| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is outE [H]
Identifier: 238025715
GI number: 238025715
Start: 35030
End: 36514
Strand: Reverse
Name: outE [H]
Synonym: bglu_1g00370
Alternate gene names: 238025715
Gene position: 36514-35030 (Counterclockwise)
Preceding gene: 238025716
Following gene: 238025714
Centisome position: 0.93
GC content: 70.64
Gene sequence:
>1485_bases GTGAGCGAGCTCGCCAGCGCCGCGCCGGGCGAGCCGGCGGCCCCGTCCGCGGTGGCCGCGCGGCTGCTGCCGTACGGCTT CGCGCGGGCCGGCCAGATCCTCGTCGCGCAACAGGACGGCGATGCGCTAGAAGTCTGGATCAGCGAGCGCACCACCGATG CCGCGCTCGCCGAGGTGGCGCGCAACTTCGGCGCGCTGACGGCGCGCCGGCTGCCCGCCGACGAACTGGCGCAGGCCATC AACACCGCTTATGCGCGCCAGGACGGCAGCGCGGCGCAGGTGGTTGGCGAGGTCGAGGGCGAGGTGGACCTGTCGCGGCT GATGCAGGACATCCCCGAGGTGGAGGACCTGCTCGAATCGGAGGACGACGCGCCGATCATCCGCATGATCAACGCGCTGC TCACGCAGGCCGCGCGCGAACAGGCCTCGGACATCCACATCGAGCCCTTCGAGAACGCGTCGGTGGTGCGCTTCCGCGTG GACGGCACGCTGCGCGACGTGGTGCGCCCGAAGAAGGCGCTGCATGGCGCGCTGATCTCGCGGATCAAGATCATGGCGCA GCTCGACATCGCCGAGAAACGCCTGCCGCAGGACGGCCGCATCACGCTGCGCGTCGGCGGCCGTCCGGTGGACGTGCGCG TCTCGACGCTGCCCACCGGGCACGGCGAGCGCGCGGTGCTGCGTCTGCTGGAAAAGGACGCGCAGCGCCTGAACCTCGAG GCGCTCGGCATGGGCCGCGACACCCTGGTGCAGTTCGACAAGCTGATCGCGCGCCCGCACGGCATCGTGCTGGTGACCGG CCCGACCGGCTCGGGCAAGACCACCACGCTCTACGCCGCGATGTCGCGGCTCGAGACCGCGACCACCAACATCATGACGG TCGAGGATCCGATCGAATACGACCTGTCCGGCATCGGCCAGACCCAGGTCAACGAGAAGATCGGCATGAGTTTCGCGCGT GCGCTGCGCTCGATCCTGCGCCAGGACCCGGACGTGATCATGATCGGCGAAATCCGCGATCTCGAGACCGCGCAGATCGC CGTGCAGGCGTCGCTGACGGGCCACCTGGTGCTGGCCACGCTGCACACCAACGACGCGGCGTCGGCCGTCACGCGCCTGA CCGACATGGGCGTGGAGCCGTACCTGCTCGCCTCGTCGCTGCTCGGCGTGCTCGCGCAGCGTCTGGTGCGCCAGCTCTGC CCGGTCTGCAAGGAGCCGCGCGAGGAAGACGGGCGCACCCTCTATCACCCGGTCGGCTGCGAGAAGTGCGGCCATTCCGG CTACACCGGCCGGCGCGGCGTATACGAGCTGCTGGTGGTGGACGAGGCGATCCGCGCGCAGATCCACAACAACGCGCCCG ACTCGGAAATCCTGCGCGCGGGCCGCGAGAACGGCATGCGCACGCTGCGCGACGACGCCGAGCGCTGGCTCGCGGCGGGC AACACCTCGCTCGAGGAAGTGCTGCGCGTGACGGGAGGCGCATAG
Upstream 100 bases:
>100_bases CCAGCGCCGGCGCGGCCACGCCGCCGGCCGCCAGCCAGCCCGCGCCGGCCGTGACGACGCCGGTGCCCACGCCGGGCATC GCCTCGCCGGGAGCGCAGCC
Downstream 100 bases:
>100_bases CGCGATGCCGGCATTCCGTTTCGAAGCGATCGACGCAGGCGGGCGCCCCCAGAAGGGCGTGATCGAGGCAGACAGCGCGC GCGCCGCGCGCGGCCAGCTG
Product: general secretory pathway protein E
Products: NA
Alternate protein names: Pectic enzymes secretion protein outE; Type II traffic warden ATPase [H]
Number of amino acids: Translated: 494; Mature: 493
Protein sequence:
>494_residues MSELASAAPGEPAAPSAVAARLLPYGFARAGQILVAQQDGDALEVWISERTTDAALAEVARNFGALTARRLPADELAQAI NTAYARQDGSAAQVVGEVEGEVDLSRLMQDIPEVEDLLESEDDAPIIRMINALLTQAAREQASDIHIEPFENASVVRFRV DGTLRDVVRPKKALHGALISRIKIMAQLDIAEKRLPQDGRITLRVGGRPVDVRVSTLPTGHGERAVLRLLEKDAQRLNLE ALGMGRDTLVQFDKLIARPHGIVLVTGPTGSGKTTTLYAAMSRLETATTNIMTVEDPIEYDLSGIGQTQVNEKIGMSFAR ALRSILRQDPDVIMIGEIRDLETAQIAVQASLTGHLVLATLHTNDAASAVTRLTDMGVEPYLLASSLLGVLAQRLVRQLC PVCKEPREEDGRTLYHPVGCEKCGHSGYTGRRGVYELLVVDEAIRAQIHNNAPDSEILRAGRENGMRTLRDDAERWLAAG NTSLEEVLRVTGGA
Sequences:
>Translated_494_residues MSELASAAPGEPAAPSAVAARLLPYGFARAGQILVAQQDGDALEVWISERTTDAALAEVARNFGALTARRLPADELAQAI NTAYARQDGSAAQVVGEVEGEVDLSRLMQDIPEVEDLLESEDDAPIIRMINALLTQAAREQASDIHIEPFENASVVRFRV DGTLRDVVRPKKALHGALISRIKIMAQLDIAEKRLPQDGRITLRVGGRPVDVRVSTLPTGHGERAVLRLLEKDAQRLNLE ALGMGRDTLVQFDKLIARPHGIVLVTGPTGSGKTTTLYAAMSRLETATTNIMTVEDPIEYDLSGIGQTQVNEKIGMSFAR ALRSILRQDPDVIMIGEIRDLETAQIAVQASLTGHLVLATLHTNDAASAVTRLTDMGVEPYLLASSLLGVLAQRLVRQLC PVCKEPREEDGRTLYHPVGCEKCGHSGYTGRRGVYELLVVDEAIRAQIHNNAPDSEILRAGRENGMRTLRDDAERWLAAG NTSLEEVLRVTGGA >Mature_493_residues SELASAAPGEPAAPSAVAARLLPYGFARAGQILVAQQDGDALEVWISERTTDAALAEVARNFGALTARRLPADELAQAIN TAYARQDGSAAQVVGEVEGEVDLSRLMQDIPEVEDLLESEDDAPIIRMINALLTQAAREQASDIHIEPFENASVVRFRVD GTLRDVVRPKKALHGALISRIKIMAQLDIAEKRLPQDGRITLRVGGRPVDVRVSTLPTGHGERAVLRLLEKDAQRLNLEA LGMGRDTLVQFDKLIARPHGIVLVTGPTGSGKTTTLYAAMSRLETATTNIMTVEDPIEYDLSGIGQTQVNEKIGMSFARA LRSILRQDPDVIMIGEIRDLETAQIAVQASLTGHLVLATLHTNDAASAVTRLTDMGVEPYLLASSLLGVLAQRLVRQLCP VCKEPREEDGRTLYHPVGCEKCGHSGYTGRRGVYELLVVDEAIRAQIHNNAPDSEILRAGRENGMRTLRDDAERWLAAGN TSLEEVLRVTGGA
Specific function: Involved in a general secretion pathway (GSP) for the export of proteins. Required for the translocation of pectate lyases and cellulases across the outer membrane [H]
COG id: COG2804
COG function: function code NU; Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP E family [H]
Homologues:
Organism=Escherichia coli, GI1789723, Length=449, Percent_Identity=51.8930957683742, Blast_Score=458, Evalue=1e-130, Organism=Escherichia coli, GI1786296, Length=436, Percent_Identity=42.2018348623853, Blast_Score=325, Evalue=4e-90, Organism=Escherichia coli, GI87082188, Length=194, Percent_Identity=43.298969072165, Blast_Score=119, Evalue=4e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013369 - InterPro: IPR001482 [H]
Pfam domain/function: PF00437 GSPII_E [H]
EC number: NA
Molecular weight: Translated: 53481; Mature: 53349
Theoretical pI: Translated: 5.02; Mature: 5.02
Prosite motif: PS00662 T2SP_E
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSELASAAPGEPAAPSAVAARLLPYGFARAGQILVAQQDGDALEVWISERTTDAALAEVA CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEECCCHHHHHHHHH RNFGALTARRLPADELAQAINTAYARQDGSAAQVVGEVEGEVDLSRLMQDIPEVEDLLES HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC EDDAPIIRMINALLTQAAREQASDIHIEPFENASVVRFRVDGTLRDVVRPKKALHGALIS CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHH RIKIMAQLDIAEKRLPQDGRITLRVGGRPVDVRVSTLPTGHGERAVLRLLEKDAQRLNLE HHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCHH ALGMGRDTLVQFDKLIARPHGIVLVTGPTGSGKTTTLYAAMSRLETATTNIMTVEDPIEY HCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEECCCCHH DLSGIGQTQVNEKIGMSFARALRSILRQDPDVIMIGEIRDLETAQIAVQASLTGHLVLAT HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHEEEEEECCCEEEEEE LHTNDAASAVTRLTDMGVEPYLLASSLLGVLAQRLVRQLCPVCKEPREEDGRTLYHPVGC EECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCH EKCGHSGYTGRRGVYELLVVDEAIRAQIHNNAPDSEILRAGRENGMRTLRDDAERWLAAG HHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCC NTSLEEVLRVTGGA CCCHHHHHHHCCCC >Mature Secondary Structure SELASAAPGEPAAPSAVAARLLPYGFARAGQILVAQQDGDALEVWISERTTDAALAEVA CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEECCCHHHHHHHHH RNFGALTARRLPADELAQAINTAYARQDGSAAQVVGEVEGEVDLSRLMQDIPEVEDLLES HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC EDDAPIIRMINALLTQAAREQASDIHIEPFENASVVRFRVDGTLRDVVRPKKALHGALIS CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHH RIKIMAQLDIAEKRLPQDGRITLRVGGRPVDVRVSTLPTGHGERAVLRLLEKDAQRLNLE HHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCHH ALGMGRDTLVQFDKLIARPHGIVLVTGPTGSGKTTTLYAAMSRLETATTNIMTVEDPIEY HCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEECCCCHH DLSGIGQTQVNEKIGMSFARALRSILRQDPDVIMIGEIRDLETAQIAVQASLTGHLVLAT HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHEEEEEECCCEEEEEE LHTNDAASAVTRLTDMGVEPYLLASSLLGVLAQRLVRQLCPVCKEPREEDGRTLYHPVGC EECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCH EKCGHSGYTGRRGVYELLVVDEAIRAQIHNNAPDSEILRAGRENGMRTLRDDAERWLAAG HHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCC NTSLEEVLRVTGGA CCCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1429461 [H]