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The map label for this gene is intD [H]

Identifier: 238025784

GI number: 238025784

Start: 123231

End: 124307

Strand: Reverse

Name: intD [H]

Synonym: bglu_1g01090

Alternate gene names: 238025784

Gene position: 124307-123231 (Counterclockwise)

Preceding gene: 238025785

Following gene: 238025783

Centisome position: 3.18

GC content: 68.52

Gene sequence:

>1077_bases
ATGTCGCTCTACAAACGGAAAACCAGTCCCAACTGGCAATACAAGCTGTACCCCCCTGGCGGCGGAGCGCCAGTACAGGG
CAGCACTGGCACCAGCAACAAGGAGCAGGCGCAAGAATTCCATGACCGGCTGAAGGTCGAGCTGTGGAACCAGGCGCGGC
TCGGCATCAAGCCGCGTTACACCTGGAACGATGCCGTGGTGCGCTACGTGACCGAGCGCGAGGGCCTGCCCAGCCTCGAA
ACCTCGAAAACGCACCTGCGCTGGCTCGACCGGCACCTGGCCGGCGTCGCGCTGGCCGACATCGACCGCGACCGGATCGA
TGCGATCGCGCTGGCGAAGCGTCGCGAACCGCTGACGGTGCGCACCAAGCAAGGCCCCGTCGCGATCGAGCGCACGGCCA
GCATCGGCACGGTGCGGCGCGTGGTCGGCGTGCTCAAGGCGGTACTGAACGCGGCGGTGGAGTGGGAATGGATCGACCGC
GCCCCCGTCACGGCGCGCGCCAAGCTGCCGGAAAAGCGGATCCGCTGGCTGACGCTCGACCAGGCCGAACGGCTGCTGGC
CGAGCTACCCGACCACCTGGCGGAAATGGCGCGGTTCAGTCTCGAGACTGGTTTGCGCCGCTCCAACGTGACCGGCCTGC
AATGGTCGCAAGTCGACATCGTGCGGCGCGTGGCCTGGATCCATCCCGACCAGGCGAAGGCGAAGAAGGCGATCACGGTG
CCGCTGTCGGACACGGCCATCGCGGTGCTGCTGCGCCAGCGCGCGGCCAAGCGGGCGCCGGCCTTCGTCGATAGCGTGTT
CGTCTACCGCGGCACGCCGGTCTACCAGACCTCGACGGCGGCCTGGCACAAGGCGCTGGCGCGGTGCGGGATCCGCGAGT
TCCGCTGGCACGACCTGCGCCATACCTGGGCGAGCTGGCATGTGCAGCGCGGCACGCCGTTGCAGGTGCTGAAGGAGCTG
GGCGGCTGGGAGACGATGGAGATGGTGCAGCGTTACGCCCACCTGTCGGCCGATCACCTGGCGCAGTGGGTCGCACCGCT
GACCGCTGCACCGGCGCCGCGGCTGGCTGCAATCTAG

Upstream 100 bases:

>100_bases
GCAAGTGCTGGATCTTTTCAACGGTTGCCCTGCAGCGCTACCTCGCCGGAGAATGGATCCCGCGAGTTGTGCAGGGCGAT
CACCCGGAGGAATCGAAATC

Downstream 100 bases:

>100_bases
CTGCAAAGAGGGAATCTGAAGCGGGGGGGAACTGCTGAAAGCCTTACTAGGCTTGGCGCGCCCGGCTGGGATCGAACCAG
CAACCCCTGCCTTCGGAGGG

Product: Site-specific recombinase, phage integrase family

Products: NA

Alternate protein names: Prophage QSR' integrase [H]

Number of amino acids: Translated: 358; Mature: 357

Protein sequence:

>358_residues
MSLYKRKTSPNWQYKLYPPGGGAPVQGSTGTSNKEQAQEFHDRLKVELWNQARLGIKPRYTWNDAVVRYVTEREGLPSLE
TSKTHLRWLDRHLAGVALADIDRDRIDAIALAKRREPLTVRTKQGPVAIERTASIGTVRRVVGVLKAVLNAAVEWEWIDR
APVTARAKLPEKRIRWLTLDQAERLLAELPDHLAEMARFSLETGLRRSNVTGLQWSQVDIVRRVAWIHPDQAKAKKAITV
PLSDTAIAVLLRQRAAKRAPAFVDSVFVYRGTPVYQTSTAAWHKALARCGIREFRWHDLRHTWASWHVQRGTPLQVLKEL
GGWETMEMVQRYAHLSADHLAQWVAPLTAAPAPRLAAI

Sequences:

>Translated_358_residues
MSLYKRKTSPNWQYKLYPPGGGAPVQGSTGTSNKEQAQEFHDRLKVELWNQARLGIKPRYTWNDAVVRYVTEREGLPSLE
TSKTHLRWLDRHLAGVALADIDRDRIDAIALAKRREPLTVRTKQGPVAIERTASIGTVRRVVGVLKAVLNAAVEWEWIDR
APVTARAKLPEKRIRWLTLDQAERLLAELPDHLAEMARFSLETGLRRSNVTGLQWSQVDIVRRVAWIHPDQAKAKKAITV
PLSDTAIAVLLRQRAAKRAPAFVDSVFVYRGTPVYQTSTAAWHKALARCGIREFRWHDLRHTWASWHVQRGTPLQVLKEL
GGWETMEMVQRYAHLSADHLAQWVAPLTAAPAPRLAAI
>Mature_357_residues
SLYKRKTSPNWQYKLYPPGGGAPVQGSTGTSNKEQAQEFHDRLKVELWNQARLGIKPRYTWNDAVVRYVTEREGLPSLET
SKTHLRWLDRHLAGVALADIDRDRIDAIALAKRREPLTVRTKQGPVAIERTASIGTVRRVVGVLKAVLNAAVEWEWIDRA
PVTARAKLPEKRIRWLTLDQAERLLAELPDHLAEMARFSLETGLRRSNVTGLQWSQVDIVRRVAWIHPDQAKAKKAITVP
LSDTAIAVLLRQRAAKRAPAFVDSVFVYRGTPVYQTSTAAWHKALARCGIREFRWHDLRHTWASWHVQRGTPLQVLKELG
GWETMEMVQRYAHLSADHLAQWVAPLTAAPAPRLAAI

Specific function: Integrase from the cryptic lambdoic prophage DLP12. Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=362, Percent_Identity=38.6740331491713, Blast_Score=252, Evalue=3e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 40625; Mature: 40494

Theoretical pI: Translated: 10.91; Mature: 10.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLYKRKTSPNWQYKLYPPGGGAPVQGSTGTSNKEQAQEFHDRLKVELWNQARLGIKPRY
CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
TWNDAVVRYVTEREGLPSLETSKTHLRWLDRHLAGVALADIDRDRIDAIALAKRREPLTV
CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEE
RTKQGPVAIERTASIGTVRRVVGVLKAVLNAAVEWEWIDRAPVTARAKLPEKRIRWLTLD
EECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCHHHCCCHHHHHEEEHH
QAERLLAELPDHLAEMARFSLETGLRRSNVTGLQWSQVDIVRRVAWIHPDQAKAKKAITV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCCEEEE
PLSDTAIAVLLRQRAAKRAPAFVDSVFVYRGTPVYQTSTAAWHKALARCGIREFRWHDLR
CCCHHHHHHHHHHHHHHCCCHHHHHHHEECCCCCEECCHHHHHHHHHHCCCHHHHHHHHH
HTWASWHVQRGTPLQVLKELGGWETMEMVQRYAHLSADHLAQWVAPLTAAPAPRLAAI
HHHHHEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SLYKRKTSPNWQYKLYPPGGGAPVQGSTGTSNKEQAQEFHDRLKVELWNQARLGIKPRY
CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
TWNDAVVRYVTEREGLPSLETSKTHLRWLDRHLAGVALADIDRDRIDAIALAKRREPLTV
CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEE
RTKQGPVAIERTASIGTVRRVVGVLKAVLNAAVEWEWIDRAPVTARAKLPEKRIRWLTLD
EECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCHHHCCCHHHHHEEEHH
QAERLLAELPDHLAEMARFSLETGLRRSNVTGLQWSQVDIVRRVAWIHPDQAKAKKAITV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCCEEEE
PLSDTAIAVLLRQRAAKRAPAFVDSVFVYRGTPVYQTSTAAWHKALARCGIREFRWHDLR
CCCHHHHHHHHHHHHHHCCCHHHHHHHEECCCCCEECCHHHHHHHHHHCCCHHHHHHHHH
HTWASWHVQRGTPLQVLKELGGWETMEMVQRYAHLSADHLAQWVAPLTAAPAPRLAAI
HHHHHEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2553674; 2183007; 9278503 [H]