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The map label for this gene is cydB [H]

Identifier: 238025458

GI number: 238025458

Start: 2668394

End: 2669401

Strand: Direct

Name: cydB [H]

Synonym: bglu_2g21500

Alternate gene names: 238025458

Gene position: 2668394-2669401 (Clockwise)

Preceding gene: 238025457

Following gene: 238025459

Centisome position: 94.38

GC content: 68.65

Gene sequence:

>1008_bases
ATGGACGTCACCGTCATCTGGGCCGCGATCATCGCCCTCGGCCTTTTCATGTACGTGGTGCTCGACGGCTTCGACCTGGG
CATCGGCATCGTCTTTCCGTTCTTTCCCGACGAGCGCGAGCGCGACCTGATGATGAGCACGGTCGCGCCGGTCTGGGACG
GCAACGAGACCTGGCTCGTGCTGGGCGGCGCGGGCCTGTTCGCGGCCTTCCCGATCGTCTACGCGACGGTGCTGCCGGCG
CTCTACCTGCCGCTCGTCTTCATGCTGGTATGTCTGATCTTCCGCGGCGTGTCGTTCGAGCTGCGCGCCAAGGCGCGCCG
CACCAAGCACCTGTGGGATCTCGCGTTCATCGGCGGCTCGGCCGGCGCGACGTTCTTCCAGGGCATCGCGCTCGGCGCCT
ACCTGCAGGGCATTCCGGTGGCCGACGGCCGCTTCGCCGGCGAAGCGTTCGGCTGGCTCACGCCGTTCTCGCTGCTCACC
GGCCTCGGGCTCGTCGCCACCTATGCGCTGCTCGGCTGCTGCTGGCTGGTGGCGAAGACCGAGGGCGACCTGCAGCGCCG
CCTGCACCGCGTGGTGTGGCCGCTCACCGTGGTGCTGCTCGCGCTGATCGGCATCGTCAGCGTCTGGACGCCGCTGCAGG
AGCCGGCCGTGGCCCAGCGCTGGTTCGGCTCGGGCCTGTTCGCCTACCTGATGCCGGTGCCGTTCCTGGTGGCGGCCTGC
GGCGCGTGGATGTACCGCGCCGTGCGCGCGCGGCGTGATACGCTGCCCTTCGTGCTCGCGCTGGCGATCGTCGCGCTCGG
CTATCTCGGGCTGCTGGTGAGCCTGTTCCCGTATGCGATCCCGCGCAGCGTCACGCTGTGGGAAGCGGCCGCGCCGCGTT
CGAGCCAGATCTTCACGCTGGTGGGCGCCGCGGTGATCCTGCCGATCATCATCGGCTACACCACGATGGGTTACTGGGTA
TTCCGGGGCAAGATCCGCCATGAAGACCAGCACAACTACCACCACTGA

Upstream 100 bases:

>100_bases
GCAGTCGGGCCGGCGCCCGCTGTCGGCCCCGGACCAGCCGATCGACGCCGCCTGAGCGCCGCCACGACACGAACCGCATC
CGGAAGCACAAGGAACTCTC

Downstream 100 bases:

>100_bases
GCCGCCGGCCGGCGGCCGCCGCTCGCGCGCTGCACGCCGCCCGGGCCGCCTGCCCGGCTGGGCCTGGTTCGTGCTGCTGT
GGCTCGGCGGCGTGGCCGGC

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MDVTVIWAAIIALGLFMYVVLDGFDLGIGIVFPFFPDERERDLMMSTVAPVWDGNETWLVLGGAGLFAAFPIVYATVLPA
LYLPLVFMLVCLIFRGVSFELRAKARRTKHLWDLAFIGGSAGATFFQGIALGAYLQGIPVADGRFAGEAFGWLTPFSLLT
GLGLVATYALLGCCWLVAKTEGDLQRRLHRVVWPLTVVLLALIGIVSVWTPLQEPAVAQRWFGSGLFAYLMPVPFLVAAC
GAWMYRAVRARRDTLPFVLALAIVALGYLGLLVSLFPYAIPRSVTLWEAAAPRSSQIFTLVGAAVILPIIIGYTTMGYWV
FRGKIRHEDQHNYHH

Sequences:

>Translated_335_residues
MDVTVIWAAIIALGLFMYVVLDGFDLGIGIVFPFFPDERERDLMMSTVAPVWDGNETWLVLGGAGLFAAFPIVYATVLPA
LYLPLVFMLVCLIFRGVSFELRAKARRTKHLWDLAFIGGSAGATFFQGIALGAYLQGIPVADGRFAGEAFGWLTPFSLLT
GLGLVATYALLGCCWLVAKTEGDLQRRLHRVVWPLTVVLLALIGIVSVWTPLQEPAVAQRWFGSGLFAYLMPVPFLVAAC
GAWMYRAVRARRDTLPFVLALAIVALGYLGLLVSLFPYAIPRSVTLWEAAAPRSSQIFTLVGAAVILPIIIGYTTMGYWV
FRGKIRHEDQHNYHH
>Mature_335_residues
MDVTVIWAAIIALGLFMYVVLDGFDLGIGIVFPFFPDERERDLMMSTVAPVWDGNETWLVLGGAGLFAAFPIVYATVLPA
LYLPLVFMLVCLIFRGVSFELRAKARRTKHLWDLAFIGGSAGATFFQGIALGAYLQGIPVADGRFAGEAFGWLTPFSLLT
GLGLVATYALLGCCWLVAKTEGDLQRRLHRVVWPLTVVLLALIGIVSVWTPLQEPAVAQRWFGSGLFAYLMPVPFLVAAC
GAWMYRAVRARRDTLPFVLALAIVALGYLGLLVSLFPYAIPRSVTLWEAAAPRSSQIFTLVGAAVILPIIIGYTTMGYWV
FRGKIRHEDQHNYHH

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=371, Percent_Identity=29.1105121293801, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1787213, Length=371, Percent_Identity=29.6495956873315, Blast_Score=122, Evalue=5e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36887; Mature: 36887

Theoretical pI: Translated: 8.58; Mature: 8.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVTVIWAAIIALGLFMYVVLDGFDLGIGIVFPFFPDERERDLMMSTVAPVWDGNETWLV
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHEEECCCCCCCHHHHHHHHHCCCCCCCCEEEE
LGGAGLFAAFPIVYATVLPALYLPLVFMLVCLIFRGVSFELRAKARRTKHLWDLAFIGGS
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEECCC
AGATFFQGIALGAYLQGIPVADGRFAGEAFGWLTPFSLLTGLGLVATYALLGCCWLVAKT
CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
EGDLQRRLHRVVWPLTVVLLALIGIVSVWTPLQEPAVAQRWFGSGLFAYLMPVPFLVAAC
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH
GAWMYRAVRARRDTLPFVLALAIVALGYLGLLVSLFPYAIPRSVTLWEAAAPRSSQIFTL
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHH
VGAAVILPIIIGYTTMGYWVFRGKIRHEDQHNYHH
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MDVTVIWAAIIALGLFMYVVLDGFDLGIGIVFPFFPDERERDLMMSTVAPVWDGNETWLV
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHEEECCCCCCCHHHHHHHHHCCCCCCCCEEEE
LGGAGLFAAFPIVYATVLPALYLPLVFMLVCLIFRGVSFELRAKARRTKHLWDLAFIGGS
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEECCC
AGATFFQGIALGAYLQGIPVADGRFAGEAFGWLTPFSLLTGLGLVATYALLGCCWLVAKT
CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
EGDLQRRLHRVVWPLTVVLLALIGIVSVWTPLQEPAVAQRWFGSGLFAYLMPVPFLVAAC
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH
GAWMYRAVRARRDTLPFVLALAIVALGYLGLLVSLFPYAIPRSVTLWEAAAPRSSQIFTL
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHH
VGAAVILPIIIGYTTMGYWVFRGKIRHEDQHNYHH
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]