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The map label for this gene is cydA [H]

Identifier: 238025457

GI number: 238025457

Start: 2666933

End: 2668348

Strand: Direct

Name: cydA [H]

Synonym: bglu_2g21490

Alternate gene names: 238025457

Gene position: 2666933-2668348 (Clockwise)

Preceding gene: 238025452

Following gene: 238025458

Centisome position: 94.33

GC content: 68.22

Gene sequence:

>1416_bases
ATGGAAACCGCTTTTTCGGCCCTGGATCTGGCCCGCCTGCAGTTCGCCTTCACCGTCTCGTTCCACATCGTGTTCCCCGC
GCTCAGCATCGGGCTCGCGAGCTTCATTGCCGTGCTCGAATACCGCTGGCTGAAAACGGGCCTGCCCCATTACAAGACGC
TCTGCCTCTACTGGTCGAAGATCTTCGCGGTCGCGTTCGGCATGGGCGTGGTCTCCGGTGTGGTGATGAGCTACGAGTTC
GGCACCAACTGGGGCGGCTTCTCGAGCTTCGCCGGCGCCGTCACCGGCCCGCTGCTGATGTACGAGGTCATGACCGCGTT
CTTCCTGGAGGCCGGCTTCCTCGGCATCATGCTGTTCGGCTGGAACCGCGTGAGCGCGCGCGCGCACTTCGGCGCCACGC
TGATGGTGGCGATCGGCACGCTGATCTCGACCTTCTGGATCCTCGCCTCGAACAGCTGGATGCAGACGCCGCAGGGCTTC
GAGATCGTCGGCGGCCGCGTGGTGCCGACCGACTGGTTCAAGATCGTCTTCAACCCGTCGTTCCCGTACCGGCTCGCCCA
CATGGCGATCGCGGCATTCATCGTCGCCGCGCTGGTGGTGGCGGCCACCGGCGCCTGGCATCTGCTCAAGGGCCGCCGCG
ACAAGAGCGTCACCACCATGTTCTCGATGGCGCTCGGCCTGCTGCTGATCCTCGCGCCGCTCCAGGCAGTGGTCGGCGAC
CAGCACGGCATCAACACGCTCAAGTACCAGCCGGCCAAGATCGCCGCGATCGAGGGGTTGTGGGACACCGAGCCGGGCGG
CACCGCGCTGAACCTGTTCGGCATCCCCGACATGCAGGCCGAGACCACGCGCTATGCGCTGCAGGTGCCGCACCTGGGCA
GCCTGATCCTCACGCACAGCTGGAACGGCGAGATCCGCGGCCTGAAGAGCTTCGCGCCCGAGGATCGCCCGAACTCGACG
CTGGTGTTCTGGACCTTCCGCGTGATGGTGGCGCTCGGCTTCGCGATGATCGGCTTCGCGCTGGCGGGCTGGCTGCTGCG
CCGGCGCGGCCGCCTGTACGAGGCGCGCTGGTTCCACCGGCTCGCGCTGGTGATGGGGCCGAGCGGCTTCGTCACGCTGC
TGGCCGGCTGGATCACGACCGAGGCCGGGCGCCAGCCGTGGGTGGTGTACGGCGTGATGCGCACCGCCGATGCCGCCTCG
CCGCTCAGCACGCAGCAGGTGGGGCTGTCGCTGATGACGTTCGTGCTGGTCTACTTCCTCGTGTTCGGCACCGGCATCTA
CTACCTGCTCAAGCTGATCGACGCGGGCCCGGCGCTGCCCGATGCGCCGCACACGGGCAGCCACGCCGGTACGCACGGCG
AGCAGTCGGGCCGGCGCCCGCTGTCGGCCCCGGACCAGCCGATCGACGCCGCCTGA

Upstream 100 bases:

>100_bases
CAATACTGCGTGCATCCCCGCTGCCGCAGCGCATCGCGCGGCCACGGGAGGGCCGCCCGGCAACCGCTCGCGGCCGTCGC
ACGTTCCCGGTCAAACGCTC

Downstream 100 bases:

>100_bases
GCGCCGCCACGACACGAACCGCATCCGGAAGCACAAGGAACTCTCATGGACGTCACCGTCATCTGGGCCGCGATCATCGC
CCTCGGCCTTTTCATGTACG

Product: cytochrome bd ubiquinol oxidase subunit I

Products: ubiquinone-8; H2O [C]

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 471; Mature: 471

Protein sequence:

>471_residues
METAFSALDLARLQFAFTVSFHIVFPALSIGLASFIAVLEYRWLKTGLPHYKTLCLYWSKIFAVAFGMGVVSGVVMSYEF
GTNWGGFSSFAGAVTGPLLMYEVMTAFFLEAGFLGIMLFGWNRVSARAHFGATLMVAIGTLISTFWILASNSWMQTPQGF
EIVGGRVVPTDWFKIVFNPSFPYRLAHMAIAAFIVAALVVAATGAWHLLKGRRDKSVTTMFSMALGLLLILAPLQAVVGD
QHGINTLKYQPAKIAAIEGLWDTEPGGTALNLFGIPDMQAETTRYALQVPHLGSLILTHSWNGEIRGLKSFAPEDRPNST
LVFWTFRVMVALGFAMIGFALAGWLLRRRGRLYEARWFHRLALVMGPSGFVTLLAGWITTEAGRQPWVVYGVMRTADAAS
PLSTQQVGLSLMTFVLVYFLVFGTGIYYLLKLIDAGPALPDAPHTGSHAGTHGEQSGRRPLSAPDQPIDAA

Sequences:

>Translated_471_residues
METAFSALDLARLQFAFTVSFHIVFPALSIGLASFIAVLEYRWLKTGLPHYKTLCLYWSKIFAVAFGMGVVSGVVMSYEF
GTNWGGFSSFAGAVTGPLLMYEVMTAFFLEAGFLGIMLFGWNRVSARAHFGATLMVAIGTLISTFWILASNSWMQTPQGF
EIVGGRVVPTDWFKIVFNPSFPYRLAHMAIAAFIVAALVVAATGAWHLLKGRRDKSVTTMFSMALGLLLILAPLQAVVGD
QHGINTLKYQPAKIAAIEGLWDTEPGGTALNLFGIPDMQAETTRYALQVPHLGSLILTHSWNGEIRGLKSFAPEDRPNST
LVFWTFRVMVALGFAMIGFALAGWLLRRRGRLYEARWFHRLALVMGPSGFVTLLAGWITTEAGRQPWVVYGVMRTADAAS
PLSTQQVGLSLMTFVLVYFLVFGTGIYYLLKLIDAGPALPDAPHTGSHAGTHGEQSGRRPLSAPDQPIDAA
>Mature_471_residues
METAFSALDLARLQFAFTVSFHIVFPALSIGLASFIAVLEYRWLKTGLPHYKTLCLYWSKIFAVAFGMGVVSGVVMSYEF
GTNWGGFSSFAGAVTGPLLMYEVMTAFFLEAGFLGIMLFGWNRVSARAHFGATLMVAIGTLISTFWILASNSWMQTPQGF
EIVGGRVVPTDWFKIVFNPSFPYRLAHMAIAAFIVAALVVAATGAWHLLKGRRDKSVTTMFSMALGLLLILAPLQAVVGD
QHGINTLKYQPAKIAAIEGLWDTEPGGTALNLFGIPDMQAETTRYALQVPHLGSLILTHSWNGEIRGLKSFAPEDRPNST
LVFWTFRVMVALGFAMIGFALAGWLLRRRGRLYEARWFHRLALVMGPSGFVTLLAGWITTEAGRQPWVVYGVMRTADAAS
PLSTQQVGLSLMTFVLVYFLVFGTGIYYLLKLIDAGPALPDAPHTGSHAGTHGEQSGRRPLSAPDQPIDAA

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=515, Percent_Identity=30.4854368932039, Blast_Score=245, Evalue=4e-66,
Organism=Escherichia coli, GI87081779, Length=523, Percent_Identity=30.2103250478011, Blast_Score=244, Evalue=7e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.- [C]

Molecular weight: Translated: 51448; Mature: 51448

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METAFSALDLARLQFAFTVSFHIVFPALSIGLASFIAVLEYRWLKTGLPHYKTLCLYWSK
CCCHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
IFAVAFGMGVVSGVVMSYEFGTNWGGFSSFAGAVTGPLLMYEVMTAFFLEAGFLGIMLFG
HHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
WNRVSARAHFGATLMVAIGTLISTFWILASNSWMQTPQGFEIVGGRVVPTDWFKIVFNPS
CCHHCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCEEECCCEEEEEECCC
FPYRLAHMAIAAFIVAALVVAATGAWHLLKGRRDKSVTTMFSMALGLLLILAPLQAVVGD
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
QHGINTLKYQPAKIAAIEGLWDTEPGGTALNLFGIPDMQAETTRYALQVPHLGSLILTHS
CCCCCCCEECCCCEEEECCCCCCCCCCCEEEEECCCCCCCCHHHEEEECCCCCCEEEEEC
WNGEIRGLKSFAPEDRPNSTLVFWTFRVMVALGFAMIGFALAGWLLRRRGRLYEARWFHR
CCCCCCCHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LALVMGPSGFVTLLAGWITTEAGRQPWVVYGVMRTADAASPLSTQQVGLSLMTFVLVYFL
HHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCCCCCHHHHHHHHHHHHHHHHH
VFGTGIYYLLKLIDAGPALPDAPHTGSHAGTHGEQSGRRPLSAPDQPIDAA
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
METAFSALDLARLQFAFTVSFHIVFPALSIGLASFIAVLEYRWLKTGLPHYKTLCLYWSK
CCCHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
IFAVAFGMGVVSGVVMSYEFGTNWGGFSSFAGAVTGPLLMYEVMTAFFLEAGFLGIMLFG
HHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
WNRVSARAHFGATLMVAIGTLISTFWILASNSWMQTPQGFEIVGGRVVPTDWFKIVFNPS
CCHHCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCEEECCCEEEEEECCC
FPYRLAHMAIAAFIVAALVVAATGAWHLLKGRRDKSVTTMFSMALGLLLILAPLQAVVGD
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
QHGINTLKYQPAKIAAIEGLWDTEPGGTALNLFGIPDMQAETTRYALQVPHLGSLILTHS
CCCCCCCEECCCCEEEECCCCCCCCCCCEEEEECCCCCCCCHHHEEEECCCCCCEEEEEC
WNGEIRGLKSFAPEDRPNSTLVFWTFRVMVALGFAMIGFALAGWLLRRRGRLYEARWFHR
CCCCCCCHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LALVMGPSGFVTLLAGWITTEAGRQPWVVYGVMRTADAASPLSTQQVGLSLMTFVLVYFL
HHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCCCCCHHHHHHHHHHHHHHHHH
VFGTGIYYLLKLIDAGPALPDAPHTGSHAGTHGEQSGRRPLSAPDQPIDAA
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ubiquinol-8; O2 [C]

Specific reaction: ubiquinol-8 + O2 = ubiquinone-8 + H2O [C]

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]