| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is dedA [H]
Identifier: 238025510
GI number: 238025510
Start: 2738079
End: 2739068
Strand: Direct
Name: dedA [H]
Synonym: bglu_2g22060
Alternate gene names: 238025510
Gene position: 2738079-2739068 (Clockwise)
Preceding gene: 238025509
Following gene: 238025513
Centisome position: 96.84
GC content: 72.42
Gene sequence:
>990_bases ATGCTGCATGACCTCATCGCCCGATACGGGCCGTTGATCGTGTTCGTCAACGTGCTGGCCGCCGCGCTCGGCTTGCCCGT GCCGGCAATGCCCACGCTCGTCCTGTTCGGCGCGATGGCCACCCTGCATCCCGAGGTGTTCGGCATGCAACTGGTGCCGG TGCTGCTGCTGTCGGTGGCGGCGGCGCTGCTCGGCGACTCGGCTTGGTACGCGGCGGGGCGCCGCTTCGGCGGCAAGACG CTGAGGACGATCTGCCGGCTGTCGCTATCGCGCGACAGTTGCGTGAAAAAAACCGAGCAGTTCTTCGGTCGCTGGGGCGT GCGCGTGCTCGCGATCGCGCGCTTCGTGCCGGGGCTGTCGCTGGTGTCGGTGCCGCTGGCCGGCGCGCTCGGCACGCGCT ATCGCACCTTCGTCGGCTACGACGCGCTCGGCGCGCTGCTGTGGGCCGCGGCCGGGCTGCTGATCGGGCTCGTGTTCGCC GAGCAGATCGACTGGCTGTTGGCGGCCGCGAGCCGGCTCGGCCACGCCGCGCTGGCCGTCGTCGCCGTGCTGCTCGCGCT CTACGCGAGCGTGCGCTGGATGCGCCGCCGCGCGCTGCTGCGCCAGCTCGTCCACGCGCGCATCGGCGTCGACGAGCTCG ATCGACTGCTGCATGCCGATGCGGGGCCGCCGCCCGTCGTGATCGACGTGCGGACCGCCGAGCATCGGCGCCTCGATCCG TTCTCGATTCCCGGCGCGGTGTTCGCCGACGAGCGGCACATCCGCGATCTGGCCGCCCGCTATCCGCTGTCGCAAAGGTT CGTGACCTACTGCGCCTGCCCGAACGAGGTGTCGGCGGTGCTGATGGCCAGACGGCTGTCGGACGCCGGCTTCACCGACG CGCTCGCGCTGCGCGGCGGCCTCGACGCCTGGCGCGACTCCGGCCGGCCGCTGGCCGGCATCGTGCTGGCCGAACCGGTC CCGGCCGCGCCGGCGCCGAAGACGGCCTGA
Upstream 100 bases:
>100_bases TCAGCCGACGCTCCCTTGACCCGAAAGTGATCGATAATCGGTCCCGTCCGATTCGCGTGTCCGACTCACGCCCGCTGCTT TCGCATTTCACCCATCGATC
Downstream 100 bases:
>100_bases GCCGCGCGGCCCGAGGCCCGCGGGCCCGCCTCTGCGCCGACGCTCAGAACACCGTCATCGGCAGATTGACCACCAGCCGG TATTCCTGATTGGTGCTGTC
Product: Rhodanese domain-containing protein
Products: NA
Alternate protein names: Protein DSG-1 [H]
Number of amino acids: Translated: 329; Mature: 329
Protein sequence:
>329_residues MLHDLIARYGPLIVFVNVLAAALGLPVPAMPTLVLFGAMATLHPEVFGMQLVPVLLLSVAAALLGDSAWYAAGRRFGGKT LRTICRLSLSRDSCVKKTEQFFGRWGVRVLAIARFVPGLSLVSVPLAGALGTRYRTFVGYDALGALLWAAAGLLIGLVFA EQIDWLLAAASRLGHAALAVVAVLLALYASVRWMRRRALLRQLVHARIGVDELDRLLHADAGPPPVVIDVRTAEHRRLDP FSIPGAVFADERHIRDLAARYPLSQRFVTYCACPNEVSAVLMARRLSDAGFTDALALRGGLDAWRDSGRPLAGIVLAEPV PAAPAPKTA
Sequences:
>Translated_329_residues MLHDLIARYGPLIVFVNVLAAALGLPVPAMPTLVLFGAMATLHPEVFGMQLVPVLLLSVAAALLGDSAWYAAGRRFGGKT LRTICRLSLSRDSCVKKTEQFFGRWGVRVLAIARFVPGLSLVSVPLAGALGTRYRTFVGYDALGALLWAAAGLLIGLVFA EQIDWLLAAASRLGHAALAVVAVLLALYASVRWMRRRALLRQLVHARIGVDELDRLLHADAGPPPVVIDVRTAEHRRLDP FSIPGAVFADERHIRDLAARYPLSQRFVTYCACPNEVSAVLMARRLSDAGFTDALALRGGLDAWRDSGRPLAGIVLAEPV PAAPAPKTA >Mature_329_residues MLHDLIARYGPLIVFVNVLAAALGLPVPAMPTLVLFGAMATLHPEVFGMQLVPVLLLSVAAALLGDSAWYAAGRRFGGKT LRTICRLSLSRDSCVKKTEQFFGRWGVRVLAIARFVPGLSLVSVPLAGALGTRYRTFVGYDALGALLWAAAGLLIGLVFA EQIDWLLAAASRLGHAALAVVAVLLALYASVRWMRRRALLRQLVHARIGVDELDRLLHADAGPPPVVIDVRTAEHRRLDP FSIPGAVFADERHIRDLAARYPLSQRFVTYCACPNEVSAVLMARRLSDAGFTDALALRGGLDAWRDSGRPLAGIVLAEPV PAAPAPKTA
Specific function: Unknown
COG id: COG0586
COG function: function code S; Uncharacterized membrane-associated protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dedA family [H]
Homologues:
Organism=Escherichia coli, GI1788656, Length=154, Percent_Identity=33.7662337662338, Blast_Score=69, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015414 [H]
Pfam domain/function: PF09335 SNARE_assoc [H]
EC number: NA
Molecular weight: Translated: 35345; Mature: 35345
Theoretical pI: Translated: 10.40; Mature: 10.40
Prosite motif: PS50206 RHODANESE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLHDLIARYGPLIVFVNVLAAALGLPVPAMPTLVLFGAMATLHPEVFGMQLVPVLLLSVA CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AALLGDSAWYAAGRRFGGKTLRTICRLSLSRDSCVKKTEQFFGRWGVRVLAIARFVPGLS HHHHCCHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH LVSVPLAGALGTRYRTFVGYDALGALLWAAAGLLIGLVFAEQIDWLLAAASRLGHAALAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VAVLLALYASVRWMRRRALLRQLVHARIGVDELDRLLHADAGPPPVVIDVRTAEHRRLDP HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC FSIPGAVFADERHIRDLAARYPLSQRFVTYCACPNEVSAVLMARRLSDAGFTDALALRGG CCCCCCHHCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHCC LDAWRDSGRPLAGIVLAEPVPAAPAPKTA CHHHHCCCCCEEEEEEECCCCCCCCCCCC >Mature Secondary Structure MLHDLIARYGPLIVFVNVLAAALGLPVPAMPTLVLFGAMATLHPEVFGMQLVPVLLLSVA CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AALLGDSAWYAAGRRFGGKTLRTICRLSLSRDSCVKKTEQFFGRWGVRVLAIARFVPGLS HHHHCCHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH LVSVPLAGALGTRYRTFVGYDALGALLWAAAGLLIGLVFAEQIDWLLAAASRLGHAALAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VAVLLALYASVRWMRRRALLRQLVHARIGVDELDRLLHADAGPPPVVIDVRTAEHRRLDP HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC FSIPGAVFADERHIRDLAARYPLSQRFVTYCACPNEVSAVLMARRLSDAGFTDALALRGG CCCCCCHHCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHCC LDAWRDSGRPLAGIVLAEPVPAAPAPKTA CHHHHCCCCCEEEEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]