| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is atoS [C]
Identifier: 238025579
GI number: 238025579
Start: 2823129
End: 2825417
Strand: Direct
Name: atoS [C]
Synonym: bglu_2g22760
Alternate gene names: 238025579
Gene position: 2823129-2825417 (Clockwise)
Preceding gene: 238025578
Following gene: NA
Centisome position: 99.85
GC content: 69.59
Gene sequence:
>2289_bases ATGAAGTCTGACCGGCCTGACGCTTCACGCGCCTCGTCCGCCGCCGCGGACTGGCAGGACGACGACGCGTCGTTCGCCTC GGGCGCGCCCGAACACGACTTCGCGGTCCGCCGGATCACGCTGATCGTGTTGCTCGCCGCCGCGATCGTGCTGCCCTGCA TCTACGTCGCCGTGATGGCCTACAACGACCTGCGCGCGCGCGAGGCCACCGCGCGCGACGTGACGATGCGCACCGTGCGC GTGGCCGAGGAGCACGCGCTGAAGGTGTTCGACCTGACCGAATCGCTCGACGCGCGCATCGTCGACCTGGTCCACGATCT CGACGACCAGGCGGTGCGCAACGCGGAGGCCGACATCCACGACGCCCTGAACACCATCGGCGGCGGCTATCCGCAGGTGG CCGCGGTATCGATCTTCGGCGCGAGCGGAATGCTGCTCGCCAACAGCCTCTATTACCCGGCGCCCTATGCCTCGATCGCG AACCGCGACGACTTCATCGGCATCCGCGACGGCAAGGTGATCGAGCATATCTCGCGGCCGATGCGCGGCCCGCTGCGCTC GGCCACGCCGAGCCTGGTGTTCAACACCGGTGTCGCGCGCCGGCACAGCGACGGCAGCTTCGCCGGCATGGTGTCGATCG CGCTGAAATCCTCGTACTTCAACGCGTTTTACCGCGAGCTGCTGGGCGGCGAAGGCTCGCCGATGACGATGGCGCTCACG CGCAGCGACGGTGCCGTGCTCGCCGCGTACCCGCCGCCGCCCGACAGCGGCGACGAGAAGCTCGACGAGCGCGTCGCGCC GTTCGTCAACGCGCGCGACGCGAATTCGCACGCCGGCATCTCGCGCGTCCAGCATGACGGCATGACCGAAATCGTCGCGT ATCGGCAGGTCGGCGCCTATCCGGTGTACGTCACCTGCGCGTACCGCGCGTCCGCGATCTGGCAGGCCTGGTACGAACAC CTGAGCGTGCTGTTCGTGTCGATGTTCGCGCCGTCGCTCGCGCTCTGGTGCGTGATCTGGCTGTCGCTGAAACGGCTGCG CGTGGAGGAGCAAGCCTGGGACCGCTGGCAGGCCGAGGCCTCGATGCGCCGCTCGATCGAATCGGCGTACCGGCAGTCGC GCAAGATGGAAGCGCTCGGCAACCTGGTGGGCAGCGTCGCGCACGACTTCAACAACCTGCTGATGATCATCTCGAGCAAT ATCCAGATCGTCCGCCGGCGCGGCGCCGACCAGCTCGACACCGAGCTGACCGCCGTCGAGCGCGCGCTGAAGAACGGCCA GTCGCTCACGCGCCAGCTGCTCGGCGTGGCGCGCAAGCAGCCGCTGCGCAGCGAGACGATCGACGTGCCGCAATGGCTCG GCTCGTCGTGCCGCGAGCTGCTGAAGACTTCGCTGAGTTCGAAGTCCTCGCTCGTCATCGAGATGCCGCCCGACATCTGG CCGATCCGCGTCGACCTCGCCGAACTCGAGCTGGCCGTGATCAACCTGTCGGTGAACGCGCGCGACGCGATGCCGACCGG CGGGCGCTTCACGATCGCCGCGCAGAACCTCACGTTCCGCCACGAGGACGGCTTTCCGCTGACGGGCGACTACGTCTGCA TCGCGCTGTCGGACACCGGCAGCGGCATGCCGCCGGAGGTGCTCGCCCATGCGTTCGAGCCGCTCTTCACCACCAAGCCG AAGGGGATGGGCACGGGCCTCGGACTGCCGCAGGTGTTCGCGTTCTGCGAGCGCTCGGGCGGCATCGCGACGATCGACAG CGAGCAAGGGCGGGGCACCACGGTGCGGCTCTATCTGCCGCGCGCGAAGGCGGGCGACCCGGCGCCGGCGCCGCCCGCCG CGCCGCGCAGCAAGGCGCCGGCCACGCAGGCACGGCACGAAGGGCTGCGCATCCTGCTGGTGGAGGACAACGGCGACGTG GCCGCCGGCACCGAGGCGCTGCTCGCGCTGCTCGGCCATCGCGTCACCTACGCGGCCAACGCCGACGACGCGCTCGCGCT GCTGAACGCCCCCGTCGCGCCCGACGACGAGATGCGCCCCTACGACCTCGTGATCTCCGACATCCACATGCCGGGCAAGC TCAACGGCATCGATCTGGCCGAGATCATCGAGTCCCGCCCCGGCGCGCCGCTGCCGGTGATTCTCGTCACCGGTTACGCG GAGGAGCTCGACCGCACGCGGCGCGTCAACGCGCGCGTGCTATCGAAGCCGTTCGACATCGGCCTGCTCGACGAGATACT GCAGGCGATCCGCGAGGGGCGTGACGCGCGCCGGGCCACGCGAAGCTGA
Upstream 100 bases:
>100_bases GCGCCAGCGATGCGCAAACGGGCCGGAAGCGACGCTGCCCGAGTCGTTTATGATGGCGATCGAGCAATACCGCCACCACA CGCAGTCTCGCATCTTCACC
Downstream 100 bases:
>100_bases GATCGGGCCGGACGCCACCGGCACGCCGGAACGTCAGGTGCGGCGCGCGCCACCGACGGCGCCCCGATGGCTTGGTGAGC GTGGACGCTCAGGCCGCGGC
Product: Sensor histidine kinase/response regulator
Products: NA
Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]
Number of amino acids: Translated: 762; Mature: 762
Protein sequence:
>762_residues MKSDRPDASRASSAAADWQDDDASFASGAPEHDFAVRRITLIVLLAAAIVLPCIYVAVMAYNDLRAREATARDVTMRTVR VAEEHALKVFDLTESLDARIVDLVHDLDDQAVRNAEADIHDALNTIGGGYPQVAAVSIFGASGMLLANSLYYPAPYASIA NRDDFIGIRDGKVIEHISRPMRGPLRSATPSLVFNTGVARRHSDGSFAGMVSIALKSSYFNAFYRELLGGEGSPMTMALT RSDGAVLAAYPPPPDSGDEKLDERVAPFVNARDANSHAGISRVQHDGMTEIVAYRQVGAYPVYVTCAYRASAIWQAWYEH LSVLFVSMFAPSLALWCVIWLSLKRLRVEEQAWDRWQAEASMRRSIESAYRQSRKMEALGNLVGSVAHDFNNLLMIISSN IQIVRRRGADQLDTELTAVERALKNGQSLTRQLLGVARKQPLRSETIDVPQWLGSSCRELLKTSLSSKSSLVIEMPPDIW PIRVDLAELELAVINLSVNARDAMPTGGRFTIAAQNLTFRHEDGFPLTGDYVCIALSDTGSGMPPEVLAHAFEPLFTTKP KGMGTGLGLPQVFAFCERSGGIATIDSEQGRGTTVRLYLPRAKAGDPAPAPPAAPRSKAPATQARHEGLRILLVEDNGDV AAGTEALLALLGHRVTYAANADDALALLNAPVAPDDEMRPYDLVISDIHMPGKLNGIDLAEIIESRPGAPLPVILVTGYA EELDRTRRVNARVLSKPFDIGLLDEILQAIREGRDARRATRS
Sequences:
>Translated_762_residues MKSDRPDASRASSAAADWQDDDASFASGAPEHDFAVRRITLIVLLAAAIVLPCIYVAVMAYNDLRAREATARDVTMRTVR VAEEHALKVFDLTESLDARIVDLVHDLDDQAVRNAEADIHDALNTIGGGYPQVAAVSIFGASGMLLANSLYYPAPYASIA NRDDFIGIRDGKVIEHISRPMRGPLRSATPSLVFNTGVARRHSDGSFAGMVSIALKSSYFNAFYRELLGGEGSPMTMALT RSDGAVLAAYPPPPDSGDEKLDERVAPFVNARDANSHAGISRVQHDGMTEIVAYRQVGAYPVYVTCAYRASAIWQAWYEH LSVLFVSMFAPSLALWCVIWLSLKRLRVEEQAWDRWQAEASMRRSIESAYRQSRKMEALGNLVGSVAHDFNNLLMIISSN IQIVRRRGADQLDTELTAVERALKNGQSLTRQLLGVARKQPLRSETIDVPQWLGSSCRELLKTSLSSKSSLVIEMPPDIW PIRVDLAELELAVINLSVNARDAMPTGGRFTIAAQNLTFRHEDGFPLTGDYVCIALSDTGSGMPPEVLAHAFEPLFTTKP KGMGTGLGLPQVFAFCERSGGIATIDSEQGRGTTVRLYLPRAKAGDPAPAPPAAPRSKAPATQARHEGLRILLVEDNGDV AAGTEALLALLGHRVTYAANADDALALLNAPVAPDDEMRPYDLVISDIHMPGKLNGIDLAEIIESRPGAPLPVILVTGYA EELDRTRRVNARVLSKPFDIGLLDEILQAIREGRDARRATRS >Mature_762_residues MKSDRPDASRASSAAADWQDDDASFASGAPEHDFAVRRITLIVLLAAAIVLPCIYVAVMAYNDLRAREATARDVTMRTVR VAEEHALKVFDLTESLDARIVDLVHDLDDQAVRNAEADIHDALNTIGGGYPQVAAVSIFGASGMLLANSLYYPAPYASIA NRDDFIGIRDGKVIEHISRPMRGPLRSATPSLVFNTGVARRHSDGSFAGMVSIALKSSYFNAFYRELLGGEGSPMTMALT RSDGAVLAAYPPPPDSGDEKLDERVAPFVNARDANSHAGISRVQHDGMTEIVAYRQVGAYPVYVTCAYRASAIWQAWYEH LSVLFVSMFAPSLALWCVIWLSLKRLRVEEQAWDRWQAEASMRRSIESAYRQSRKMEALGNLVGSVAHDFNNLLMIISSN IQIVRRRGADQLDTELTAVERALKNGQSLTRQLLGVARKQPLRSETIDVPQWLGSSCRELLKTSLSSKSSLVIEMPPDIW PIRVDLAELELAVINLSVNARDAMPTGGRFTIAAQNLTFRHEDGFPLTGDYVCIALSDTGSGMPPEVLAHAFEPLFTTKP KGMGTGLGLPQVFAFCERSGGIATIDSEQGRGTTVRLYLPRAKAGDPAPAPPAAPRSKAPATQARHEGLRILLVEDNGDV AAGTEALLALLGHRVTYAANADDALALLNAPVAPDDEMRPYDLVISDIHMPGKLNGIDLAEIIESRPGAPLPVILVTGYA EELDRTRRVNARVLSKPFDIGLLDEILQAIREGRDARRATRS
Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=258, Percent_Identity=25.968992248062, Blast_Score=80, Evalue=6e-16, Organism=Escherichia coli, GI1790436, Length=243, Percent_Identity=27.1604938271605, Blast_Score=76, Evalue=9e-15, Organism=Escherichia coli, GI48994928, Length=241, Percent_Identity=26.5560165975104, Blast_Score=64, Evalue=3e-11, Organism=Escherichia coli, GI87081816, Length=201, Percent_Identity=28.3582089552239, Blast_Score=63, Evalue=8e-11, Organism=Escherichia coli, GI1790346, Length=241, Percent_Identity=26.9709543568465, Blast_Score=63, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 82924; Mature: 82924
Theoretical pI: Translated: 5.92; Mature: 5.92
Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSDRPDASRASSAAADWQDDDASFASGAPEHDFAVRRITLIVLLAAAIVLPCIYVAVMA CCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH YNDLRAREATARDVTMRTVRVAEEHALKVFDLTESLDARIVDLVHDLDDQAVRNAEADIH HHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHHHHHHHCCCHHHHHHCCHHHH DALNTIGGGYPQVAAVSIFGASGMLLANSLYYPAPYASIANRDDFIGIRDGKVIEHISRP HHHHHHCCCCCCEEEEEEECCCCHHHHCCCCCCCCCHHHCCCCCEEECCCCHHHHHHHHH MRGPLRSATPSLVFNTGVARRHSDGSFAGMVSIALKSSYFNAFYRELLGGEGSPMTMALT CCCCHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE RSDGAVLAAYPPPPDSGDEKLDERVAPFVNARDANSHAGISRVQHDGMTEIVAYRQVGAY ECCCEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCC PVYVTCAYRASAIWQAWYEHLSVLFVSMFAPSLALWCVIWLSLKRLRVEEQAWDRWQAEA EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SMRRSIESAYRQSRKMEALGNLVGSVAHDFNNLLMIISSNIQIVRRRGADQLDTELTAVE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHCCCCHHHHHHHHHH RALKNGQSLTRQLLGVARKQPLRSETIDVPQWLGSSCRELLKTSLSSKSSLVIEMPPDIW HHHHCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCE PIRVDLAELELAVINLSVNARDAMPTGGRFTIAAQNLTFRHEDGFPLTGDYVCIALSDTG EEEEEHHHEEEEEEEEEECCCCCCCCCCEEEEEECCEEEEECCCCCCCCCEEEEEEECCC SGMPPEVLAHAFEPLFTTKPKGMGTGLGLPQVFAFCERSGGIATIDSEQGRGTTVRLYLP CCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEC RAKAGDPAPAPPAAPRSKAPATQARHEGLRILLVEDNGDVAAGTEALLALLGHRVTYAAN CCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEECC ADDALALLNAPVAPDDEMRPYDLVISDIHMPGKLNGIDLAEIIESRPGAPLPVILVTGYA CCCHHHHHCCCCCCCCCCCCHHEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEEEECCH EELDRTRRVNARVLSKPFDIGLLDEILQAIREGRDARRATRS HHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHCCHHHHHHCCC >Mature Secondary Structure MKSDRPDASRASSAAADWQDDDASFASGAPEHDFAVRRITLIVLLAAAIVLPCIYVAVMA CCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH YNDLRAREATARDVTMRTVRVAEEHALKVFDLTESLDARIVDLVHDLDDQAVRNAEADIH HHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHHHHHHHCCCHHHHHHCCHHHH DALNTIGGGYPQVAAVSIFGASGMLLANSLYYPAPYASIANRDDFIGIRDGKVIEHISRP HHHHHHCCCCCCEEEEEEECCCCHHHHCCCCCCCCCHHHCCCCCEEECCCCHHHHHHHHH MRGPLRSATPSLVFNTGVARRHSDGSFAGMVSIALKSSYFNAFYRELLGGEGSPMTMALT CCCCHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE RSDGAVLAAYPPPPDSGDEKLDERVAPFVNARDANSHAGISRVQHDGMTEIVAYRQVGAY ECCCEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCC PVYVTCAYRASAIWQAWYEHLSVLFVSMFAPSLALWCVIWLSLKRLRVEEQAWDRWQAEA EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SMRRSIESAYRQSRKMEALGNLVGSVAHDFNNLLMIISSNIQIVRRRGADQLDTELTAVE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHCCCCHHHHHHHHHH RALKNGQSLTRQLLGVARKQPLRSETIDVPQWLGSSCRELLKTSLSSKSSLVIEMPPDIW HHHHCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCE PIRVDLAELELAVINLSVNARDAMPTGGRFTIAAQNLTFRHEDGFPLTGDYVCIALSDTG EEEEEHHHEEEEEEEEEECCCCCCCCCCEEEEEECCEEEEECCCCCCCCCEEEEEEECCC SGMPPEVLAHAFEPLFTTKPKGMGTGLGLPQVFAFCERSGGIATIDSEQGRGTTVRLYLP CCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEC RAKAGDPAPAPPAAPRSKAPATQARHEGLRILLVEDNGDVAAGTEALLALLGHRVTYAAN CCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEECC ADDALALLNAPVAPDDEMRPYDLVISDIHMPGKLNGIDLAEIIESRPGAPLPVILVTGYA CCCHHHHHCCCCCCCCCCCCHHEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEEEECCH EELDRTRRVNARVLSKPFDIGLLDEILQAIREGRDARRATRS HHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA