMTVQANKGAGKST CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCCEEEEECCCCCHHH LIKRLERSLAFTMFSGQSLQTEFRLLTSISHTSHPVGWEELSARRQDVIDKAVGLLQENY HHHHHHHHHHEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC QYTVTRRGTDMTEYLLCAPVMLAGEDVPVRSLLGKLVRTTLTGKRGPLLPDDLPRFPVRQ EEEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH WLEFLAGLDKRSVLDQYGKLRDKALANCRASGEDDGAKRMAGNYAALALAWRYLCDFAGM HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCC DPSEGDFPRDLLTEMNGHVAETSADREPWVWIMETILSEIDGGNYKHPFTFDTVDGEFCL CCCCCCCCHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEE LLRSGHVMDHIAHTSSLRDKWNGLPVKSDRVFKAQLKHAGVVVGEKEVERRIYTRRVAHL EEECCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCEEECHHHHHHHHHHHHHHHH VPISLERLAAFGLYVSVREDLASDALQGAAA CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure ASIDELKQRIDLHDLADRLGMKRGRGGDRALYHSPQHEDKSPSLSIFVNHPKHGTGWRD CCHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC HSADTGGSCVDLVMYARGGSVADAVRYLHDAYGIPTTAPAAAGERREKSKIDYIADKCLA CCCCCCCCCEEHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH ERDGARAYLAGRGISAAAIDAAIAARSLGFNTWTSSKVAAGEVGHAGPAAAFVVRSPHDG HCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC RVVAVDMRYLDPAINGGVKTQTQGDKAGFGWTADPRRLAKAKRVYVVESAINALSIDSCA CEEEEEHHHHCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHEEEEHHHHHHCCCCCCC LPGAAALALRGLANVGDIDFTFLRGRQVVICLDNDEPFGDGHPRAGHRPGPEAAWALYER CCHHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH LTSLNISAVLVDQAEWLADLGDGEAKAKPINDVNDYLQVRGADQLGRALDQLEPWLIAGL HHHCCCEEEEECCHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCEEEEEC AGDATRRGRPRIFLPSHDFAQYWRFRVRPDFTSYITKMDRNEESGVETPVMTDLCGFRIA CCCCCCCCCCEEECCCCHHHHHHHEECCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHC GISRVSVASATATMTGDDDQAPTVYFAVSVQAPRHGPQLIRRVMLDDQLHNVDQWGKFGP CCCCEEEHHCEEEECCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCHHHCCCCCC IWAPAPFKRMVNILERGADLGARQAANFVGLAWRDGRLIVNEGPDCYFTEADKQCPYHNL CCCCHHHHHHHHHHHCCCCCCHHHHCCEEEEEEECCEEEEECCCCEEEECCCCCCCCCCC TFPSGPIGDARRVITAYQATFKQNAATIPLVWALGGHLKALLGFWPHMTVQANKGAGKST CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCCEEEEECCCCCHHH LIKRLERSLAFTMFSGQSLQTEFRLLTSISHTSHPVGWEELSARRQDVIDKAVGLLQENY HHHHHHHHHHEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC QYTVTRRGTDMTEYLLCAPVMLAGEDVPVRSLLGKLVRTTLTGKRGPLLPDDLPRFPVRQ EEEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH WLEFLAGLDKRSVLDQYGKLRDKALANCRASGEDDGAKRMAGNYAALALAWRYLCDFAGM HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCC DPSEGDFPRDLLTEMNGHVAETSADREPWVWIMETILSEIDGGNYKHPFTFDTVDGEFCL CCCCCCCCHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEE LLRSGHVMDHIAHTSSLRDKWNGLPVKSDRVFKAQLKHAGVVVGEKEVERRIYTRRVAHL EEECCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCEEECHHHHHHHHHHHHHHHH VPISLERLAAFGLYVSVREDLASDALQGAAA CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA